Wall clock time and date at job start Mon Mar 30 2020 03:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00460 * 2 1 4 4 H 1.48506 * 109.47184 * 240.00550 * 3 2 1 5 5 H 1.48501 * 109.46925 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47328 * 119.99820 * 3 2 1 7 7 C 1.37885 * 119.99656 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99657 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99809 * 359.97438 * 7 2 1 10 10 O 1.42896 * 109.84086 * 29.44662 * 9 7 2 11 11 C 1.50772 * 109.84816 * 150.37937 * 9 7 2 12 12 O 1.33222 * 129.23691 * 312.34922 * 11 9 7 13 13 N 1.21409 * 111.22123 * 180.33982 * 12 11 9 14 14 C 1.30630 * 111.69448 * 359.92458 * 13 12 11 15 15 C 1.35334 * 124.12155 * 132.52661 * 11 9 7 16 16 C 1.50030 * 126.04454 * 359.38604 * 15 11 9 17 17 C 1.53503 * 109.02146 * 17.83973 * 16 15 11 18 18 C 1.53163 * 109.18818 * 313.86212 * 17 16 15 19 19 C 1.52741 * 117.88497 * 209.98549 * 18 17 16 20 20 C 1.52767 * 117.83482 * 279.01921 * 18 17 16 21 21 H 0.96999 * 119.99393 * 0.02562 * 1 2 3 22 22 H 0.96693 * 114.00495 * 60.92944 * 10 9 7 23 23 H 1.08000 * 126.98863 * 179.91196 * 14 13 12 24 24 H 1.08996 * 109.53835 * 137.68594 * 16 15 11 25 25 H 1.09000 * 109.54367 * 257.95294 * 16 15 11 26 26 H 1.08995 * 109.49819 * 193.96084 * 17 16 15 27 27 H 1.09003 * 109.59077 * 73.81871 * 17 16 15 28 28 H 1.09003 * 117.50031 * 215.24799 * 19 18 17 29 29 H 1.08993 * 117.50627 * 0.30143 * 19 18 17 30 30 H 1.08997 * 117.50692 * 359.61533 * 20 18 17 31 31 H 1.09001 * 117.50257 * 144.66929 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 8 -0.0055 -2.3337 -0.6608 11 6 2.0622 -3.5589 -0.7020 12 8 2.6936 -3.4989 -1.8736 13 7 3.2446 -4.5498 -2.1302 14 6 3.0619 -5.4340 -1.1861 15 6 2.2747 -4.8017 -0.2105 16 6 1.7646 -5.3333 1.0965 17 6 0.6153 -4.4408 1.5852 18 6 1.0233 -2.9714 1.4427 19 6 0.4351 -1.9674 2.4321 20 6 1.9089 -2.3682 2.5316 21 1 -0.4849 0.8401 -0.0004 22 1 0.0690 -2.0648 -1.5866 23 1 3.4392 -6.4456 -1.1613 24 1 1.4019 -6.3519 0.9591 25 1 2.5693 -5.3274 1.8316 26 1 0.4040 -4.6602 2.6317 27 1 -0.2754 -4.6311 0.9863 28 1 0.2093 -0.9679 2.0605 29 1 -0.2432 -2.3503 3.1944 30 1 2.2000 -3.0148 3.3593 31 1 2.6525 -1.6324 2.2254 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260984168.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:32 Heat of formation + Delta-G solvation = 47.913275 kcal Electronic energy + Delta-G solvation = -17542.824255 eV Core-core repulsion = 14793.896445 eV Total energy + Delta-G solvation = -2748.927809 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.10996 -38.48080 -34.82064 -34.02845 -32.20014 -31.55938 -29.66790 -26.93745 -24.82931 -23.10265 -21.35436 -21.32519 -20.38403 -17.68317 -17.18082 -16.77072 -16.36355 -14.94747 -14.73943 -14.53677 -13.77398 -13.37470 -13.21198 -12.83774 -12.22432 -12.09929 -11.52978 -11.16395 -11.08605 -10.90846 -10.61051 -10.51453 -10.35822 -10.04338 -9.66846 -9.51872 -9.11693 -8.82142 -8.63836 -8.45862 -8.23495 -6.05114 -4.30637 2.31323 2.94413 3.24340 3.29633 3.33574 3.96220 4.29819 4.80026 4.94943 5.05843 5.32712 5.45855 5.65578 5.67064 5.79268 5.94974 6.08388 6.17953 6.28047 6.38787 6.42390 6.50258 6.61786 6.71743 6.85692 6.94157 7.18889 7.35940 7.56857 7.74704 7.92542 8.60644 9.00461 9.22142 9.42642 10.87095 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.026469 B = 0.012374 C = 0.009962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.600072 B = 2262.190099 C = 2810.015274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.086 3.914 3 Si 0.885 3.115 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.562 4.562 8 H 0.061 0.939 9 C 0.363 3.637 10 O -0.517 6.517 11 C 0.001 3.999 12 O 0.102 5.898 13 N -0.396 5.396 14 C -0.013 4.013 15 C -0.235 4.235 16 C -0.031 4.031 17 C -0.084 4.084 18 C -0.098 4.098 19 C -0.148 4.148 20 C -0.167 4.167 21 H 0.261 0.739 22 H 0.361 0.639 23 H 0.179 0.821 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.125 0.875 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.220 -6.266 3.111 7.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.122 4.122 3 Si 0.712 3.288 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.600 4.600 8 H 0.079 0.921 9 C 0.321 3.679 10 O -0.319 6.319 11 C -0.064 4.064 12 O 0.042 5.958 13 N -0.103 5.103 14 C -0.191 4.191 15 C -0.239 4.239 16 C -0.068 4.068 17 C -0.121 4.121 18 C -0.099 4.099 19 C -0.185 4.185 20 C -0.204 4.204 21 H 0.071 0.929 22 H 0.206 0.794 23 H 0.196 0.804 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.143 0.857 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.446 -6.310 2.517 6.945 hybrid contribution 0.604 0.610 0.141 0.870 sum 2.050 -5.700 2.658 6.615 Atomic orbital electron populations 1.70202 1.05275 1.26243 1.45481 1.24963 0.94829 0.98674 0.93686 0.86772 0.79918 0.83095 0.79039 1.19971 1.21053 1.19971 1.21274 0.93349 0.89702 1.55663 0.92071 1.16834 0.79858 0.86641 0.84587 1.86477 1.27928 1.89949 1.27563 1.26533 0.95759 0.98476 0.85666 1.84712 1.48803 1.28836 1.33472 1.74143 1.17850 0.94009 1.24310 1.24508 1.01431 1.00978 0.92175 1.20825 1.07153 0.95024 1.00930 1.19707 0.97747 0.97946 0.91439 1.21226 0.97348 0.93483 1.00067 1.21193 1.05394 0.91743 0.91587 1.22928 0.94042 1.02270 0.99251 1.22925 0.95350 1.03482 0.98595 0.92895 0.79442 0.80382 0.91642 0.91357 0.92266 0.91421 0.85743 0.91523 0.91222 0.87720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.54 10.05 55.43 0.56 -20.99 16 2 C 0.09 2.15 4.52 -17.82 -0.08 2.07 16 3 Si 0.89 19.84 29.54 -169.99 -5.02 14.82 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.56 -14.18 5.94 -34.44 -0.20 -14.38 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.36 8.53 0.87 -92.61 -0.08 8.45 16 10 O -0.52 -12.71 10.70 -35.23 -0.38 -13.09 16 11 C 0.00 0.03 6.27 -35.31 -0.22 -0.19 16 12 O 0.10 2.33 11.20 19.12 0.21 2.54 16 13 N -0.40 -8.32 12.10 30.44 0.37 -7.95 16 14 C -0.01 -0.25 12.18 -17.25 -0.21 -0.46 16 15 C -0.23 -4.59 6.03 -105.17 -0.63 -5.22 16 16 C -0.03 -0.51 6.29 -27.95 -0.18 -0.68 16 17 C -0.08 -1.51 5.67 -26.39 -0.15 -1.66 16 18 C -0.10 -2.08 1.58 -154.39 -0.24 -2.33 16 19 C -0.15 -3.13 9.64 -26.84 -0.26 -3.39 16 20 C -0.17 -3.34 9.51 -26.82 -0.26 -3.59 16 21 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 22 H 0.36 8.48 9.04 45.56 0.41 8.89 16 23 H 0.18 2.52 8.06 -52.49 -0.42 2.09 16 24 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.06 0.93 8.11 -51.93 -0.42 0.51 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.12 3.00 5.49 -51.93 -0.29 2.72 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.10 2.28 6.72 -51.93 -0.35 1.93 16 LS Contribution 257.65 15.07 3.88 3.88 Total: -1.00 -27.01 257.65 -5.61 -32.63 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -2.72 Total: 9.53 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: -2.51 Total: -21.38 kcal Atomic # 7 Polarization: -29.86 SS G_CDS: 0.93 Total: -28.94 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -0.16 Total: -10.54 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -27.01 -5.61 -32.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260984168.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.539 kcal (2) G-P(sol) polarization free energy of solvation -27.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds