Wall clock time and date at job start Mon Mar 30 2020 03:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38287 * 119.98301 * 2 1 4 4 C 1.38208 * 120.14398 * 179.97438 * 3 2 1 5 5 C 1.38279 * 120.14381 * 0.02562 * 4 3 2 6 6 C 1.50694 * 119.98578 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.47166 * 219.99596 * 6 5 4 8 8 N 1.46898 * 109.47052 * 339.99452 * 6 5 4 9 9 C 1.50698 * 109.47118 * 99.99372 * 6 5 4 10 10 H 1.07994 * 120.00547 * 0.02562 * 9 6 5 11 11 C 1.37881 * 120.00074 * 179.97438 * 9 6 5 12 12 N 1.31522 * 119.99845 * 0.02562 * 11 9 6 13 13 Si 1.86797 * 120.00110 * 179.97438 * 11 9 6 14 14 H 1.48496 * 109.47332 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46775 * 120.00129 * 13 11 9 16 16 H 1.48498 * 109.47230 * 240.00100 * 13 11 9 17 17 C 1.38507 * 120.02666 * 359.97438 * 5 4 3 18 18 C 1.38503 * 119.98853 * 179.97438 * 2 1 3 19 19 O 1.36495 * 131.53728 * 0.02729 * 18 2 1 20 20 C 1.43989 * 105.48480 * 197.26497 * 19 18 2 21 21 O 1.36505 * 131.53900 * 180.02562 * 17 5 4 22 22 H 1.08997 * 109.47277 * 270.01949 * 1 2 3 23 23 H 1.08999 * 109.47722 * 30.02470 * 1 2 3 24 24 H 1.09004 * 109.47107 * 150.02722 * 1 2 3 25 25 H 1.08004 * 119.92455 * 359.97438 * 3 2 1 26 26 H 1.07993 * 119.92631 * 180.02562 * 4 3 2 27 27 H 1.00893 * 111.00133 * 60.00162 * 8 6 5 28 28 H 1.00905 * 111.00293 * 183.95297 * 8 6 5 29 29 H 0.97003 * 119.99809 * 179.97438 * 12 11 9 30 30 H 1.09002 * 110.57340 * 214.30965 * 20 19 18 31 31 H 1.09001 * 110.57366 * 91.43514 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1978 0.0000 4 6 3.5801 1.2017 0.0005 5 6 4.2779 0.0079 0.0005 6 6 5.7848 0.0162 0.0005 7 1 6.1525 -0.7690 -0.6600 8 7 6.2672 1.3204 -0.4733 9 6 6.2885 -0.2275 1.3998 10 1 5.5876 -0.3743 2.2082 11 6 7.6443 -0.2642 1.6478 12 7 8.4980 -0.0860 0.6633 13 14 8.2687 -0.5657 3.3824 14 1 7.1146 -0.7336 4.3017 15 1 9.1000 -1.7961 3.4023 16 1 9.0878 0.5924 3.8219 17 6 3.5923 -1.1956 0.0005 18 6 2.1992 -1.1996 0.0005 19 8 1.7667 -2.4942 0.0006 20 6 2.9016 -3.2786 0.4131 21 8 4.0320 -2.4879 0.0010 22 1 -0.3634 0.0003 1.0276 23 1 -0.3634 0.8897 -0.5142 24 1 -0.3633 -0.8903 -0.5134 25 1 1.6565 2.1323 -0.0004 26 1 4.1163 2.1391 0.0010 27 1 5.9396 2.0655 0.1229 28 1 7.2737 1.3298 -0.5438 29 1 9.4518 -0.1114 0.8379 30 1 2.9044 -4.2439 -0.0932 31 1 2.9019 -3.4125 1.4949 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260389208.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:05 Heat of formation + Delta-G solvation = -63.271047 kcal Electronic energy + Delta-G solvation = -16657.278005 eV Core-core repulsion = 13903.528882 eV Total energy + Delta-G solvation = -2753.749123 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.00992 -39.22584 -37.44385 -36.38279 -33.88463 -32.08920 -30.85670 -28.56904 -27.20184 -26.62630 -23.99706 -23.72686 -21.62669 -18.80721 -18.62765 -18.37169 -18.08998 -17.16275 -16.47919 -15.83438 -15.34979 -15.16567 -14.82377 -14.60646 -14.38692 -13.97434 -13.82571 -13.70068 -13.24389 -12.99181 -12.84340 -12.77320 -12.55829 -12.24160 -12.02641 -11.52731 -11.42453 -10.76060 -9.38764 -9.15729 -8.93042 -8.14958 -6.41165 0.32662 0.41484 1.33155 1.35548 1.47113 1.95191 2.33285 2.68798 2.80069 3.01324 3.59313 3.87720 4.01077 4.13261 4.27751 4.34720 4.42641 4.62288 4.67674 4.79087 4.87542 5.02789 5.12645 5.34547 5.42584 5.55699 5.61715 5.71285 5.83230 5.99462 6.32438 6.60263 6.86440 7.09009 7.34643 8.79968 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.029259 B = 0.008420 C = 0.007444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.734142 B = 3324.780611 C = 3760.352673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.090 4.090 3 C -0.105 4.105 4 C -0.105 4.105 5 C -0.054 4.054 6 C 0.251 3.749 7 H 0.001 0.999 8 N -0.838 5.838 9 C -0.552 4.552 10 H 0.041 0.959 11 C 0.021 3.979 12 N -0.917 5.917 13 Si 0.961 3.039 14 H -0.273 1.273 15 H -0.280 1.280 16 H -0.271 1.271 17 C 0.005 3.995 18 C 0.010 3.990 19 O -0.317 6.317 20 C 0.204 3.796 21 O -0.333 6.333 22 H 0.080 0.920 23 H 0.094 0.906 24 H 0.061 0.939 25 H 0.174 0.826 26 H 0.145 0.855 27 H 0.323 0.677 28 H 0.346 0.654 29 H 0.269 0.731 30 H 0.160 0.840 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.564 0.210 0.793 13.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.091 4.091 3 C -0.123 4.123 4 C -0.124 4.124 5 C -0.056 4.056 6 C 0.141 3.859 7 H 0.018 0.982 8 N -0.368 5.368 9 C -0.591 4.591 10 H 0.060 0.940 11 C -0.179 4.179 12 N -0.556 5.556 13 Si 0.787 3.213 14 H -0.198 1.198 15 H -0.206 1.206 16 H -0.197 1.197 17 C -0.040 4.040 18 C -0.034 4.034 19 O -0.234 6.234 20 C 0.093 3.907 21 O -0.250 6.250 22 H 0.098 0.902 23 H 0.112 0.888 24 H 0.080 0.920 25 H 0.191 0.809 26 H 0.163 0.837 27 H 0.134 0.866 28 H 0.161 0.839 29 H 0.078 0.922 30 H 0.177 0.823 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.787 -0.162 -0.036 13.788 hybrid contribution 1.589 -0.803 1.723 2.478 sum -12.198 -0.965 1.687 12.352 Atomic orbital electron populations 1.20685 0.87750 1.03738 1.03272 1.19303 0.98068 0.88081 1.03658 1.21197 0.93002 0.97774 1.00284 1.20984 0.94440 0.96768 1.00172 1.19558 0.97054 0.89957 0.98994 1.17556 0.86385 0.89322 0.92674 0.98159 1.59495 1.17880 1.04549 1.54872 1.21917 0.92037 1.50372 0.94801 0.94018 1.25764 0.96815 0.94143 1.01174 1.69855 1.02731 1.50310 1.32738 0.85462 0.78085 0.78049 0.79742 1.19792 1.20593 1.19672 1.19846 0.92079 0.85629 1.06420 1.19836 0.90653 0.86345 1.06586 1.87203 1.36405 1.14333 1.85441 1.25973 0.69994 0.93668 1.01087 1.87369 1.37164 1.15241 1.85203 0.90155 0.88768 0.92035 0.80888 0.83728 0.86631 0.83887 0.92198 0.82269 0.89265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.11 10.01 71.24 0.71 -1.40 16 2 C -0.09 -2.80 5.89 -19.79 -0.12 -2.92 16 3 C -0.10 -3.12 9.69 22.27 0.22 -2.90 16 4 C -0.11 -3.97 9.25 22.27 0.21 -3.76 16 5 C -0.05 -2.53 5.03 -19.79 -0.10 -2.63 16 6 C 0.25 13.49 2.94 43.42 0.13 13.62 16 7 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 8 N -0.84 -41.01 8.66 -174.97 -1.52 -42.53 16 9 C -0.55 -31.22 8.70 25.60 0.22 -31.00 16 10 H 0.04 2.41 7.74 -2.91 -0.02 2.38 16 11 C 0.02 1.17 5.38 84.65 0.46 1.62 16 12 N -0.92 -52.18 11.54 21.45 0.25 -51.94 16 13 Si 0.96 43.83 29.54 68.60 2.03 45.86 16 14 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 15 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 16 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 17 C 0.00 0.20 6.84 22.59 0.15 0.36 16 18 C 0.01 0.37 6.81 22.59 0.15 0.53 16 19 O -0.32 -10.86 11.39 -75.99 -0.87 -11.73 16 20 C 0.20 6.45 8.89 113.37 1.01 7.46 16 21 O -0.33 -14.83 11.39 -76.11 -0.87 -15.70 16 22 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.09 1.51 8.09 -2.39 -0.02 1.49 16 24 H 0.06 1.36 8.08 -2.38 -0.02 1.34 16 25 H 0.17 3.52 8.06 -2.91 -0.02 3.49 16 26 H 0.15 5.05 6.24 -2.91 -0.02 5.03 16 27 H 0.32 14.37 7.28 -89.70 -0.65 13.72 16 28 H 0.35 18.22 7.08 -89.69 -0.63 17.59 16 29 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 30 H 0.16 3.65 8.14 -2.39 -0.02 3.63 16 31 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -67.32 266.72 1.95 -65.38 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: -0.12 Total: 31.68 kcal Atomic # 6 Polarization: -24.06 SS G_CDS: 3.04 Total: -21.02 kcal Atomic # 7 Polarization: -93.20 SS G_CDS: -1.27 Total: -94.46 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -1.73 Total: -27.43 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -67.32 1.95 -65.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260389208.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.105 kcal (2) G-P(sol) polarization free energy of solvation -67.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds