Wall clock time and date at job start Mon Mar 30 2020 03:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09010 * 110.85966 * 302.64000 * 10 9 7 12 12 C 1.54910 * 110.97944 * 178.79096 * 10 9 7 13 13 O 1.44192 * 103.07398 * 206.33049 * 12 10 9 14 14 C 1.43363 * 107.29267 * 21.43337 * 13 12 10 15 15 H 1.09005 * 109.50950 * 240.86494 * 14 13 12 16 16 C 1.50694 * 109.63498 * 120.54823 * 14 13 12 17 17 C 1.38654 * 120.79372 * 240.35533 * 16 14 13 18 18 C 1.38200 * 119.16248 * 179.75358 * 17 16 14 19 19 N 1.31871 * 120.76919 * 0.53144 * 18 17 16 20 20 C 1.31873 * 121.72352 * 359.74435 * 19 18 17 21 21 C 1.38204 * 120.76224 * 359.97280 * 20 19 18 22 22 O 1.43751 * 108.78995 * 0.66764 * 14 13 12 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 25 25 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 26 26 H 1.09006 * 110.69444 * 324.72199 * 12 10 9 27 27 H 1.08999 * 110.70080 * 87.93157 * 12 10 9 28 28 H 1.08001 * 120.41530 * 0.02562 * 17 16 14 29 29 H 1.08001 * 119.61703 * 180.29902 * 18 17 16 30 30 H 1.07995 * 119.62290 * 179.97438 * 20 19 18 31 31 H 1.08004 * 120.41768 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9150 -3.5964 -0.8679 12 6 1.5063 -5.0235 0.0139 13 8 2.4669 -5.9050 0.6299 14 6 3.3840 -5.0868 1.3681 15 1 4.3912 -5.2226 0.9742 16 6 3.3525 -5.4772 2.8232 17 6 2.9899 -4.5590 3.7968 18 6 2.9676 -4.9548 5.1208 19 7 3.2959 -6.1853 5.4627 20 6 3.6511 -7.0832 4.5645 21 6 3.6911 -6.7617 3.2210 22 8 2.9924 -3.7107 1.2286 23 1 -0.4850 0.8401 -0.0004 24 1 0.6242 -2.5609 0.8844 25 1 0.6244 -2.5529 -0.8956 26 1 0.6004 -4.9594 0.6168 27 1 1.2739 -5.3540 -0.9984 28 1 2.7240 -3.5486 3.5235 29 1 2.6816 -4.2469 5.8847 30 1 3.9137 -8.0814 4.8824 31 1 3.9831 -7.5013 2.4902 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260185890.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:45 Heat of formation + Delta-G solvation = -58.119364 kcal Electronic energy + Delta-G solvation = -16207.496843 eV Core-core repulsion = 13453.971114 eV Total energy + Delta-G solvation = -2753.525729 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.47501 -39.34939 -34.78062 -33.63411 -32.73282 -31.07839 -30.55214 -27.10816 -25.27263 -23.58643 -23.05054 -21.68548 -20.65532 -17.32577 -16.95840 -16.39067 -16.21960 -15.46202 -15.34997 -14.76778 -14.46728 -14.07865 -13.68323 -13.49110 -13.04073 -12.77458 -12.34922 -11.83468 -11.64506 -11.41086 -11.25188 -10.67830 -10.55004 -9.88619 -9.80373 -9.63628 -9.37575 -9.21017 -9.15385 -9.03646 -8.46959 -6.09395 -4.11216 1.23367 1.29128 3.27517 3.35442 3.40220 3.74723 3.97126 4.14631 4.39833 4.53974 4.98076 4.98593 5.17969 5.24369 5.28613 5.30088 5.45365 5.54767 5.62729 5.72854 5.93348 6.01032 6.11473 6.27423 6.44126 6.59831 6.80260 7.25725 7.44195 7.64323 7.87435 8.02794 8.25528 8.93087 9.52875 11.02091 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.031595 B = 0.006368 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.998235 B = 4395.661910 C = 4915.734755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.514 4.514 8 H 0.060 0.940 9 C 0.028 3.972 10 C 0.060 3.940 11 H 0.075 0.925 12 C 0.020 3.980 13 O -0.388 6.388 14 C 0.267 3.733 15 H 0.091 0.909 16 C -0.062 4.062 17 C -0.136 4.136 18 C 0.090 3.910 19 N -0.487 5.487 20 C 0.086 3.914 21 C -0.150 4.150 22 O -0.353 6.353 23 H 0.261 0.739 24 H 0.029 0.971 25 H 0.037 0.963 26 H 0.075 0.925 27 H 0.096 0.904 28 H 0.151 0.849 29 H 0.157 0.843 30 H 0.154 0.846 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.579 -11.397 3.880 13.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.553 4.553 8 H 0.078 0.922 9 C -0.009 4.009 10 C 0.003 3.997 11 H 0.093 0.907 12 C -0.056 4.056 13 O -0.309 6.309 14 C 0.171 3.829 15 H 0.108 0.892 16 C -0.071 4.071 17 C -0.155 4.155 18 C -0.066 4.066 19 N -0.196 5.196 20 C -0.070 4.070 21 C -0.170 4.170 22 O -0.273 6.273 23 H 0.071 0.929 24 H 0.047 0.953 25 H 0.055 0.945 26 H 0.093 0.907 27 H 0.114 0.886 28 H 0.169 0.831 29 H 0.174 0.826 30 H 0.171 0.829 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.464 -11.554 4.885 13.682 hybrid contribution 0.378 1.203 -1.037 1.633 sum 5.842 -10.350 3.848 12.493 Atomic orbital electron populations 1.69957 1.06062 1.26760 1.50762 1.24996 0.94858 0.99375 0.95170 0.86484 0.80145 0.83494 0.77600 1.19678 1.21004 1.20943 1.21110 0.93228 0.90290 1.50624 0.92217 1.19195 0.92772 0.90384 0.98567 1.24341 0.93442 0.96127 0.85752 0.90669 1.24435 0.92801 0.89735 0.98615 1.88808 1.42650 1.32290 1.67124 1.22540 0.93713 0.78980 0.87686 0.89185 1.20627 0.96564 0.94095 0.95764 1.22239 0.97985 1.02049 0.93267 1.22793 0.95963 0.92826 0.95039 1.67633 1.10636 1.02647 1.38731 1.22652 0.96579 0.98763 0.89052 1.21880 1.01004 0.96443 0.97662 1.89352 1.73203 1.22123 1.42658 0.92899 0.95251 0.94454 0.90710 0.88555 0.83129 0.82580 0.82867 0.84756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.06 13.29 55.43 0.74 -25.32 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.51 -14.06 8.96 -34.44 -0.31 -14.37 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.03 0.67 4.77 -27.88 -0.13 0.54 16 10 C 0.06 1.19 3.46 -25.73 -0.09 1.10 16 11 H 0.08 1.44 8.14 -51.92 -0.42 1.02 16 12 C 0.02 0.34 7.54 38.17 0.29 0.63 16 13 O -0.39 -6.54 11.12 -59.04 -0.66 -7.19 16 14 C 0.27 4.45 4.33 36.00 0.16 4.61 16 15 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 16 C -0.06 -0.97 5.60 -104.32 -0.58 -1.55 16 17 C -0.14 -2.15 9.45 -39.44 -0.37 -2.52 16 18 C 0.09 1.29 11.18 -17.55 -0.20 1.10 16 19 N -0.49 -7.10 10.36 -13.25 -0.14 -7.24 16 20 C 0.09 1.10 11.18 -17.55 -0.20 0.91 16 21 C -0.15 -1.99 9.76 -39.44 -0.38 -2.38 16 22 O -0.35 -7.11 9.51 -59.04 -0.56 -7.67 16 23 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 24 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.07 1.29 8.04 -51.93 -0.42 0.87 16 27 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.15 2.56 7.12 -52.49 -0.37 2.18 16 29 H 0.16 1.83 8.06 -52.49 -0.42 1.41 16 30 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.13 1.49 8.06 -52.48 -0.42 1.07 16 LS Contribution 272.93 15.07 4.11 4.11 Total: -1.00 -30.51 272.93 -7.16 -37.67 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -3.71 Total: -0.21 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -1.92 Total: -10.44 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: 0.60 Total: -32.56 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -1.22 Total: -14.86 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.51 -7.16 -37.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260185890.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.451 kcal (2) G-P(sol) polarization free energy of solvation -30.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds