Wall clock time and date at job start Mon Mar 30 2020 02:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86807 * 120.00385 * 2 1 4 4 H 1.48496 * 109.47284 * 240.00468 * 3 2 1 5 5 H 1.48497 * 109.46836 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46984 * 120.00255 * 3 2 1 7 7 C 1.37884 * 120.00288 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00540 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99202 * 359.97438 * 7 2 1 10 10 H 1.08992 * 109.47454 * 300.00091 * 9 7 2 11 11 N 1.46905 * 109.47141 * 60.00499 * 9 7 2 12 12 C 1.50705 * 109.46581 * 179.97438 * 9 7 2 13 13 C 1.35136 * 126.41164 * 275.22873 * 12 9 7 14 14 N 1.33477 * 108.61569 * 180.02562 * 13 12 9 15 15 C 1.32566 * 109.15375 * 0.02562 * 14 13 12 16 16 C 1.41124 * 132.33151 * 180.02562 * 15 14 13 17 17 F 1.35108 * 120.35178 * 0.20287 * 16 15 14 18 18 C 1.36196 * 119.29691 * 179.97438 * 16 15 14 19 19 C 1.40488 * 119.66876 * 359.97438 * 18 16 15 20 20 C 1.34914 * 120.32084 * 0.02562 * 19 18 16 21 21 N 1.36579 * 120.65509 * 359.95510 * 20 19 18 22 22 H 0.96999 * 119.99667 * 359.97438 * 1 2 3 23 23 H 1.00898 * 111.00093 * 56.49924 * 11 9 7 24 24 H 1.00900 * 110.99775 * 180.45997 * 11 9 7 25 25 H 1.08001 * 125.69107 * 0.02562 * 13 12 9 26 26 H 1.07992 * 120.16784 * 180.02562 * 18 16 15 27 27 H 1.07997 * 119.83463 * 180.02562 * 19 18 16 28 28 H 1.08005 * 119.67388 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8896 11 7 0.4059 -2.5767 -1.1998 12 6 2.2302 -3.6446 -0.0018 13 6 2.8260 -4.1894 -1.0855 14 7 3.6235 -5.1801 -0.6804 15 6 3.5524 -5.2837 0.6393 16 6 4.1811 -6.1490 1.5599 17 9 5.0461 -7.0930 1.1285 18 6 3.9103 -6.0194 2.8884 19 6 3.0126 -5.0293 3.3217 20 6 2.4197 -4.2098 2.4290 21 7 2.6820 -4.3279 1.0939 22 1 -0.4849 0.8401 0.0004 23 1 0.9569 -2.4680 -2.0380 24 1 -0.1158 -3.4401 -1.2193 25 1 2.6810 -3.8756 -2.1087 26 1 4.3838 -6.6738 3.6052 27 1 2.7962 -4.9239 4.3745 28 1 1.7309 -3.4525 2.7736 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260720188.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:58 Heat of formation + Delta-G solvation = 26.031095 kcal Electronic energy + Delta-G solvation = -16053.978879 eV Core-core repulsion = 13212.934634 eV Total energy + Delta-G solvation = -2841.044246 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 235.082 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.01428 -43.78730 -38.38662 -36.56949 -34.21060 -33.45998 -30.94320 -29.53220 -27.99998 -24.89242 -24.41477 -23.58335 -21.63146 -18.94524 -18.60170 -18.48822 -17.32671 -17.28281 -16.76887 -16.47124 -16.06204 -15.86726 -15.52271 -14.75742 -14.50262 -14.24954 -13.64906 -13.17421 -13.01522 -12.88117 -12.74610 -12.72739 -12.08266 -11.75769 -11.28213 -11.19622 -10.60073 -9.82747 -9.19818 -8.66832 -8.03635 -6.27486 -0.35684 0.24654 1.43096 1.45367 1.51113 1.56006 1.86593 2.34422 2.45400 2.88980 3.19510 3.24122 3.70262 3.81826 3.94418 4.28564 4.33439 4.53278 4.57609 4.80215 4.92655 4.97700 5.37536 5.54963 5.58208 5.68986 5.99223 6.08625 6.53069 6.75148 6.96737 7.14748 7.45852 8.97947 Molecular weight = 235.08amu Principal moments of inertia in cm(-1) A = 0.034758 B = 0.007326 C = 0.006943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.387070 B = 3821.037503 C = 4031.872472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.047 3.953 3 Si 0.946 3.054 4 H -0.277 1.277 5 H -0.281 1.281 6 H -0.274 1.274 7 C -0.549 4.549 8 H 0.039 0.961 9 C 0.306 3.694 10 H 0.024 0.976 11 N -0.806 5.806 12 C -0.044 4.044 13 C -0.002 4.002 14 N -0.516 5.516 15 C 0.151 3.849 16 C 0.099 3.901 17 F -0.127 7.127 18 C -0.107 4.107 19 C -0.113 4.113 20 C 0.040 3.960 21 N -0.353 5.353 22 H 0.260 0.740 23 H 0.329 0.671 24 H 0.315 0.685 25 H 0.184 0.816 26 H 0.195 0.805 27 H 0.209 0.791 28 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.157 -9.065 8.200 12.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.158 4.158 3 Si 0.772 3.228 4 H -0.203 1.203 5 H -0.206 1.206 6 H -0.200 1.200 7 C -0.587 4.587 8 H 0.057 0.943 9 C 0.194 3.806 10 H 0.042 0.958 11 N -0.332 5.332 12 C -0.161 4.161 13 C -0.151 4.151 14 N -0.237 5.237 15 C -0.094 4.094 16 C 0.078 3.922 17 F -0.105 7.105 18 C -0.131 4.131 19 C -0.134 4.134 20 C -0.080 4.080 21 N -0.025 5.025 22 H 0.069 0.931 23 H 0.142 0.858 24 H 0.126 0.874 25 H 0.201 0.799 26 H 0.212 0.788 27 H 0.225 0.775 28 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 4.055 -8.767 7.916 12.489 hybrid contribution 0.656 0.495 -0.401 0.914 sum 4.710 -8.272 7.516 12.129 Atomic orbital electron populations 1.70174 1.06757 1.26888 1.46763 1.25537 0.95370 1.01352 0.93572 0.85836 0.78563 0.79863 0.78552 1.20280 1.20647 1.19951 1.20929 0.91720 0.90686 1.55407 0.94310 1.17321 0.85805 0.86328 0.91157 0.95819 1.59132 1.30284 1.39601 1.04222 1.23739 1.06432 1.00909 0.84981 1.22317 0.97564 0.95537 0.99709 1.70572 1.24094 1.21598 1.07396 1.21056 0.99852 0.96923 0.91576 1.16475 0.94534 0.89987 0.91250 1.91490 1.66726 1.61396 1.90904 1.21553 0.99052 1.00321 0.92158 1.21147 0.96501 0.93849 1.01859 1.22384 1.02837 1.02902 0.79922 1.42738 1.29321 1.23094 1.07377 0.93103 0.85805 0.87360 0.79863 0.78789 0.77466 0.80755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -47.95 12.77 21.45 0.27 -47.68 15 2 C 0.05 2.48 5.39 84.66 0.46 2.94 15 3 Si 0.95 42.09 29.54 68.60 2.03 44.12 15 4 H -0.28 -12.33 7.11 99.48 0.71 -11.62 15 5 H -0.28 -12.21 7.11 99.48 0.71 -11.50 15 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 15 7 C -0.55 -28.95 8.68 25.60 0.22 -28.73 15 8 H 0.04 2.12 7.74 -2.91 -0.02 2.10 15 9 C 0.31 14.50 3.03 43.42 0.13 14.64 15 10 H 0.02 1.22 7.96 -2.39 -0.02 1.20 15 11 N -0.81 -35.98 8.38 -174.94 -1.47 -37.45 15 12 C -0.04 -1.89 5.98 41.07 0.25 -1.65 15 13 C 0.00 -0.08 11.20 83.73 0.94 0.86 15 14 N -0.52 -22.48 11.32 -194.22 -2.20 -24.67 15 15 C 0.15 5.92 7.80 134.17 1.05 6.96 15 16 C 0.10 3.10 7.34 22.50 0.17 3.27 15 17 F -0.13 -4.02 17.28 44.97 0.78 -3.25 15 18 C -0.11 -2.23 10.04 22.34 0.22 -2.01 15 19 C -0.11 -2.23 9.98 22.05 0.22 -2.01 15 20 C 0.04 1.19 10.82 83.19 0.90 2.09 15 21 N -0.35 -13.56 2.95 -338.68 -1.00 -14.56 15 22 H 0.26 13.71 8.31 -92.71 -0.77 12.94 15 23 H 0.33 14.10 8.20 -89.70 -0.74 13.36 15 24 H 0.31 12.54 9.03 -89.69 -0.81 11.73 15 25 H 0.18 7.05 7.58 -2.91 -0.02 7.03 15 26 H 0.19 2.27 8.06 -2.91 -0.02 2.25 15 27 H 0.21 1.92 8.06 -2.91 -0.02 1.90 15 28 H 0.18 4.84 7.91 -2.91 -0.02 4.81 15 Total: -1.00 -66.78 256.66 2.64 -64.14 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: -0.33 Total: 22.98 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 4.55 Total: -3.64 kcal Atomic # 7 Polarization: -119.97 SS G_CDS: -4.39 Total: -124.36 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.78 Total: -3.25 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -66.78 2.64 -64.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260720188.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.175 kcal (2) G-P(sol) polarization free energy of solvation -66.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds