Wall clock time and date at job start Mon Mar 30 2020 03:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38289 * 119.98611 * 2 1 4 4 C 1.38206 * 120.14378 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.92930 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.46613 * 20.00306 * 5 4 3 7 7 N 1.46906 * 109.46982 * 140.00093 * 5 4 3 8 8 C 1.50698 * 109.47576 * 260.00339 * 5 4 3 9 9 H 1.08004 * 119.99528 * 359.97438 * 8 5 4 10 10 C 1.37876 * 120.00356 * 180.02562 * 8 5 4 11 11 N 1.31512 * 120.00020 * 179.97438 * 10 8 5 12 12 Si 1.86803 * 119.99603 * 359.97438 * 10 8 5 13 13 H 1.48495 * 109.47195 * 90.00782 * 12 10 8 14 14 H 1.48502 * 109.46875 * 210.00223 * 12 10 8 15 15 H 1.48493 * 109.47388 * 330.00132 * 12 10 8 16 16 C 1.38282 * 120.14256 * 0.25065 * 4 3 2 17 17 C 1.38508 * 120.02879 * 359.47419 * 16 4 3 18 18 C 1.38501 * 119.98767 * 180.02562 * 2 1 3 19 19 O 1.36506 * 131.53978 * 0.04450 * 18 2 1 20 20 C 1.43989 * 105.48709 * 162.67971 * 19 18 2 21 21 O 1.36504 * 131.53479 * 180.13137 * 17 16 4 22 22 H 1.08998 * 109.46914 * 89.99588 * 1 2 3 23 23 H 1.08994 * 109.47311 * 210.00145 * 1 2 3 24 24 H 1.09005 * 109.47007 * 330.00246 * 1 2 3 25 25 H 1.07995 * 119.92365 * 0.02562 * 3 2 1 26 26 H 1.00896 * 111.00309 * 60.00059 * 7 5 4 27 27 H 1.00902 * 110.99923 * 183.96223 * 7 5 4 28 28 H 0.97000 * 119.99684 * 179.97438 * 11 10 8 29 29 H 1.08004 * 119.98573 * 179.70767 * 16 4 3 30 30 H 1.08996 * 110.56873 * 268.55805 * 20 19 18 31 31 H 1.09002 * 110.69159 * 145.74976 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1978 0.0000 4 6 3.5802 1.2016 -0.0005 5 6 4.3284 2.5097 -0.0011 6 1 3.6707 3.3046 0.3505 7 7 5.4929 2.4080 0.8887 8 6 4.7915 2.8230 -1.4006 9 1 4.5667 2.1427 -2.2087 10 6 5.5029 3.9776 -1.6491 11 7 5.9073 4.2507 -2.8703 12 14 5.8922 5.1539 -0.2511 13 1 7.1920 4.7808 0.3623 14 1 5.9734 6.5397 -0.7784 15 1 4.8206 5.0764 0.7740 16 6 4.2778 0.0077 -0.0063 17 6 3.5922 -1.1958 -0.0006 18 6 2.1992 -1.1996 -0.0005 19 8 1.7667 -2.4943 -0.0019 20 6 2.9016 -3.2784 -0.4149 21 8 4.0321 -2.4881 -0.0018 22 1 -0.3633 0.0001 -1.0277 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3633 0.8901 0.5138 25 1 1.6567 2.1322 0.0004 26 1 6.1184 1.6774 0.5838 27 1 5.9748 3.2920 0.9560 28 1 6.4075 5.0632 -3.0451 29 1 5.3579 0.0136 -0.0115 30 1 2.9019 -3.4113 -1.4967 31 1 2.9056 -4.2451 0.0887 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261027327.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:13 Heat of formation + Delta-G solvation = -57.424874 kcal Electronic energy + Delta-G solvation = -16434.846453 eV Core-core repulsion = 13681.350839 eV Total energy + Delta-G solvation = -2753.495614 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.06761 -39.55106 -37.32980 -36.53500 -34.08574 -32.80101 -30.90022 -28.15371 -27.75828 -26.67365 -24.64808 -23.37485 -21.42526 -19.20952 -18.82748 -18.43209 -18.21558 -17.30708 -16.71435 -16.00462 -15.68623 -15.28182 -14.98928 -14.53213 -14.33782 -14.23095 -13.98180 -13.89091 -13.57595 -13.13230 -13.00837 -12.79750 -12.53104 -12.05373 -11.91699 -11.58013 -11.48557 -10.90798 -9.56630 -9.46844 -8.86956 -8.39022 -6.48508 0.24697 0.30973 1.27019 1.34994 1.44249 1.84080 2.22565 2.59265 2.67115 2.94330 3.52810 3.80311 3.86564 4.03489 4.17150 4.24956 4.31224 4.39530 4.55530 4.66522 4.81042 4.83148 5.05727 5.17149 5.29695 5.35799 5.43368 5.52474 5.74015 6.03942 6.22183 6.38021 6.54767 6.67391 7.18253 8.77000 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.036306 B = 0.007170 C = 0.006696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.034005 B = 3904.159440 C = 4180.593267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.066 4.066 3 C -0.120 4.120 4 C -0.029 4.029 5 C 0.218 3.782 6 H 0.057 0.943 7 N -0.840 5.840 8 C -0.549 4.549 9 H 0.032 0.968 10 C 0.019 3.981 11 N -0.938 5.938 12 Si 0.938 3.062 13 H -0.257 1.257 14 H -0.292 1.292 15 H -0.241 1.241 16 C -0.108 4.108 17 C 0.020 3.980 18 C 0.000 4.000 19 O -0.317 6.317 20 C 0.204 3.796 21 O -0.327 6.327 22 H 0.080 0.920 23 H 0.071 0.929 24 H 0.088 0.912 25 H 0.149 0.851 26 H 0.337 0.663 27 H 0.319 0.681 28 H 0.269 0.731 29 H 0.124 0.876 30 H 0.095 0.905 31 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.084 -10.107 7.052 14.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.067 4.067 3 C -0.139 4.139 4 C -0.030 4.030 5 C 0.108 3.892 6 H 0.075 0.925 7 N -0.373 5.373 8 C -0.588 4.588 9 H 0.050 0.950 10 C -0.181 4.181 11 N -0.577 5.577 12 Si 0.763 3.237 13 H -0.183 1.183 14 H -0.219 1.219 15 H -0.165 1.165 16 C -0.127 4.127 17 C -0.024 4.024 18 C -0.044 4.044 19 O -0.234 6.234 20 C 0.093 3.907 21 O -0.244 6.244 22 H 0.099 0.901 23 H 0.090 0.910 24 H 0.106 0.894 25 H 0.167 0.833 26 H 0.149 0.851 27 H 0.134 0.866 28 H 0.078 0.922 29 H 0.142 0.858 30 H 0.113 0.887 31 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -8.531 -10.374 7.623 15.444 hybrid contribution 1.317 0.676 -1.054 1.817 sum -7.214 -9.698 6.569 13.757 Atomic orbital electron populations 1.20732 0.87825 1.03935 1.03397 1.19175 0.98039 0.87977 1.01498 1.20918 0.92959 0.97778 1.02210 1.19687 0.93958 0.93962 0.95349 1.18308 0.90069 0.91329 0.89512 0.92541 1.59692 1.12674 1.09830 1.55107 1.21805 1.35545 1.06846 0.94629 0.95000 1.25892 0.94889 0.99089 0.98193 1.70045 1.38583 1.26858 1.22164 0.85952 0.80507 0.77753 0.79520 1.18282 1.21870 1.16476 1.19813 1.00348 0.88120 1.04422 1.19807 0.92116 0.85740 1.04761 1.19619 0.91110 0.86065 1.07586 1.87240 1.36639 1.13999 1.85489 1.26072 0.69569 0.93537 1.01501 1.87286 1.37459 1.14369 1.85292 0.90140 0.90967 0.89364 0.83285 0.85050 0.86559 0.92173 0.85785 0.88718 0.81639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.41 10.01 71.23 0.71 -1.70 16 2 C -0.07 -2.14 5.89 -19.79 -0.12 -2.25 16 3 C -0.12 -4.33 9.31 22.27 0.21 -4.12 16 4 C -0.03 -1.20 4.89 -19.86 -0.10 -1.29 16 5 C 0.22 9.93 2.47 43.42 0.11 10.04 16 6 H 0.06 2.56 7.06 -2.39 -0.02 2.54 16 7 N -0.84 -35.40 8.98 -174.95 -1.57 -36.97 16 8 C -0.55 -30.20 9.28 25.60 0.24 -29.97 16 9 H 0.03 1.99 7.98 -2.91 -0.02 1.97 16 10 C 0.02 1.05 5.47 84.65 0.46 1.51 16 11 N -0.94 -56.60 13.96 21.45 0.30 -56.30 16 12 Si 0.94 41.57 24.61 68.60 1.69 43.26 16 13 H -0.26 -10.67 7.01 99.48 0.70 -9.97 16 14 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 15 H -0.24 -9.97 6.54 99.48 0.65 -9.32 16 16 C -0.11 -4.38 9.30 22.34 0.21 -4.17 16 17 C 0.02 0.74 7.15 22.59 0.16 0.90 16 18 C 0.00 0.01 6.81 22.59 0.15 0.16 16 19 O -0.32 -9.31 11.39 -76.13 -0.87 -10.18 16 20 C 0.20 4.78 8.89 113.37 1.01 5.79 16 21 O -0.33 -10.72 11.40 -76.10 -0.87 -11.59 16 22 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.07 1.59 8.08 -2.39 -0.02 1.57 16 24 H 0.09 1.74 8.09 -2.38 -0.02 1.72 16 25 H 0.15 4.76 8.03 -2.91 -0.02 4.73 16 26 H 0.34 13.78 7.34 -89.70 -0.66 13.12 16 27 H 0.32 13.29 4.30 -89.69 -0.39 12.91 16 28 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 29 H 0.12 5.01 6.67 -2.91 -0.02 4.99 16 30 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.17 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -66.34 260.75 1.79 -64.55 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: 0.06 Total: 32.34 kcal Atomic # 6 Polarization: -28.16 SS G_CDS: 3.05 Total: -25.11 kcal Atomic # 7 Polarization: -92.01 SS G_CDS: -1.27 Total: -93.28 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -1.73 Total: -21.77 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 1.69 Total: 43.26 kcal Total: -66.34 1.79 -64.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261027327.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.129 kcal (2) G-P(sol) polarization free energy of solvation -66.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds