Wall clock time and date at job start Mon Mar 30 2020 03:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99846 * 2 1 4 4 H 1.48503 * 109.47052 * 270.00203 * 3 2 1 5 5 H 1.48495 * 109.47062 * 30.00029 * 3 2 1 6 6 H 1.48495 * 109.46859 * 150.00359 * 3 2 1 7 7 C 1.37875 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99926 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00151 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46799 * 299.99546 * 9 7 2 11 11 N 1.46900 * 109.47159 * 59.99490 * 9 7 2 12 12 C 1.50699 * 109.47114 * 179.97438 * 9 7 2 13 13 C 1.38129 * 120.00360 * 264.97516 * 12 9 7 14 14 C 1.38249 * 120.03151 * 180.02562 * 13 12 9 15 15 C 1.38262 * 120.08593 * 0.05309 * 14 13 12 16 16 C 1.38201 * 120.10392 * 0.02562 * 15 14 13 17 17 C 1.38632 * 119.92253 * 359.87866 * 16 15 14 18 18 O 1.35976 * 120.53579 * 180.45374 * 17 16 15 19 19 C 1.43085 * 116.82777 * 343.12998 * 18 17 16 20 20 O 1.43267 * 108.58290 * 47.59666 * 19 18 17 21 21 C 1.43073 * 113.03653 * 294.51987 * 20 19 18 22 22 H 0.97003 * 120.00237 * 359.97438 * 1 2 3 23 23 H 1.00899 * 110.99813 * 60.00498 * 11 9 7 24 24 H 1.00907 * 110.99338 * 183.95166 * 11 9 7 25 25 H 1.07991 * 119.98919 * 359.97438 * 13 12 9 26 26 H 1.08004 * 119.95737 * 180.02562 * 14 13 12 27 27 H 1.07997 * 119.94439 * 180.02562 * 15 14 13 28 28 H 1.09002 * 109.66126 * 287.84709 * 19 18 17 29 29 H 1.08998 * 109.59580 * 167.30385 * 19 18 17 30 30 H 1.08996 * 109.50526 * 288.65586 * 21 20 19 31 31 H 1.09001 * 109.52663 * 168.56911 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6240 -2.5575 0.8881 11 7 0.4068 -2.5761 -1.2014 12 6 2.2302 -3.6446 -0.0027 13 6 2.5994 -4.2366 -1.1948 14 6 3.4974 -5.2878 -1.1964 15 6 4.0265 -5.7491 -0.0053 16 6 3.6591 -5.1612 1.1903 17 6 2.7604 -4.1057 1.1944 18 8 2.3972 -3.5121 2.3626 19 6 2.6710 -4.2349 3.5667 20 8 4.0216 -4.7102 3.5167 21 6 4.2372 -5.6767 2.4840 22 1 -0.4850 0.8400 0.0004 23 1 0.9651 -2.5242 -2.0403 24 1 -0.1572 -3.4129 -1.1936 25 1 2.1859 -3.8788 -2.1261 26 1 3.7856 -5.7496 -2.1293 27 1 4.7281 -6.5702 -0.0092 28 1 1.9884 -5.0806 3.6501 29 1 2.5469 -3.5752 4.4254 30 1 3.7480 -6.6127 2.7537 31 1 5.3069 -5.8472 2.3621 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261032836.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:52 Heat of formation + Delta-G solvation = -51.241776 kcal Electronic energy + Delta-G solvation = -16748.037881 eV Core-core repulsion = 13994.810386 eV Total energy + Delta-G solvation = -2753.227495 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.51552 -37.75457 -36.04195 -34.51833 -31.77580 -30.74961 -29.29377 -26.29717 -25.87562 -25.31395 -22.91329 -20.93753 -19.64948 -18.11989 -16.64700 -16.36784 -16.24756 -15.37048 -14.74948 -14.31393 -14.27807 -13.98701 -13.74039 -13.48466 -12.93678 -12.51582 -12.21939 -11.87550 -11.43729 -11.09524 -10.86185 -10.75139 -10.53855 -10.46094 -10.02121 -9.65330 -9.21415 -8.36378 -8.14588 -7.57101 -7.07675 -5.79614 -3.92681 1.71211 1.93894 3.39043 3.45232 3.50178 3.59555 3.84273 4.21153 4.57644 4.81197 4.97099 5.11356 5.35726 5.40834 5.44363 5.47418 5.54437 5.87408 5.99745 6.08376 6.31003 6.53266 6.63671 6.77951 6.92558 6.98755 7.29598 7.56605 7.89427 7.98694 8.28886 8.67819 9.03899 9.20751 9.74137 11.24908 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.026039 B = 0.009064 C = 0.007767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.043289 B = 3088.328682 C = 3604.043643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.083 3.917 3 Si 0.884 3.116 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.519 4.519 8 H 0.051 0.949 9 C 0.261 3.739 10 H 0.054 0.946 11 N -0.810 5.810 12 C -0.094 4.094 13 C -0.099 4.099 14 C -0.150 4.150 15 C -0.105 4.105 16 C -0.213 4.213 17 C 0.134 3.866 18 O -0.305 6.305 19 C 0.220 3.780 20 O -0.392 6.392 21 C 0.108 3.892 22 H 0.254 0.746 23 H 0.317 0.683 24 H 0.298 0.702 25 H 0.124 0.876 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.054 0.946 29 H 0.138 0.862 30 H 0.063 0.937 31 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.473 -12.067 2.701 13.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.123 4.123 3 Si 0.711 3.289 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.558 4.558 8 H 0.069 0.931 9 C 0.152 3.848 10 H 0.071 0.929 11 N -0.336 5.336 12 C -0.097 4.097 13 C -0.117 4.117 14 C -0.168 4.168 15 C -0.123 4.123 16 C -0.214 4.214 17 C 0.089 3.911 18 O -0.219 6.219 19 C 0.107 3.893 20 O -0.312 6.312 21 C 0.032 3.968 22 H 0.064 0.936 23 H 0.130 0.870 24 H 0.108 0.892 25 H 0.142 0.858 26 H 0.134 0.866 27 H 0.134 0.866 28 H 0.072 0.928 29 H 0.155 0.845 30 H 0.081 0.919 31 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.991 -11.007 3.142 12.487 hybrid contribution 1.051 -0.251 -0.345 1.135 sum 6.042 -11.257 2.796 13.079 Atomic orbital electron populations 1.70104 1.05599 1.25522 1.47218 1.24916 0.94639 0.98407 0.94341 0.86758 0.80077 0.84079 0.77954 1.20805 1.21309 1.20039 1.20730 0.92037 0.89275 1.53742 0.93123 1.18062 0.87428 0.88464 0.90873 0.92879 1.59213 1.28085 1.41954 1.04388 1.21386 0.99734 0.98993 0.89586 1.20876 0.97609 0.95675 0.97575 1.20911 0.99786 0.98807 0.97344 1.20444 1.00483 0.99961 0.91408 1.20217 1.02866 1.01572 0.96775 1.18417 0.94067 0.92302 0.86332 1.86484 1.77774 1.45101 1.12575 1.24405 0.82345 0.94607 0.87939 1.88222 1.30182 1.59565 1.53240 1.21414 1.01395 0.90315 0.83676 0.93569 0.87016 0.89203 0.85781 0.86604 0.86586 0.92803 0.84489 0.91914 0.87653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.19 12.77 55.43 0.71 -24.48 16 2 C 0.08 2.38 5.39 -17.82 -0.10 2.29 16 3 Si 0.88 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.52 -14.76 8.71 -34.44 -0.30 -15.06 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.26 6.66 2.56 -70.02 -0.18 6.48 16 10 H 0.05 1.52 7.68 -51.93 -0.40 1.12 16 11 N -0.81 -19.13 8.13 -6.65 -0.05 -19.18 16 12 C -0.09 -2.06 5.00 -104.45 -0.52 -2.58 16 13 C -0.10 -1.86 9.26 -39.62 -0.37 -2.23 16 14 C -0.15 -2.40 10.04 -39.57 -0.40 -2.80 16 15 C -0.10 -1.61 9.72 -39.59 -0.38 -2.00 16 16 C -0.21 -3.68 5.82 -104.45 -0.61 -4.29 16 17 C 0.13 2.80 6.53 -39.23 -0.26 2.55 16 18 O -0.30 -6.42 9.59 -43.55 -0.42 -6.84 16 19 C 0.22 3.43 7.95 101.05 0.80 4.23 16 20 O -0.39 -6.29 10.97 -59.11 -0.65 -6.94 16 21 C 0.11 1.52 6.87 36.05 0.25 1.77 16 22 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 23 H 0.32 7.05 7.20 -39.29 -0.28 6.76 16 24 H 0.30 6.25 9.06 -39.29 -0.36 5.89 16 25 H 0.12 2.19 6.28 -52.49 -0.33 1.86 16 26 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 27 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 28 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 29 H 0.14 1.77 8.14 -51.93 -0.42 1.34 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.11 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 265.09 15.07 3.99 3.99 Total: -1.00 -32.44 265.09 -6.94 -39.38 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -3.44 Total: 8.71 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: -2.06 Total: -11.65 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.65 Total: -43.66 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -1.07 Total: -13.78 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -32.44 -6.94 -39.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261032836.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.861 kcal (2) G-P(sol) polarization free energy of solvation -32.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds