Wall clock time and date at job start Mon Mar 30 2020 03:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09010 * 110.85966 * 302.64000 * 10 9 7 12 12 C 1.54910 * 110.97944 * 178.79096 * 10 9 7 13 13 O 1.44192 * 103.07398 * 206.33049 * 12 10 9 14 14 C 1.43363 * 107.29267 * 21.43337 * 13 12 10 15 15 H 1.09005 * 109.50950 * 240.86494 * 14 13 12 16 16 C 1.50694 * 109.63498 * 120.54823 * 14 13 12 17 17 C 1.38654 * 120.79372 * 240.35533 * 16 14 13 18 18 C 1.38200 * 119.16248 * 179.75358 * 17 16 14 19 19 N 1.31871 * 120.76919 * 0.53144 * 18 17 16 20 20 C 1.31873 * 121.72352 * 359.74435 * 19 18 17 21 21 C 1.38204 * 120.76224 * 359.97280 * 20 19 18 22 22 O 1.43751 * 108.78995 * 0.66764 * 14 13 12 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 25 25 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 26 26 H 1.09006 * 110.69444 * 324.72199 * 12 10 9 27 27 H 1.08999 * 110.70080 * 87.93157 * 12 10 9 28 28 H 1.08001 * 120.41530 * 0.02562 * 17 16 14 29 29 H 1.08001 * 119.61703 * 180.29902 * 18 17 16 30 30 H 1.07995 * 119.62290 * 179.97438 * 20 19 18 31 31 H 1.08004 * 120.41768 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9150 -3.5964 -0.8679 12 6 1.5063 -5.0235 0.0139 13 8 2.4669 -5.9050 0.6299 14 6 3.3840 -5.0868 1.3681 15 1 4.3912 -5.2226 0.9742 16 6 3.3525 -5.4772 2.8232 17 6 2.9899 -4.5590 3.7968 18 6 2.9676 -4.9548 5.1208 19 7 3.2959 -6.1853 5.4627 20 6 3.6511 -7.0832 4.5645 21 6 3.6911 -6.7617 3.2210 22 8 2.9924 -3.7107 1.2286 23 1 -0.4850 0.8401 -0.0004 24 1 0.6242 -2.5609 0.8844 25 1 0.6244 -2.5529 -0.8956 26 1 0.6004 -4.9594 0.6168 27 1 1.2739 -5.3540 -0.9984 28 1 2.7240 -3.5486 3.5235 29 1 2.6816 -4.2469 5.8847 30 1 3.9137 -8.0814 4.8824 31 1 3.9831 -7.5013 2.4902 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260185890.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:45 Heat of formation + Delta-G solvation = -77.644818 kcal Electronic energy + Delta-G solvation = -16208.343531 eV Core-core repulsion = 13453.971114 eV Total energy + Delta-G solvation = -2754.372417 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.75894 -40.57716 -36.29704 -35.35223 -34.23343 -32.29584 -32.10785 -28.81653 -26.64222 -25.17871 -24.35934 -22.91738 -22.27995 -18.86461 -18.33735 -18.07821 -17.59069 -16.77577 -16.53924 -16.41205 -16.04176 -15.41202 -14.90629 -14.57979 -14.51114 -14.30505 -13.90164 -13.65665 -13.32042 -13.15809 -12.57129 -12.56166 -12.35696 -11.74868 -11.26001 -11.07518 -10.94649 -10.71158 -10.61030 -10.38810 -10.10919 -8.22870 -6.31686 0.12977 0.18061 1.39032 1.40638 1.53091 2.39470 2.42456 2.76128 2.91843 3.12698 3.56227 3.62335 3.78074 3.93101 4.03689 4.12973 4.19924 4.22329 4.32496 4.61982 4.67035 4.73124 4.88022 4.91465 5.01114 5.28299 5.34727 5.51594 5.72727 5.73797 6.06633 6.19165 6.80268 6.95620 7.36449 8.89081 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.031595 B = 0.006368 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.998235 B = 4395.661910 C = 4915.734755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.961 3.039 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.280 1.280 7 C -0.531 4.531 8 H 0.056 0.944 9 C 0.033 3.967 10 C 0.062 3.938 11 H 0.085 0.915 12 C 0.030 3.970 13 O -0.385 6.385 14 C 0.264 3.736 15 H 0.112 0.888 16 C -0.080 4.080 17 C -0.157 4.157 18 C 0.088 3.912 19 N -0.502 5.502 20 C 0.092 3.908 21 C -0.145 4.145 22 O -0.379 6.379 23 H 0.264 0.736 24 H 0.000 1.000 25 H 0.027 0.973 26 H 0.066 0.934 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.175 0.825 30 H 0.192 0.808 31 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.822 -12.634 3.937 14.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.786 3.214 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.206 1.206 7 C -0.569 4.569 8 H 0.074 0.926 9 C -0.004 4.004 10 C 0.006 3.994 11 H 0.103 0.897 12 C -0.046 4.046 13 O -0.306 6.306 14 C 0.169 3.831 15 H 0.129 0.871 16 C -0.089 4.089 17 C -0.177 4.177 18 C -0.067 4.067 19 N -0.211 5.211 20 C -0.065 4.065 21 C -0.164 4.164 22 O -0.299 6.299 23 H 0.073 0.927 24 H 0.018 0.982 25 H 0.046 0.954 26 H 0.084 0.916 27 H 0.146 0.854 28 H 0.146 0.854 29 H 0.192 0.808 30 H 0.209 0.791 31 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.714 -12.800 4.941 15.275 hybrid contribution 0.002 1.517 -1.016 1.826 sum 6.715 -11.283 3.926 13.704 Atomic orbital electron populations 1.70065 1.07541 1.27787 1.51714 1.25851 0.95711 1.03017 0.94792 0.85450 0.78979 0.79119 0.77816 1.19046 1.20067 1.20621 1.21462 0.93284 0.91817 1.50289 0.92604 1.18997 0.93226 0.91609 0.96575 1.24112 0.93083 0.95976 0.86245 0.89678 1.24365 0.92013 0.88053 1.00187 1.88795 1.42641 1.32004 1.67132 1.22793 0.94368 0.77278 0.88669 0.87053 1.20728 0.97733 0.95334 0.95079 1.22137 0.99779 1.01383 0.94380 1.23030 0.95526 0.93385 0.94793 1.67725 1.11179 1.02810 1.39425 1.23302 0.94732 0.99847 0.88637 1.22150 0.99978 0.95690 0.98590 1.89322 1.73422 1.24588 1.42617 0.92671 0.98183 0.95449 0.91562 0.85433 0.85416 0.80839 0.79109 0.82146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.11 13.29 21.45 0.28 -54.82 16 2 C 0.00 0.24 5.46 84.66 0.46 0.70 16 3 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 7 C -0.53 -29.53 8.96 25.60 0.23 -29.30 16 8 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 9 C 0.03 1.65 4.77 29.85 0.14 1.80 16 10 C 0.06 2.49 3.46 31.25 0.11 2.59 16 11 H 0.09 3.20 8.14 -2.38 -0.02 3.18 16 12 C 0.03 0.97 7.54 72.63 0.55 1.52 16 13 O -0.38 -12.24 11.12 -126.22 -1.40 -13.65 16 14 C 0.26 8.52 4.33 71.23 0.31 8.83 16 15 H 0.11 3.10 8.14 -2.38 -0.02 3.08 16 16 C -0.08 -2.43 5.60 -19.67 -0.11 -2.54 16 17 C -0.16 -5.02 9.45 22.36 0.21 -4.80 16 18 C 0.09 2.48 11.18 84.68 0.95 3.43 16 19 N -0.50 -13.68 10.36 -195.85 -2.03 -15.71 16 20 C 0.09 2.06 11.18 84.68 0.95 3.01 16 21 C -0.14 -3.45 9.76 22.36 0.22 -3.23 16 22 O -0.38 -15.38 9.51 -126.22 -1.20 -16.58 16 23 H 0.26 14.71 8.31 -92.70 -0.77 13.94 16 24 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 25 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.07 2.27 8.04 -2.38 -0.02 2.25 16 27 H 0.13 3.36 8.14 -2.39 -0.02 3.34 16 28 H 0.13 4.60 7.12 -2.91 -0.02 4.58 16 29 H 0.17 4.01 8.06 -2.91 -0.02 3.98 16 30 H 0.19 2.75 8.06 -2.91 -0.02 2.73 16 31 H 0.16 2.94 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -65.60 272.93 2.81 -62.79 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 1.12 Total: 10.00 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: 4.01 Total: -18.00 kcal Atomic # 7 Polarization: -68.79 SS G_CDS: -1.74 Total: -70.54 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -2.60 Total: -30.23 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -65.60 2.81 -62.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260185890.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.859 kcal (2) G-P(sol) polarization free energy of solvation -65.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds