Wall clock time and date at job start Mon Mar 30 2020 03:04:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86794 * 120.00460 * 2 1
4 4 H 1.48506 * 109.47184 * 240.00550 * 3 2 1
5 5 H 1.48501 * 109.46925 * 0.02562 * 3 2 1
6 6 H 1.48494 * 109.47328 * 119.99820 * 3 2 1
7 7 C 1.37885 * 119.99656 * 180.02562 * 2 1 3
8 8 H 1.07997 * 119.99657 * 180.02562 * 7 2 1
9 9 C 1.50701 * 119.99809 * 359.97438 * 7 2 1
10 10 O 1.42896 * 109.84086 * 29.44662 * 9 7 2
11 11 C 1.50772 * 109.84816 * 150.37937 * 9 7 2
12 12 O 1.33222 * 129.23691 * 312.34922 * 11 9 7
13 13 N 1.21409 * 111.22123 * 180.33982 * 12 11 9
14 14 C 1.30630 * 111.69448 * 359.92458 * 13 12 11
15 15 C 1.35334 * 124.12155 * 132.52661 * 11 9 7
16 16 C 1.50030 * 126.04454 * 359.38604 * 15 11 9
17 17 C 1.53503 * 109.02146 * 17.83973 * 16 15 11
18 18 C 1.53163 * 109.18818 * 313.86212 * 17 16 15
19 19 C 1.52741 * 117.88497 * 209.98549 * 18 17 16
20 20 C 1.52767 * 117.83482 * 279.01921 * 18 17 16
21 21 H 0.96999 * 119.99393 * 0.02562 * 1 2 3
22 22 H 0.96693 * 114.00495 * 60.92944 * 10 9 7
23 23 H 1.08000 * 126.98863 * 179.91196 * 14 13 12
24 24 H 1.08996 * 109.53835 * 137.68594 * 16 15 11
25 25 H 1.09000 * 109.54367 * 257.95294 * 16 15 11
26 26 H 1.08995 * 109.49819 * 193.96084 * 17 16 15
27 27 H 1.09003 * 109.59077 * 73.81871 * 17 16 15
28 28 H 1.09003 * 117.50031 * 215.24799 * 19 18 17
29 29 H 1.08993 * 117.50627 * 0.30143 * 19 18 17
30 30 H 1.08997 * 117.50692 * 359.61533 * 20 18 17
31 31 H 1.09001 * 117.50257 * 144.66929 * 20 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2493 1.6176 0.0000
4 1 3.1030 1.6963 -1.2126
5 1 1.2843 2.7464 0.0006
6 1 3.1030 1.6963 1.2125
7 6 2.0045 -1.1942 -0.0005
8 1 3.0845 -1.1942 -0.0001
9 6 1.2509 -2.4992 -0.0005
10 8 -0.0055 -2.3337 -0.6608
11 6 2.0622 -3.5589 -0.7020
12 8 2.6936 -3.4989 -1.8736
13 7 3.2446 -4.5498 -2.1302
14 6 3.0619 -5.4340 -1.1861
15 6 2.2747 -4.8017 -0.2105
16 6 1.7646 -5.3333 1.0965
17 6 0.6153 -4.4408 1.5852
18 6 1.0233 -2.9714 1.4427
19 6 0.4351 -1.9674 2.4321
20 6 1.9089 -2.3682 2.5316
21 1 -0.4849 0.8401 -0.0004
22 1 0.0690 -2.0648 -1.5866
23 1 3.4392 -6.4456 -1.1613
24 1 1.4019 -6.3519 0.9591
25 1 2.5693 -5.3274 1.8316
26 1 0.4040 -4.6602 2.6317
27 1 -0.2754 -4.6311 0.9863
28 1 0.2093 -0.9679 2.0605
29 1 -0.2432 -2.3503 3.1944
30 1 2.2000 -3.0148 3.3593
31 1 2.6525 -1.6324 2.2254
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260984168.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:04:32
Heat of formation + Delta-G solvation = 47.913275 kcal
Electronic energy + Delta-G solvation = -17542.824255 eV
Core-core repulsion = 14793.896445 eV
Total energy + Delta-G solvation = -2748.927809 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 235.100 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-44.10996 -38.48080 -34.82064 -34.02845 -32.20014 -31.55938 -29.66790 -26.93745
-24.82931 -23.10265 -21.35436 -21.32519 -20.38403 -17.68317 -17.18082 -16.77072
-16.36355 -14.94747 -14.73943 -14.53677 -13.77398 -13.37470 -13.21198 -12.83774
-12.22432 -12.09929 -11.52978 -11.16395 -11.08605 -10.90846 -10.61051 -10.51453
-10.35822 -10.04338 -9.66846 -9.51872 -9.11693 -8.82142 -8.63836 -8.45862
-8.23495 -6.05114 -4.30637 2.31323 2.94413 3.24340 3.29633 3.33574
3.96220 4.29819 4.80026 4.94943 5.05843 5.32712 5.45855 5.65578
5.67064 5.79268 5.94974 6.08388 6.17953 6.28047 6.38787 6.42390
6.50258 6.61786 6.71743 6.85692 6.94157 7.18889 7.35940 7.56857
7.74704 7.92542 8.60644 9.00461 9.22142 9.42642 10.87095
Molecular weight = 235.10amu
Principal moments of inertia in cm(-1)
A = 0.026469 B = 0.012374 C = 0.009962
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1057.600072 B = 2262.190099 C = 2810.015274
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.838 5.838
2 C 0.086 3.914
3 Si 0.885 3.115
4 H -0.274 1.274
5 H -0.285 1.285
6 H -0.274 1.274
7 C -0.562 4.562
8 H 0.061 0.939
9 C 0.363 3.637
10 O -0.517 6.517
11 C 0.001 3.999
12 O 0.102 5.898
13 N -0.396 5.396
14 C -0.013 4.013
15 C -0.235 4.235
16 C -0.031 4.031
17 C -0.084 4.084
18 C -0.098 4.098
19 C -0.148 4.148
20 C -0.167 4.167
21 H 0.261 0.739
22 H 0.361 0.639
23 H 0.179 0.821
24 H 0.065 0.935
25 H 0.068 0.932
26 H 0.059 0.941
27 H 0.067 0.933
28 H 0.125 0.875
29 H 0.066 0.934
30 H 0.069 0.931
31 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.220 -6.266 3.111 7.101
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.472 5.472
2 C -0.122 4.122
3 Si 0.712 3.288
4 H -0.200 1.200
5 H -0.211 1.211
6 H -0.200 1.200
7 C -0.600 4.600
8 H 0.079 0.921
9 C 0.321 3.679
10 O -0.319 6.319
11 C -0.064 4.064
12 O 0.042 5.958
13 N -0.103 5.103
14 C -0.191 4.191
15 C -0.239 4.239
16 C -0.068 4.068
17 C -0.121 4.121
18 C -0.099 4.099
19 C -0.185 4.185
20 C -0.204 4.204
21 H 0.071 0.929
22 H 0.206 0.794
23 H 0.196 0.804
24 H 0.084 0.916
25 H 0.086 0.914
26 H 0.077 0.923
27 H 0.086 0.914
28 H 0.143 0.857
29 H 0.085 0.915
30 H 0.088 0.912
31 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges 1.446 -6.310 2.517 6.945
hybrid contribution 0.604 0.610 0.141 0.870
sum 2.050 -5.700 2.658 6.615
Atomic orbital electron populations
1.70202 1.05275 1.26243 1.45481 1.24963 0.94829 0.98674 0.93686
0.86772 0.79918 0.83095 0.79039 1.19971 1.21053 1.19971 1.21274
0.93349 0.89702 1.55663 0.92071 1.16834 0.79858 0.86641 0.84587
1.86477 1.27928 1.89949 1.27563 1.26533 0.95759 0.98476 0.85666
1.84712 1.48803 1.28836 1.33472 1.74143 1.17850 0.94009 1.24310
1.24508 1.01431 1.00978 0.92175 1.20825 1.07153 0.95024 1.00930
1.19707 0.97747 0.97946 0.91439 1.21226 0.97348 0.93483 1.00067
1.21193 1.05394 0.91743 0.91587 1.22928 0.94042 1.02270 0.99251
1.22925 0.95350 1.03482 0.98595 0.92895 0.79442 0.80382 0.91642
0.91357 0.92266 0.91421 0.85743 0.91523 0.91222 0.87720
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.84 -21.54 10.05 55.43 0.56 -20.99 16
2 C 0.09 2.15 4.52 -17.82 -0.08 2.07 16
3 Si 0.89 19.84 29.54 -169.99 -5.02 14.82 16
4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16
5 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16
6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16
7 C -0.56 -14.18 5.94 -34.44 -0.20 -14.38 16
8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16
9 C 0.36 8.53 0.87 -92.61 -0.08 8.45 16
10 O -0.52 -12.71 10.70 -35.23 -0.38 -13.09 16
11 C 0.00 0.03 6.27 -35.31 -0.22 -0.19 16
12 O 0.10 2.33 11.20 19.12 0.21 2.54 16
13 N -0.40 -8.32 12.10 30.44 0.37 -7.95 16
14 C -0.01 -0.25 12.18 -17.25 -0.21 -0.46 16
15 C -0.23 -4.59 6.03 -105.17 -0.63 -5.22 16
16 C -0.03 -0.51 6.29 -27.95 -0.18 -0.68 16
17 C -0.08 -1.51 5.67 -26.39 -0.15 -1.66 16
18 C -0.10 -2.08 1.58 -154.39 -0.24 -2.33 16
19 C -0.15 -3.13 9.64 -26.84 -0.26 -3.39 16
20 C -0.17 -3.34 9.51 -26.82 -0.26 -3.59 16
21 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16
22 H 0.36 8.48 9.04 45.56 0.41 8.89 16
23 H 0.18 2.52 8.06 -52.49 -0.42 2.09 16
24 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
25 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16
26 H 0.06 0.93 8.11 -51.93 -0.42 0.51 16
27 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16
28 H 0.12 3.00 5.49 -51.93 -0.29 2.72 16
29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16
30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16
31 H 0.10 2.28 6.72 -51.93 -0.35 1.93 16
LS Contribution 257.65 15.07 3.88 3.88
Total: -1.00 -27.01 257.65 -5.61 -32.63
By element:
Atomic # 1 Polarization: 12.26 SS G_CDS: -2.72 Total: 9.53 kcal
Atomic # 6 Polarization: -18.86 SS G_CDS: -2.51 Total: -21.38 kcal
Atomic # 7 Polarization: -29.86 SS G_CDS: 0.93 Total: -28.94 kcal
Atomic # 8 Polarization: -10.38 SS G_CDS: -0.16 Total: -10.54 kcal
Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal
Total LS contribution 3.88 Total: 3.88 kcal
Total: -27.01 -5.61 -32.63 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260984168.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 80.539 kcal
(2) G-P(sol) polarization free energy of solvation -27.010 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.528 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.615 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.625 kcal
(6) G-S(sol) free energy of system = (1) + (5) 47.913 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds