Wall clock time and date at job start Mon Mar 30 2020 03:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.39856 * 125.39189 * 2 1 4 4 C 1.30905 * 109.99401 * 179.97438 * 3 2 1 5 5 N 1.39124 * 126.18997 * 179.97438 * 4 3 2 6 6 C 1.36814 * 120.00072 * 0.02562 * 5 4 3 7 7 H 1.08002 * 120.00288 * 0.02562 * 6 5 4 8 8 C 1.38731 * 120.00122 * 179.72316 * 6 5 4 9 9 N 1.31634 * 119.99605 * 0.27939 * 8 6 5 10 10 Si 1.86798 * 120.00424 * 180.28119 * 8 6 5 11 11 H 1.48508 * 109.46605 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47276 * 119.99934 * 10 8 6 13 13 H 1.48498 * 109.47150 * 240.00144 * 10 8 6 14 14 C 1.46472 * 107.61876 * 0.24796 * 4 3 2 15 15 C 1.39769 * 133.96097 * 179.76218 * 14 4 3 16 16 C 1.36731 * 119.63858 * 179.97438 * 15 14 4 17 17 F 1.35102 * 119.72332 * 180.02562 * 16 15 14 18 18 C 1.39093 * 120.54730 * 359.97438 * 16 15 14 19 19 C 1.36617 * 120.76584 * 359.60776 * 18 16 15 20 20 C 1.37203 * 125.39585 * 179.97438 * 2 1 3 21 21 H 1.08995 * 109.47548 * 90.02611 * 1 2 3 22 22 H 1.09002 * 109.46472 * 210.02156 * 1 2 3 23 23 H 1.08999 * 109.46761 * 330.01514 * 1 2 3 24 24 H 0.97001 * 119.99655 * 180.02562 * 5 4 3 25 25 H 0.97005 * 119.99727 * 179.97438 * 9 8 6 26 26 H 1.08002 * 120.17988 * 359.96891 * 15 14 4 27 27 H 1.07998 * 119.61773 * 180.02562 * 18 16 15 28 28 H 1.08003 * 120.05939 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2750 1.1401 0.0000 4 6 3.5371 0.7925 0.0006 5 7 4.6272 1.6569 0.0002 6 6 4.4270 3.0104 -0.0002 7 1 3.4228 3.4078 0.0001 8 6 5.5141 3.8723 0.0052 9 7 6.7380 3.3879 0.0053 10 14 5.2409 5.7202 0.0126 11 1 3.7834 6.0050 0.0107 12 1 5.8589 6.3072 1.2285 13 1 5.8630 6.3174 -1.1964 14 6 3.5938 -0.6711 -0.0051 15 6 4.6367 -1.6016 -0.0113 16 6 4.3501 -2.9385 -0.0151 17 9 5.3569 -3.8394 -0.0206 18 6 3.0306 -3.3786 -0.0122 19 6 1.9963 -2.4862 0.0025 20 6 2.2597 -1.1184 0.0005 21 1 -0.3634 -0.0005 -1.0276 22 1 -0.3632 -0.8898 0.5142 23 1 -0.3633 0.8901 0.5136 24 1 5.5291 1.3000 0.0003 25 1 7.4981 3.9906 0.0088 26 1 5.6634 -1.2664 -0.0133 27 1 2.8214 -4.4381 -0.0148 28 1 0.9761 -2.8406 0.0042 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260352174.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:12 Heat of formation + Delta-G solvation = 48.693182 kcal Electronic energy + Delta-G solvation = -15692.229409 eV Core-core repulsion = 12852.167865 eV Total energy + Delta-G solvation = -2840.061544 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 235.082 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.33072 -40.36831 -36.41031 -35.35214 -32.62965 -30.72471 -29.83176 -28.79886 -25.71936 -24.19070 -22.65681 -21.34304 -19.59237 -18.03461 -17.05709 -16.58409 -15.86865 -15.20904 -14.95038 -14.63805 -14.44100 -14.02236 -13.82619 -13.31570 -12.83166 -12.66788 -12.46502 -11.93598 -11.55183 -11.54684 -11.01249 -10.75594 -10.45623 -10.25317 -10.16780 -9.43251 -9.20879 -8.44661 -7.80537 -6.70870 -6.46439 -3.71255 1.39449 1.81133 3.12587 3.17319 3.24427 3.30526 3.57545 4.11158 4.16268 4.68354 4.85783 4.93156 5.17447 5.19348 5.24730 5.56555 5.62495 5.70614 5.80276 5.96970 6.12451 6.42365 6.51164 6.55547 6.97197 7.30075 7.49613 7.77123 7.87104 8.61005 8.93002 9.35948 9.68116 10.71090 Molecular weight = 235.08amu Principal moments of inertia in cm(-1) A = 0.028144 B = 0.007279 C = 0.005801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.648783 B = 3845.698622 C = 4825.195030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.413 5.413 3 N -0.365 5.365 4 C 0.333 3.667 5 N -0.532 5.532 6 C -0.281 4.281 7 H 0.104 0.896 8 C 0.016 3.984 9 N -0.900 5.900 10 Si 0.933 3.067 11 H -0.268 1.268 12 H -0.281 1.281 13 H -0.281 1.281 14 C -0.165 4.165 15 C -0.064 4.064 16 C 0.018 3.982 17 F -0.152 7.152 18 C -0.100 4.100 19 C -0.143 4.143 20 C 0.144 3.856 21 H 0.057 0.943 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.409 0.591 25 H 0.272 0.728 26 H 0.132 0.868 27 H 0.130 0.870 28 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.705 -9.337 0.084 12.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.197 5.197 3 N -0.203 5.203 4 C 0.067 3.933 5 N -0.154 5.154 6 C -0.412 4.412 7 H 0.122 0.878 8 C -0.186 4.186 9 N -0.540 5.540 10 Si 0.760 3.240 11 H -0.193 1.193 12 H -0.207 1.207 13 H -0.207 1.207 14 C -0.176 4.176 15 C -0.086 4.086 16 C -0.004 4.004 17 F -0.131 7.131 18 C -0.121 4.121 19 C -0.166 4.166 20 C 0.023 3.977 21 H 0.075 0.925 22 H 0.089 0.911 23 H 0.098 0.902 24 H 0.246 0.754 25 H 0.082 0.918 26 H 0.150 0.850 27 H 0.148 0.852 28 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.454 -8.061 0.085 11.681 hybrid contribution 1.029 -0.071 -0.007 1.031 sum -7.425 -8.132 0.078 11.012 Atomic orbital electron populations 1.21415 0.75707 1.02967 1.01726 1.47787 1.04792 1.01047 1.66088 1.77153 0.99176 1.02997 1.41001 1.20235 0.89166 0.85829 0.98096 1.39969 1.02995 1.03948 1.68489 1.19740 0.94986 0.79990 1.46523 0.87827 1.25237 0.94636 1.00778 0.97980 1.69695 0.97890 1.36103 1.50325 0.85735 0.78639 0.81836 0.77778 1.19254 1.20735 1.20737 1.19406 0.92549 0.92486 1.13159 1.20199 0.99370 0.90599 0.98399 1.16795 0.84564 0.86122 1.12928 1.91425 1.59606 1.66995 1.95116 1.20437 0.90715 0.99844 1.01080 1.19444 0.98984 0.88948 1.09214 1.18831 0.90676 0.89585 0.98567 0.92498 0.91102 0.90159 0.75445 0.91770 0.85038 0.85215 0.85721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.67 11.39 59.85 0.68 2.36 15 2 N -0.41 -7.95 4.05 -65.46 -0.27 -8.22 15 3 N -0.37 -8.62 11.76 32.51 0.38 -8.24 15 4 C 0.33 7.95 8.07 -153.18 -1.24 6.72 15 5 N -0.53 -13.55 5.45 -9.54 -0.05 -13.60 15 6 C -0.28 -7.57 9.81 -15.15 -0.15 -7.72 15 7 H 0.10 2.83 7.41 -52.49 -0.39 2.44 15 8 C 0.02 0.43 5.50 -17.45 -0.10 0.33 15 9 N -0.90 -24.38 13.05 55.49 0.72 -23.65 15 10 Si 0.93 20.61 29.55 -169.99 -5.02 15.59 15 11 H -0.27 -5.85 7.11 56.52 0.40 -5.45 15 12 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 13 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 14 C -0.17 -3.43 6.37 -105.07 -0.67 -4.10 15 15 C -0.06 -1.19 10.03 -39.55 -0.40 -1.59 15 16 C 0.02 0.30 7.24 -39.81 -0.29 0.01 15 17 F -0.15 -2.52 17.25 2.25 0.04 -2.48 15 18 C -0.10 -1.44 9.94 -39.85 -0.40 -1.84 15 19 C -0.14 -2.11 9.95 -39.78 -0.40 -2.51 15 20 C 0.14 2.68 6.86 -84.14 -0.58 2.10 15 21 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 22 H 0.07 0.73 8.13 -51.93 -0.42 0.31 15 23 H 0.08 1.04 8.14 -51.93 -0.42 0.62 15 24 H 0.41 10.28 8.01 -40.82 -0.33 9.95 15 25 H 0.27 6.97 8.31 -40.82 -0.34 6.63 15 26 H 0.13 2.32 8.06 -52.49 -0.42 1.90 15 27 H 0.13 1.47 8.06 -52.49 -0.42 1.04 15 28 H 0.12 1.42 8.06 -52.48 -0.42 1.00 15 LS Contribution 259.92 15.07 3.92 3.92 Total: -1.00 -29.55 259.92 -6.19 -35.73 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -2.39 Total: 7.18 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -3.52 Total: -6.24 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: 0.79 Total: -53.71 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.04 Total: -2.48 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.55 -6.19 -35.73 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260352174.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.427 kcal (2) G-P(sol) polarization free energy of solvation -29.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds