Wall clock time and date at job start Mon Mar 30 2020 03:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99945 * 2 1 4 4 H 1.48503 * 109.46890 * 240.00218 * 3 2 1 5 5 H 1.48502 * 109.47133 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47032 * 120.00247 * 3 2 1 7 7 C 1.37868 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00386 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00204 * 0.02562 * 7 2 1 10 10 O 1.42904 * 109.83103 * 330.68851 * 9 7 2 11 11 C 1.50768 * 109.84213 * 209.78811 * 9 7 2 12 12 O 1.33237 * 129.21697 * 47.90446 * 11 9 7 13 13 N 1.21407 * 111.22601 * 179.55680 * 12 11 9 14 14 C 1.30614 * 111.68708 * 0.10471 * 13 12 11 15 15 C 1.35330 * 124.14867 * 227.63723 * 11 9 7 16 16 C 1.50028 * 126.02119 * 0.62617 * 15 11 9 17 17 C 1.53475 * 109.01995 * 342.03725 * 16 15 11 18 18 C 1.53175 * 109.25662 * 46.17516 * 17 16 15 19 19 C 1.52731 * 117.88391 * 81.49153 * 18 17 16 20 20 C 1.52774 * 117.77379 * 150.49822 * 18 17 16 21 21 H 0.97002 * 120.00029 * 359.97438 * 1 2 3 22 22 H 0.96703 * 113.99403 * 299.10452 * 10 9 7 23 23 H 1.07997 * 126.98968 * 180.02562 * 14 13 12 24 24 H 1.09001 * 109.54629 * 101.90576 * 16 15 11 25 25 H 1.08996 * 109.54435 * 222.18047 * 16 15 11 26 26 H 1.09000 * 109.50986 * 286.23366 * 17 16 15 27 27 H 1.09001 * 109.53823 * 166.13206 * 17 16 15 28 28 H 1.08993 * 117.50499 * 215.17895 * 19 18 17 29 29 H 1.09001 * 117.50511 * 0.22400 * 19 18 17 30 30 H 1.08998 * 117.50987 * 359.59066 * 20 18 17 31 31 H 1.09005 * 117.50449 * 144.61614 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 -0.0068 -2.3327 0.6581 11 6 2.0608 -3.5575 0.7056 12 8 2.6854 -3.4966 1.8810 13 7 3.2358 -4.5470 2.1411 14 6 3.0598 -5.4312 1.1960 15 6 2.2777 -4.8001 0.2155 16 6 1.7746 -5.3324 -1.0938 17 6 0.6245 -4.4436 -1.5863 18 6 1.0258 -2.9723 -1.4426 19 6 1.9026 -2.3612 -2.5337 20 6 0.4264 -1.9713 -2.4288 21 1 -0.4850 0.8401 0.0004 22 1 0.0661 -2.0621 1.5836 23 1 3.4390 -6.4421 1.1732 24 1 2.5822 -5.3229 -1.8258 25 1 1.4150 -6.3524 -0.9587 26 1 -0.2668 -4.6377 -0.9897 27 1 0.4164 -4.6635 -2.6334 28 1 2.6418 -1.6204 -2.2294 29 1 2.1955 -3.0047 -3.3633 30 1 -0.2518 -2.3582 -3.1893 31 1 0.1940 -0.9740 -2.0551 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260984169.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:34 Heat of formation + Delta-G solvation = 30.940013 kcal Electronic energy + Delta-G solvation = -17542.919044 eV Core-core repulsion = 14793.255219 eV Total energy + Delta-G solvation = -2749.663825 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.65983 -40.10613 -36.54814 -35.60408 -34.07406 -33.16563 -31.21057 -28.69857 -26.50216 -24.65788 -22.96532 -22.89695 -21.94700 -19.31360 -18.94674 -18.42152 -18.04073 -16.73470 -16.46405 -16.19816 -15.32023 -14.90915 -14.74602 -14.39753 -13.85933 -13.56942 -13.22285 -12.97687 -12.82677 -12.47609 -12.34429 -12.14337 -11.94508 -11.79858 -11.33901 -11.11018 -10.74121 -10.62815 -10.33188 -10.29428 -9.82434 -7.98615 -6.27781 0.68401 1.40930 1.43692 1.47377 1.50630 2.34911 2.41935 3.13534 3.19348 3.57176 3.88590 3.99415 4.03000 4.25313 4.29504 4.40712 4.63064 4.75780 4.86540 4.87075 5.02266 5.03921 5.06927 5.23092 5.41748 5.46225 5.54299 5.66111 5.73609 5.91010 6.08006 6.63591 7.29459 7.40183 7.49889 8.92300 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.026447 B = 0.012379 C = 0.009959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.472145 B = 2261.361164 C = 2810.896479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.054 3.946 3 Si 0.932 3.068 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.570 4.570 8 H 0.042 0.958 9 C 0.353 3.647 10 O -0.530 6.530 11 C -0.034 4.034 12 O 0.066 5.934 13 N -0.414 5.414 14 C 0.005 3.995 15 C -0.227 4.227 16 C -0.029 4.029 17 C -0.079 4.079 18 C -0.110 4.110 19 C -0.152 4.152 20 C -0.160 4.160 21 H 0.259 0.741 22 H 0.357 0.643 23 H 0.226 0.774 24 H 0.089 0.911 25 H 0.101 0.899 26 H 0.053 0.947 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.092 0.908 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.788 -8.437 -4.535 9.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.151 4.151 3 Si 0.758 3.242 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.608 4.608 8 H 0.060 0.940 9 C 0.311 3.689 10 O -0.332 6.332 11 C -0.099 4.099 12 O 0.010 5.990 13 N -0.127 5.127 14 C -0.172 4.172 15 C -0.231 4.231 16 C -0.066 4.066 17 C -0.117 4.117 18 C -0.111 4.111 19 C -0.189 4.189 20 C -0.197 4.197 21 H 0.069 0.931 22 H 0.201 0.799 23 H 0.243 0.757 24 H 0.107 0.893 25 H 0.120 0.880 26 H 0.072 0.928 27 H 0.109 0.891 28 H 0.097 0.903 29 H 0.125 0.875 30 H 0.110 0.890 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.997 -8.450 -3.949 9.539 hybrid contribution 0.471 1.242 0.325 1.367 sum 2.468 -7.208 -3.624 8.437 Atomic orbital electron populations 1.70288 1.06028 1.26475 1.46266 1.25401 0.95386 1.00685 0.93609 0.86041 0.78926 0.80612 0.78614 1.19735 1.20605 1.20549 1.21360 0.92524 0.91318 1.55602 0.93989 1.16950 0.79297 0.86548 0.86136 1.86458 1.29216 1.89970 1.27541 1.26435 0.97361 0.99731 0.86390 1.84680 1.50243 1.30099 1.33968 1.74129 1.18596 0.94257 1.25669 1.25231 0.99550 1.02114 0.90354 1.21336 1.06013 0.93739 1.02000 1.19880 0.97752 0.99109 0.89867 1.21222 0.97386 0.91216 1.01849 1.21305 1.05990 0.93770 0.89996 1.22880 0.93988 1.03029 0.99018 1.22867 0.95425 1.01062 1.00337 0.93134 0.79874 0.75734 0.89303 0.88046 0.92819 0.89149 0.90294 0.87506 0.89009 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -45.27 10.01 21.44 0.21 -45.06 16 2 C 0.05 2.80 4.54 84.65 0.38 3.19 16 3 Si 0.93 41.69 29.54 68.60 2.03 43.72 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 7 C -0.57 -29.63 5.94 25.60 0.15 -29.48 16 8 H 0.04 2.28 7.81 -2.91 -0.02 2.26 16 9 C 0.35 16.78 0.87 -12.09 -0.01 16.76 16 10 O -0.53 -26.86 10.69 -148.98 -1.59 -28.45 16 11 C -0.03 -1.52 6.27 25.04 0.16 -1.36 16 12 O 0.07 3.05 11.20 78.31 0.88 3.93 16 13 N -0.41 -17.02 12.10 -58.30 -0.71 -17.72 16 14 C 0.01 0.18 12.18 85.40 1.04 1.22 16 15 C -0.23 -8.25 6.03 -20.22 -0.12 -8.38 16 16 C -0.03 -0.82 6.29 29.80 0.19 -0.63 16 17 C -0.08 -2.58 5.66 30.81 0.17 -2.41 16 18 C -0.11 -4.51 1.59 -52.11 -0.08 -4.59 16 19 C -0.15 -5.85 9.51 30.52 0.29 -5.56 16 20 C -0.16 -6.63 9.64 30.53 0.29 -6.34 16 21 H 0.26 13.27 8.31 -92.71 -0.77 12.50 16 22 H 0.36 17.73 9.04 -74.06 -0.67 17.07 16 23 H 0.23 5.14 8.06 -2.91 -0.02 5.12 16 24 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 25 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.09 2.39 8.11 -2.39 -0.02 2.37 16 28 H 0.08 3.43 6.72 -2.39 -0.02 3.42 16 29 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 30 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 31 H 0.09 4.43 5.50 -2.38 -0.01 4.41 16 Total: -1.00 -59.82 257.62 3.77 -56.04 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 0.49 Total: 25.10 kcal Atomic # 6 Polarization: -40.03 SS G_CDS: 2.46 Total: -37.57 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: -0.49 Total: -62.78 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.72 Total: -24.52 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -59.82 3.77 -56.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260984169.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.984 kcal (2) G-P(sol) polarization free energy of solvation -59.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds