Wall clock time and date at job start Mon Mar 30 2020 03:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38289 * 119.98611 * 2 1 4 4 C 1.38206 * 120.14378 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.92930 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.46613 * 20.00306 * 5 4 3 7 7 N 1.46906 * 109.46982 * 140.00093 * 5 4 3 8 8 C 1.50698 * 109.47576 * 260.00339 * 5 4 3 9 9 H 1.08004 * 119.99528 * 359.97438 * 8 5 4 10 10 C 1.37876 * 120.00356 * 180.02562 * 8 5 4 11 11 N 1.31512 * 120.00020 * 179.97438 * 10 8 5 12 12 Si 1.86803 * 119.99603 * 359.97438 * 10 8 5 13 13 H 1.48495 * 109.47195 * 90.00782 * 12 10 8 14 14 H 1.48502 * 109.46875 * 210.00223 * 12 10 8 15 15 H 1.48493 * 109.47388 * 330.00132 * 12 10 8 16 16 C 1.38282 * 120.14256 * 0.25065 * 4 3 2 17 17 C 1.38508 * 120.02879 * 359.47419 * 16 4 3 18 18 C 1.38501 * 119.98767 * 180.02562 * 2 1 3 19 19 O 1.36506 * 131.53978 * 0.04450 * 18 2 1 20 20 C 1.43989 * 105.48709 * 162.67971 * 19 18 2 21 21 O 1.36504 * 131.53479 * 180.13137 * 17 16 4 22 22 H 1.08998 * 109.46914 * 89.99588 * 1 2 3 23 23 H 1.08994 * 109.47311 * 210.00145 * 1 2 3 24 24 H 1.09005 * 109.47007 * 330.00246 * 1 2 3 25 25 H 1.07995 * 119.92365 * 0.02562 * 3 2 1 26 26 H 1.00896 * 111.00309 * 60.00059 * 7 5 4 27 27 H 1.00902 * 110.99923 * 183.96223 * 7 5 4 28 28 H 0.97000 * 119.99684 * 179.97438 * 11 10 8 29 29 H 1.08004 * 119.98573 * 179.70767 * 16 4 3 30 30 H 1.08996 * 110.56873 * 268.55805 * 20 19 18 31 31 H 1.09002 * 110.69159 * 145.74976 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1978 0.0000 4 6 3.5802 1.2016 -0.0005 5 6 4.3284 2.5097 -0.0011 6 1 3.6707 3.3046 0.3505 7 7 5.4929 2.4080 0.8887 8 6 4.7915 2.8230 -1.4006 9 1 4.5667 2.1427 -2.2087 10 6 5.5029 3.9776 -1.6491 11 7 5.9073 4.2507 -2.8703 12 14 5.8922 5.1539 -0.2511 13 1 7.1920 4.7808 0.3623 14 1 5.9734 6.5397 -0.7784 15 1 4.8206 5.0764 0.7740 16 6 4.2778 0.0077 -0.0063 17 6 3.5922 -1.1958 -0.0006 18 6 2.1992 -1.1996 -0.0005 19 8 1.7667 -2.4943 -0.0019 20 6 2.9016 -3.2784 -0.4149 21 8 4.0321 -2.4881 -0.0018 22 1 -0.3633 0.0001 -1.0277 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3633 0.8901 0.5138 25 1 1.6567 2.1322 0.0004 26 1 6.1184 1.6774 0.5838 27 1 5.9748 3.2920 0.9560 28 1 6.4075 5.0632 -3.0451 29 1 5.3579 0.0136 -0.0115 30 1 2.9019 -3.4113 -1.4967 31 1 2.9056 -4.2451 0.0887 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261027327.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:13 Heat of formation + Delta-G solvation = -35.295826 kcal Electronic energy + Delta-G solvation = -16433.886866 eV Core-core repulsion = 13681.350839 eV Total energy + Delta-G solvation = -2752.536027 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.77950 -38.08423 -36.02772 -34.85432 -32.19387 -31.30374 -29.45570 -26.53099 -26.31064 -25.37990 -23.01031 -21.94431 -19.88848 -17.48497 -17.35813 -17.13755 -16.61081 -15.91326 -15.04369 -14.29663 -14.20364 -13.97805 -13.41307 -13.21989 -12.98057 -12.65670 -12.53537 -12.41476 -12.06781 -11.77637 -11.62232 -11.02863 -10.86215 -10.56377 -10.23762 -10.07681 -9.61005 -8.82495 -8.11501 -7.79182 -7.36218 -6.27593 -4.32021 1.68998 1.73908 3.10307 3.11339 3.24890 3.25434 3.74894 4.13334 4.19139 4.84721 4.88451 5.00514 5.02633 5.28380 5.44704 5.61993 5.74157 5.75606 5.81740 5.97489 6.02237 6.08694 6.44518 6.63549 6.75333 6.82381 6.91670 7.24996 7.43079 7.58842 8.00963 8.22368 8.42841 8.79547 9.30693 10.84838 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.036306 B = 0.007170 C = 0.006696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.034005 B = 3904.159440 C = 4180.593267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.067 4.067 3 C -0.115 4.115 4 C -0.002 4.002 5 C 0.210 3.790 6 H 0.055 0.945 7 N -0.849 5.849 8 C -0.548 4.548 9 H 0.077 0.923 10 C 0.074 3.926 11 N -0.888 5.888 12 Si 0.873 3.127 13 H -0.274 1.274 14 H -0.290 1.290 15 H -0.258 1.258 16 C -0.090 4.090 17 C 0.030 3.970 18 C 0.001 3.999 19 O -0.315 6.315 20 C 0.214 3.786 21 O -0.314 6.314 22 H 0.068 0.932 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.134 0.866 26 H 0.332 0.668 27 H 0.319 0.681 28 H 0.267 0.733 29 H 0.131 0.869 30 H 0.076 0.924 31 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.865 -9.458 5.476 12.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.068 4.068 3 C -0.134 4.134 4 C -0.003 4.003 5 C 0.101 3.899 6 H 0.073 0.927 7 N -0.383 5.383 8 C -0.588 4.588 9 H 0.096 0.904 10 C -0.130 4.130 11 N -0.524 5.524 12 Si 0.701 3.299 13 H -0.201 1.201 14 H -0.217 1.217 15 H -0.183 1.183 16 C -0.109 4.109 17 C -0.014 4.014 18 C -0.042 4.042 19 O -0.232 6.232 20 C 0.102 3.898 21 O -0.230 6.230 22 H 0.087 0.913 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.152 0.848 26 H 0.144 0.856 27 H 0.135 0.865 28 H 0.077 0.923 29 H 0.149 0.851 30 H 0.094 0.906 31 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.305 -9.690 6.034 13.553 hybrid contribution 0.987 0.662 -0.483 1.283 sum -6.318 -9.029 5.551 12.339 Atomic orbital electron populations 1.20653 0.90805 1.02504 1.02245 1.18789 0.95936 0.88831 1.03237 1.20699 0.93722 0.96340 1.02619 1.19777 0.92879 0.94771 0.92906 1.18487 0.89602 0.89892 0.91958 0.92675 1.59727 1.12827 1.09755 1.55984 1.21614 1.35774 1.07784 0.93584 0.90449 1.25027 0.95110 0.97214 0.95632 1.69891 1.37071 1.25883 1.19602 0.87012 0.79589 0.80677 0.82610 1.20089 1.21674 1.18256 1.19848 1.00511 0.87383 1.03151 1.19749 0.91456 0.85317 1.04872 1.19396 0.91429 0.84946 1.08459 1.87252 1.35577 1.14877 1.85459 1.25454 0.71668 0.93118 0.99577 1.87312 1.35632 1.14967 1.85113 0.91317 0.91827 0.91314 0.84833 0.85556 0.86522 0.92293 0.85088 0.90612 0.85950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 10.01 36.00 0.36 -1.04 16 2 C -0.07 -1.15 5.89 -104.51 -0.62 -1.76 16 3 C -0.12 -2.13 9.31 -39.57 -0.37 -2.50 16 4 C 0.00 -0.05 4.89 -104.62 -0.51 -0.56 16 5 C 0.21 4.80 2.47 -70.02 -0.17 4.62 16 6 H 0.06 1.28 7.06 -51.93 -0.37 0.91 16 7 N -0.85 -18.27 8.98 -6.65 -0.06 -18.33 16 8 C -0.55 -14.69 9.28 -34.44 -0.32 -15.01 16 9 H 0.08 2.30 7.98 -52.48 -0.42 1.88 16 10 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 11 N -0.89 -26.06 13.96 55.43 0.77 -25.29 16 12 Si 0.87 20.30 24.61 -169.99 -4.18 16.11 16 13 H -0.27 -6.15 7.01 56.52 0.40 -5.75 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16 16 C -0.09 -1.80 9.30 -39.47 -0.37 -2.17 16 17 C 0.03 0.56 7.15 -39.08 -0.28 0.28 16 18 C 0.00 0.02 6.81 -39.09 -0.27 -0.24 16 19 O -0.31 -5.03 11.39 -45.71 -0.52 -5.55 16 20 C 0.21 2.80 8.89 101.05 0.90 3.69 16 21 O -0.31 -5.34 11.40 -45.70 -0.52 -5.86 16 22 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 23 H 0.06 0.80 8.08 -51.93 -0.42 0.39 16 24 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 25 H 0.13 2.23 8.03 -52.49 -0.42 1.81 16 26 H 0.33 6.81 7.34 -39.29 -0.29 6.52 16 27 H 0.32 6.94 4.30 -39.29 -0.17 6.78 16 28 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.13 2.56 6.67 -52.48 -0.35 2.21 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.12 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 260.75 15.07 3.93 3.93 Total: -1.00 -30.26 260.75 -5.62 -35.88 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -3.29 Total: 11.85 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -1.74 Total: -12.75 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: 0.71 Total: -43.62 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: -1.04 Total: -11.40 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.18 Total: 16.11 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.26 -5.62 -35.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261027327.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.584 kcal (2) G-P(sol) polarization free energy of solvation -30.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds