Wall clock time and date at job start Mon Mar 30 2020 02:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99796 * 2 1 4 4 H 1.48495 * 109.47326 * 269.99999 * 3 2 1 5 5 H 1.48509 * 109.47254 * 29.99541 * 3 2 1 6 6 H 1.48500 * 109.47348 * 149.99627 * 3 2 1 7 7 C 1.37875 * 120.00295 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00291 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00019 * 180.02562 * 7 2 1 10 10 H 1.09002 * 109.46830 * 60.00986 * 9 7 2 11 11 N 1.46900 * 109.47467 * 300.00810 * 9 7 2 12 12 C 1.50703 * 109.47252 * 180.02562 * 9 7 2 13 13 C 1.35127 * 126.40938 * 85.02590 * 12 9 7 14 14 N 1.33486 * 108.61243 * 179.97438 * 13 12 9 15 15 C 1.32567 * 109.15496 * 359.97438 * 14 13 12 16 16 C 1.41123 * 132.32670 * 179.97438 * 15 14 13 17 17 F 1.35100 * 120.35609 * 359.97438 * 16 15 14 18 18 C 1.36195 * 119.29181 * 180.02562 * 16 15 14 19 19 C 1.40482 * 119.67185 * 0.02562 * 18 16 15 20 20 C 1.34926 * 120.31966 * 359.97438 * 19 18 16 21 21 N 1.36574 * 120.65270 * 0.03881 * 20 19 18 22 22 H 0.96993 * 120.00448 * 0.02562 * 1 2 3 23 23 H 1.00896 * 111.00199 * 176.04832 * 11 9 7 24 24 H 1.00904 * 110.99701 * 299.99831 * 11 9 7 25 25 H 1.07996 * 125.69372 * 0.02800 * 13 12 9 26 26 H 1.08002 * 120.16907 * 179.73076 * 18 16 15 27 27 H 1.07998 * 119.84005 * 179.97438 * 19 18 16 28 28 H 1.07998 * 119.66895 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1294 0.0005 9 6 3.5116 -1.1939 0.0011 10 1 3.8745 -0.6800 0.8912 11 7 4.0018 -0.5015 -1.1982 12 6 4.0140 -2.6147 0.0010 13 6 4.1930 -3.4021 -1.0825 14 7 4.6504 -4.5885 -0.6762 15 6 4.7696 -4.5798 0.6441 16 6 5.2005 -5.5577 1.5658 17 9 5.5910 -6.7771 1.1348 18 6 5.2176 -5.2594 2.8945 19 6 4.8070 -3.9874 3.3271 20 6 4.3976 -3.0633 2.4332 21 7 4.3750 -3.3484 1.0978 22 1 -0.4850 0.8399 -0.0004 23 1 5.0082 -0.4314 -1.1893 24 1 3.6786 -0.9592 -2.0374 25 1 3.9991 -3.1185 -2.1064 26 1 5.5406 -5.9986 3.6127 27 1 4.8190 -3.7481 4.3801 28 1 4.0838 -2.0889 2.7774 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260720193.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:59 Heat of formation + Delta-G solvation = 22.992083 kcal Electronic energy + Delta-G solvation = -16100.334998 eV Core-core repulsion = 13259.158971 eV Total energy + Delta-G solvation = -2841.176027 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 235.082 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.03166 -43.84180 -38.44315 -36.78531 -34.29172 -33.82524 -31.00296 -29.65391 -28.33211 -24.88365 -24.38846 -23.59912 -21.58205 -19.12243 -18.94734 -18.51605 -17.38301 -17.36966 -16.77439 -16.61173 -16.02830 -15.93069 -15.66080 -15.08809 -14.52213 -14.28984 -13.88851 -13.29425 -13.04690 -12.93628 -12.72078 -12.68811 -11.95929 -11.69131 -11.44852 -11.21393 -10.78667 -9.86920 -9.61562 -8.71461 -8.27875 -6.45075 -0.37906 0.20164 1.48877 1.53173 1.60750 1.72885 1.82624 2.32139 2.50367 2.86488 3.06233 3.20488 3.66663 3.76981 3.91221 4.06909 4.16065 4.41533 4.54601 4.71084 4.90345 4.94604 5.13773 5.40683 5.50399 5.55788 5.98224 6.07662 6.33564 6.67332 6.70395 6.87974 7.32238 8.85307 Molecular weight = 235.08amu Principal moments of inertia in cm(-1) A = 0.039053 B = 0.007580 C = 0.007094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.796425 B = 3693.169424 C = 3946.019153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.034 3.966 3 Si 1.003 2.997 4 H -0.275 1.275 5 H -0.323 1.323 6 H -0.253 1.253 7 C -0.521 4.521 8 H 0.021 0.979 9 C 0.272 3.728 10 H 0.054 0.946 11 N -0.830 5.830 12 C -0.044 4.044 13 C 0.004 3.996 14 N -0.517 5.517 15 C 0.155 3.845 16 C 0.099 3.901 17 F -0.127 7.127 18 C -0.106 4.106 19 C -0.112 4.112 20 C 0.038 3.962 21 N -0.351 5.351 22 H 0.268 0.732 23 H 0.337 0.663 24 H 0.346 0.654 25 H 0.188 0.812 26 H 0.195 0.805 27 H 0.210 0.790 28 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.884 -5.025 8.177 16.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.166 4.166 3 Si 0.832 3.168 4 H -0.201 1.201 5 H -0.253 1.253 6 H -0.178 1.178 7 C -0.559 4.559 8 H 0.039 0.961 9 C 0.160 3.840 10 H 0.072 0.928 11 N -0.361 5.361 12 C -0.160 4.160 13 C -0.145 4.145 14 N -0.238 5.238 15 C -0.090 4.090 16 C 0.077 3.923 17 F -0.105 7.105 18 C -0.130 4.130 19 C -0.132 4.132 20 C -0.083 4.083 21 N -0.024 5.024 22 H 0.076 0.924 23 H 0.150 0.850 24 H 0.160 0.840 25 H 0.205 0.795 26 H 0.212 0.788 27 H 0.227 0.773 28 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 12.509 -4.955 7.861 15.582 hybrid contribution -0.065 0.045 -0.411 0.418 sum 12.444 -4.910 7.450 15.312 Atomic orbital electron populations 1.70077 1.08762 1.28550 1.50886 1.25859 0.95148 1.03625 0.92018 0.84816 0.77511 0.76047 0.78440 1.20110 1.25269 1.17757 1.20818 0.89484 0.92600 1.53002 0.96052 1.17774 0.93023 0.81237 0.91945 0.92849 1.59188 1.15159 1.56430 1.05312 1.23077 1.08146 0.99681 0.85108 1.22385 1.03193 0.89102 0.99863 1.70595 1.22433 1.23362 1.07381 1.21041 1.08324 0.88072 0.91559 1.16487 1.04737 0.79842 0.91270 1.91491 1.88470 1.39637 1.90914 1.21578 0.99685 0.99602 0.92160 1.21180 0.99396 0.90685 1.01958 1.22456 1.02167 1.03925 0.79761 1.42693 1.40945 1.11380 1.07361 0.92365 0.84963 0.84003 0.79504 0.78809 0.77338 0.80166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.34 13.96 21.45 0.30 -57.04 15 2 C 0.03 1.86 5.47 84.65 0.46 2.33 15 3 Si 1.00 45.66 26.03 68.60 1.79 47.44 15 4 H -0.28 -12.41 7.11 99.48 0.71 -11.70 15 5 H -0.32 -14.93 7.11 99.48 0.71 -14.22 15 6 H -0.25 -10.50 6.54 99.48 0.65 -9.85 15 7 C -0.52 -28.22 9.29 25.60 0.24 -27.98 15 8 H 0.02 1.34 7.98 -2.91 -0.02 1.32 15 9 C 0.27 11.60 2.51 43.42 0.11 11.71 15 10 H 0.05 2.23 7.03 -2.39 -0.02 2.21 15 11 N -0.83 -30.96 6.62 -174.95 -1.16 -32.12 15 12 C -0.04 -1.78 6.00 41.07 0.25 -1.53 15 13 C 0.00 0.18 11.17 83.72 0.94 1.12 15 14 N -0.52 -21.91 11.32 -194.23 -2.20 -24.11 15 15 C 0.15 5.90 7.80 134.17 1.05 6.94 15 16 C 0.10 2.99 7.34 22.50 0.17 3.16 15 17 F -0.13 -3.95 17.28 44.97 0.78 -3.18 15 18 C -0.11 -2.13 10.04 22.34 0.22 -1.90 15 19 C -0.11 -2.05 9.98 22.06 0.22 -1.83 15 20 C 0.04 1.03 10.82 83.19 0.90 1.93 15 21 N -0.35 -12.86 2.95 -338.69 -1.00 -13.86 15 22 H 0.27 15.26 8.31 -92.71 -0.77 14.49 15 23 H 0.34 10.41 9.06 -89.70 -0.81 9.60 15 24 H 0.35 12.52 8.05 -89.69 -0.72 11.79 15 25 H 0.19 6.75 7.48 -2.91 -0.02 6.73 15 26 H 0.19 2.14 8.06 -2.91 -0.02 2.12 15 27 H 0.21 1.65 8.06 -2.91 -0.02 1.63 15 28 H 0.18 4.40 7.92 -2.91 -0.02 4.37 15 Total: -1.00 -73.13 251.30 2.68 -70.45 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -0.37 Total: 18.47 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: 4.55 Total: -6.06 kcal Atomic # 7 Polarization: -123.07 SS G_CDS: -4.05 Total: -127.13 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.78 Total: -3.18 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.79 Total: 47.44 kcal Total: -73.13 2.68 -70.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260720193.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.441 kcal (2) G-P(sol) polarization free energy of solvation -73.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds