Wall clock time and date at job start Mon Mar 30 2020 03:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00190 * 2 1 4 4 H 1.48497 * 109.47167 * 269.99677 * 3 2 1 5 5 H 1.48500 * 109.47028 * 29.99825 * 3 2 1 6 6 H 1.48497 * 109.47377 * 149.99860 * 3 2 1 7 7 C 1.37877 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99852 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00129 * 180.02562 * 7 2 1 10 10 H 1.09002 * 109.46959 * 60.00169 * 9 7 2 11 11 N 1.46899 * 109.47244 * 300.00290 * 9 7 2 12 12 C 1.50703 * 109.47227 * 180.02562 * 9 7 2 13 13 C 1.38129 * 120.00480 * 99.99950 * 12 9 7 14 14 C 1.38250 * 120.03669 * 180.02562 * 13 12 9 15 15 C 1.38262 * 120.08235 * 0.04667 * 14 13 12 16 16 C 1.38210 * 120.10555 * 359.96567 * 15 14 13 17 17 C 1.38640 * 119.91896 * 359.68698 * 16 15 14 18 18 O 1.35976 * 120.53851 * 180.14065 * 17 16 15 19 19 C 1.43052 * 116.90388 * 343.75150 * 18 17 16 20 20 O 1.43254 * 108.61293 * 47.27478 * 19 18 17 21 21 C 1.43085 * 113.04079 * 294.54787 * 20 19 18 22 22 H 0.96999 * 119.99716 * 359.97438 * 1 2 3 23 23 H 1.00893 * 111.00096 * 176.04982 * 11 9 7 24 24 H 1.00903 * 110.99833 * 299.99603 * 11 9 7 25 25 H 1.07997 * 119.98474 * 359.97438 * 13 12 9 26 26 H 1.07999 * 119.96047 * 180.02562 * 14 13 12 27 27 H 1.07994 * 119.94430 * 179.97438 * 15 14 13 28 28 H 1.08999 * 109.61428 * 287.53479 * 19 18 17 29 29 H 1.09004 * 109.75939 * 167.09875 * 19 18 17 30 30 H 1.09003 * 109.50057 * 288.63937 * 21 20 19 31 31 H 1.09005 * 109.52741 * 168.55000 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8745 -0.6801 0.8912 11 7 4.0017 -0.5018 -1.1982 12 6 4.0138 -2.6149 0.0010 13 6 4.4403 -3.1967 -1.1770 14 6 4.9008 -4.5003 -1.1779 15 6 4.9344 -5.2243 -0.0005 16 6 4.5085 -4.6468 1.1808 17 6 4.0531 -3.3374 1.1855 18 8 3.6338 -2.7559 2.3410 19 6 3.3465 -3.6285 3.4376 20 8 4.4256 -4.5606 3.5751 21 6 4.5456 -5.4469 2.4582 22 1 -0.4850 0.8401 0.0004 23 1 5.0081 -0.4318 -1.1894 24 1 3.6785 -0.9596 -2.0374 25 1 4.4134 -2.6332 -2.0979 26 1 5.2344 -4.9538 -2.0996 27 1 5.2941 -6.2425 -0.0039 28 1 2.4196 -4.1679 3.2429 29 1 3.2459 -3.0474 4.3543 30 1 3.7188 -6.1572 2.4668 31 1 5.4902 -5.9873 2.5218 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261032834.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:50 Heat of formation + Delta-G solvation = -77.986400 kcal Electronic energy + Delta-G solvation = -16815.064527 eV Core-core repulsion = 14060.677299 eV Total energy + Delta-G solvation = -2754.387229 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.88211 -39.21659 -37.39980 -36.48971 -34.05597 -32.24961 -31.01359 -28.38945 -27.42741 -26.60642 -24.58825 -22.29355 -21.16070 -19.49429 -19.04526 -17.99482 -17.57781 -16.70985 -16.62488 -16.04440 -16.02708 -15.27738 -15.23795 -15.06511 -14.72104 -14.28237 -13.88476 -13.49753 -13.07221 -12.84718 -12.69221 -12.60444 -11.93257 -11.73258 -11.71031 -11.47537 -11.16877 -10.74771 -9.58418 -9.41165 -9.04824 -8.24513 -6.35467 0.32889 0.50629 1.48932 1.55735 1.69925 2.29018 2.52621 2.61848 2.86113 3.09903 3.62427 3.81499 3.86304 4.12958 4.13351 4.30959 4.36160 4.40855 4.47889 4.62462 4.75921 4.93619 5.11241 5.33505 5.35829 5.52008 5.64122 5.73649 5.93217 6.12173 6.39365 6.55874 6.74290 6.96642 7.39506 8.88931 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.028475 B = 0.009477 C = 0.007948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.095549 B = 2953.800975 C = 3522.193133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.026 3.974 3 Si 1.001 2.999 4 H -0.272 1.272 5 H -0.322 1.322 6 H -0.268 1.268 7 C -0.498 4.498 8 H 0.022 0.978 9 C 0.236 3.764 10 H 0.032 0.968 11 N -0.843 5.843 12 C -0.130 4.130 13 C -0.105 4.105 14 C -0.145 4.145 15 C -0.089 4.089 16 C -0.217 4.217 17 C 0.105 3.895 18 O -0.346 6.346 19 C 0.216 3.784 20 O -0.400 6.400 21 C 0.102 3.898 22 H 0.264 0.736 23 H 0.334 0.666 24 H 0.343 0.657 25 H 0.135 0.865 26 H 0.157 0.843 27 H 0.164 0.836 28 H 0.063 0.937 29 H 0.160 0.840 30 H 0.085 0.915 31 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.051 -11.519 1.637 16.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.172 4.172 3 Si 0.831 3.169 4 H -0.198 1.198 5 H -0.253 1.253 6 H -0.194 1.194 7 C -0.536 4.536 8 H 0.041 0.959 9 C 0.125 3.875 10 H 0.050 0.950 11 N -0.375 5.375 12 C -0.133 4.133 13 C -0.124 4.124 14 C -0.162 4.162 15 C -0.106 4.106 16 C -0.218 4.218 17 C 0.060 3.940 18 O -0.262 6.262 19 C 0.104 3.896 20 O -0.320 6.320 21 C 0.027 3.973 22 H 0.073 0.927 23 H 0.147 0.853 24 H 0.158 0.842 25 H 0.153 0.847 26 H 0.174 0.826 27 H 0.181 0.819 28 H 0.081 0.919 29 H 0.178 0.822 30 H 0.103 0.897 31 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 11.583 -10.610 2.102 15.848 hybrid contribution -0.097 -0.076 -0.265 0.292 sum 11.487 -10.686 1.838 15.796 Atomic orbital electron populations 1.70080 1.08364 1.28048 1.52395 1.25816 0.95218 1.03430 0.92776 0.84839 0.77206 0.76691 0.78172 1.19809 1.25267 1.19359 1.20797 0.89716 0.92274 1.50851 0.95922 1.18044 0.93318 0.85916 0.90173 0.95049 1.59016 1.14689 1.58245 1.05553 1.20658 1.01027 0.99821 0.91765 1.21072 0.98322 0.96492 0.96473 1.21354 1.01667 0.93716 0.99508 1.21052 0.98256 1.00894 0.90442 1.20678 1.07117 0.94607 0.99406 1.18714 0.96836 0.92543 0.85878 1.86311 1.81645 1.37898 1.20332 1.24679 0.88849 0.86164 0.89909 1.88189 1.53295 1.48149 1.42344 1.21772 1.05184 0.90116 0.80241 0.92729 0.85316 0.84221 0.84714 0.82587 0.81881 0.91932 0.82241 0.89667 0.84300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.01 13.96 21.45 0.30 -60.71 16 2 C 0.03 1.57 5.47 84.65 0.46 2.04 16 3 Si 1.00 51.14 26.03 68.60 1.79 52.92 16 4 H -0.27 -13.43 7.11 99.48 0.71 -12.72 16 5 H -0.32 -16.50 7.11 99.48 0.71 -15.80 16 6 H -0.27 -13.34 6.54 99.48 0.65 -12.69 16 7 C -0.50 -29.39 9.29 25.60 0.24 -29.15 16 8 H 0.02 1.50 7.98 -2.91 -0.02 1.47 16 9 C 0.24 11.45 1.99 43.42 0.09 11.54 16 10 H 0.03 1.68 6.89 -2.39 -0.02 1.66 16 11 N -0.84 -35.06 6.24 -174.95 -1.09 -36.16 16 12 C -0.13 -5.51 5.03 -19.75 -0.10 -5.61 16 13 C -0.11 -3.59 9.24 22.25 0.21 -3.38 16 14 C -0.14 -3.88 10.04 22.28 0.22 -3.65 16 15 C -0.09 -2.26 9.72 22.27 0.22 -2.04 16 16 C -0.22 -6.81 5.82 -19.75 -0.11 -6.92 16 17 C 0.11 4.30 6.53 22.50 0.15 4.44 16 18 O -0.35 -14.76 9.67 -70.44 -0.68 -15.44 16 19 C 0.22 6.87 7.95 113.37 0.90 7.77 16 20 O -0.40 -11.76 10.97 -126.15 -1.38 -13.14 16 21 C 0.10 2.50 6.87 71.26 0.49 2.99 16 22 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 23 H 0.33 11.65 9.06 -89.70 -0.81 10.84 16 24 H 0.34 13.35 7.28 -89.69 -0.65 12.69 16 25 H 0.14 4.12 6.24 -2.91 -0.02 4.10 16 26 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 27 H 0.16 2.67 8.06 -2.91 -0.02 2.64 16 28 H 0.06 1.89 8.12 -2.39 -0.02 1.87 16 29 H 0.16 4.12 8.14 -2.38 -0.02 4.10 16 30 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.14 2.45 8.14 -2.38 -0.02 2.43 16 Total: -1.00 -75.32 259.98 1.33 -73.98 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -0.35 Total: 20.51 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: 2.76 Total: -21.98 kcal Atomic # 7 Polarization: -96.07 SS G_CDS: -0.79 Total: -96.86 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -2.06 Total: -28.58 kcal Atomic # 14 Polarization: 51.14 SS G_CDS: 1.79 Total: 52.92 kcal Total: -75.32 1.33 -73.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261032834.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.002 kcal (2) G-P(sol) polarization free energy of solvation -75.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds