Wall clock time and date at job start Mon Mar 30 2020 03:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99523 * 2 1 4 4 H 1.48497 * 109.47118 * 269.99947 * 3 2 1 5 5 H 1.48497 * 109.47249 * 30.00539 * 3 2 1 6 6 H 1.48507 * 109.46795 * 150.00251 * 3 2 1 7 7 C 1.37874 * 120.00322 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00022 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99771 * 0.02562 * 7 2 1 10 10 O 1.42909 * 110.30780 * 60.71672 * 9 7 2 11 11 C 1.54567 * 110.34367 * 298.54431 * 9 7 2 12 12 C 1.54523 * 101.98639 * 266.42766 * 11 9 7 13 13 C 1.51155 * 105.04536 * 334.66070 * 12 11 9 14 14 O 1.34141 * 143.58829 * 196.71477 * 13 12 11 15 15 N 1.20999 * 111.52760 * 180.02562 * 14 13 12 16 16 C 1.30306 * 111.56154 * 359.97438 * 15 14 13 17 17 C 1.50706 * 126.88964 * 179.97438 * 16 15 14 18 18 C 1.52999 * 117.49713 * 8.62339 * 17 16 15 19 19 C 1.53000 * 117.49829 * 300.00034 * 17 16 15 20 20 C 1.35034 * 110.12638 * 16.71400 * 13 12 11 21 21 H 0.97000 * 120.00006 * 359.97438 * 1 2 3 22 22 H 0.96696 * 113.99454 * 299.28353 * 10 9 7 23 23 H 1.09002 * 110.93254 * 24.61116 * 11 9 7 24 24 H 1.09003 * 110.93532 * 148.24721 * 11 9 7 25 25 H 1.09001 * 110.32181 * 93.53749 * 12 11 9 26 26 H 1.09002 * 110.32191 * 215.73378 * 12 11 9 27 27 H 1.08997 * 115.55270 * 154.32976 * 17 16 15 28 28 H 1.09003 * 117.50106 * 0.02562 * 18 17 16 29 29 H 1.08997 * 117.50139 * 145.01996 * 18 17 16 30 30 H 1.08998 * 117.50225 * 214.97502 * 19 17 16 31 31 H 1.08997 * 117.49869 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 8 0.4359 -2.6011 -1.1687 11 6 0.3823 -2.6179 1.2733 12 6 1.3187 -3.3893 2.2303 13 6 2.2522 -4.1624 1.3272 14 8 3.1251 -5.1804 1.2941 15 7 3.5925 -5.3287 0.1879 16 6 3.1141 -4.4576 -0.6549 17 6 3.4580 -4.3297 -2.1166 18 6 4.3138 -5.4341 -2.7402 19 6 4.9190 -4.0537 -2.4771 20 6 2.2110 -3.6581 0.0752 21 1 -0.4850 0.8400 0.0004 22 1 -0.2315 -1.9055 -1.2447 23 1 0.1415 -1.6331 1.6738 24 1 -0.5254 -3.1875 1.0735 25 1 1.8828 -2.6930 2.8508 26 1 0.7427 -4.0726 2.8544 27 1 2.6905 -3.8737 -2.7420 28 1 4.6279 -6.2533 -2.0934 29 1 4.1094 -5.7049 -3.7760 30 1 5.1128 -3.4164 -3.3399 31 1 5.6315 -3.9641 -1.6571 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260963328.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:32 Heat of formation + Delta-G solvation = 33.134702 kcal Electronic energy + Delta-G solvation = -16951.728710 eV Core-core repulsion = 14202.160054 eV Total energy + Delta-G solvation = -2749.568656 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.85415 -39.46405 -38.38407 -35.54773 -34.23662 -33.60149 -30.33536 -28.96125 -25.92712 -25.33965 -23.42943 -23.27141 -21.54820 -20.20107 -19.17827 -18.42602 -18.11352 -17.08540 -16.44882 -15.94424 -15.67939 -15.14671 -14.71825 -14.49452 -13.73139 -13.39643 -13.28948 -12.94179 -12.88261 -12.61754 -12.53240 -12.37771 -12.35986 -12.12189 -11.97602 -11.44384 -11.29496 -10.64873 -10.51210 -10.29511 -9.76954 -8.23145 -6.40454 0.52047 1.27533 1.40315 1.44525 1.52593 1.72816 2.38799 2.89301 3.00979 3.17313 3.59222 3.78851 3.91614 4.05142 4.10056 4.13853 4.33674 4.58480 4.64600 4.66784 4.78426 4.90373 4.99730 5.08897 5.13469 5.16561 5.21115 5.42231 5.55828 5.77669 6.10895 6.62447 7.28952 7.30874 7.43094 8.80297 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.023939 B = 0.010282 C = 0.008533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.338386 B = 2722.593686 C = 3280.723881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.041 3.959 3 Si 0.955 3.045 4 H -0.279 1.279 5 H -0.273 1.273 6 H -0.277 1.277 7 C -0.547 4.547 8 H 0.039 0.961 9 C 0.308 3.692 10 O -0.598 6.598 11 C -0.121 4.121 12 C -0.007 4.007 13 C -0.069 4.069 14 O 0.102 5.898 15 N -0.388 5.388 16 C 0.066 3.934 17 C -0.107 4.107 18 C -0.145 4.145 19 C -0.153 4.153 20 C -0.203 4.203 21 H 0.274 0.726 22 H 0.379 0.621 23 H 0.091 0.909 24 H 0.059 0.941 25 H 0.102 0.898 26 H 0.112 0.888 27 H 0.116 0.884 28 H 0.093 0.907 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.003 -4.576 0.445 5.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.161 4.161 3 Si 0.781 3.219 4 H -0.205 1.205 5 H -0.198 1.198 6 H -0.202 1.202 7 C -0.585 4.585 8 H 0.057 0.943 9 C 0.268 3.732 10 O -0.407 6.407 11 C -0.159 4.159 12 C -0.045 4.045 13 C -0.133 4.133 14 O 0.039 5.961 15 N -0.096 5.096 16 C -0.091 4.091 17 C -0.126 4.126 18 C -0.182 4.182 19 C -0.191 4.191 20 C -0.207 4.207 21 H 0.084 0.916 22 H 0.229 0.771 23 H 0.109 0.891 24 H 0.078 0.922 25 H 0.120 0.880 26 H 0.130 0.870 27 H 0.134 0.866 28 H 0.112 0.888 29 H 0.146 0.854 30 H 0.141 0.859 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.089 -5.992 0.283 7.259 hybrid contribution -0.410 2.060 -0.123 2.104 sum 3.679 -3.931 0.159 5.386 Atomic orbital electron populations 1.69715 1.06373 1.28544 1.49680 1.25517 0.95814 1.01552 0.93171 0.85611 0.78717 0.79430 0.78190 1.20488 1.19759 1.20183 1.21557 0.92799 0.91376 1.52790 0.94276 1.17628 0.84906 0.87439 0.83233 1.86156 1.52016 1.55388 1.47132 1.22974 0.96545 1.00488 0.95878 1.20807 0.92729 0.95540 0.95403 1.25637 0.96622 0.90746 1.00281 1.84526 1.44315 1.41497 1.25719 1.73816 1.21178 1.23266 0.91311 1.22191 0.96243 0.93366 0.97268 1.20278 0.96582 1.07799 0.87978 1.23067 1.00903 0.91672 1.02566 1.23044 0.92556 0.99929 1.03561 1.22052 1.02765 1.01202 0.94713 0.91633 0.77087 0.89098 0.92195 0.87982 0.87006 0.86564 0.88848 0.85446 0.85926 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.21 10.31 21.45 0.22 -44.98 16 2 C 0.04 2.06 5.03 84.65 0.43 2.48 16 3 Si 0.95 40.86 29.54 68.60 2.03 42.89 16 4 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 6 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.55 -29.07 8.28 25.60 0.21 -28.85 16 8 H 0.04 2.19 7.76 -2.91 -0.02 2.16 16 9 C 0.31 15.28 0.90 -11.76 -0.01 15.27 16 10 O -0.60 -31.26 13.04 -148.98 -1.94 -33.21 16 11 C -0.12 -5.16 5.94 31.65 0.19 -4.97 16 12 C -0.01 -0.24 6.78 30.51 0.21 -0.04 16 13 C -0.07 -2.87 8.39 25.09 0.21 -2.66 16 14 O 0.10 4.16 11.21 70.58 0.79 4.95 16 15 N -0.39 -16.38 11.74 -49.48 -0.58 -16.96 16 16 C 0.07 2.93 6.83 43.46 0.30 3.22 16 17 C -0.11 -4.08 6.30 -11.54 -0.07 -4.15 16 18 C -0.14 -4.19 10.15 30.59 0.31 -3.88 16 19 C -0.15 -4.72 10.23 30.60 0.31 -4.41 16 20 C -0.20 -9.64 6.03 -19.94 -0.12 -9.76 16 21 H 0.27 12.97 8.31 -92.71 -0.77 12.20 16 22 H 0.38 19.59 7.33 -74.06 -0.54 19.04 16 23 H 0.09 4.12 6.46 -2.39 -0.02 4.10 16 24 H 0.06 2.46 8.11 -2.39 -0.02 2.44 16 25 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 26 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 27 H 0.12 4.67 8.14 -2.39 -0.02 4.65 16 28 H 0.09 2.78 7.95 -2.39 -0.02 2.76 16 29 H 0.13 2.89 8.14 -2.39 -0.02 2.87 16 30 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 31 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -58.52 266.79 3.09 -55.43 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: 0.61 Total: 29.62 kcal Atomic # 6 Polarization: -39.70 SS G_CDS: 1.96 Total: -37.74 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: -0.36 Total: -61.94 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -1.15 Total: -28.26 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Total: -58.52 3.09 -55.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260963328.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.569 kcal (2) G-P(sol) polarization free energy of solvation -58.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds