Wall clock time and date at job start Mon Mar 30 2020 03:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99846 * 2 1 4 4 H 1.48503 * 109.47052 * 270.00203 * 3 2 1 5 5 H 1.48495 * 109.47062 * 30.00029 * 3 2 1 6 6 H 1.48495 * 109.46859 * 150.00359 * 3 2 1 7 7 C 1.37875 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99926 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00151 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46799 * 299.99546 * 9 7 2 11 11 N 1.46900 * 109.47159 * 59.99490 * 9 7 2 12 12 C 1.50699 * 109.47114 * 179.97438 * 9 7 2 13 13 C 1.38129 * 120.00360 * 264.97516 * 12 9 7 14 14 C 1.38249 * 120.03151 * 180.02562 * 13 12 9 15 15 C 1.38262 * 120.08593 * 0.05309 * 14 13 12 16 16 C 1.38201 * 120.10392 * 0.02562 * 15 14 13 17 17 C 1.38632 * 119.92253 * 359.87866 * 16 15 14 18 18 O 1.35976 * 120.53579 * 180.45374 * 17 16 15 19 19 C 1.43085 * 116.82777 * 343.12998 * 18 17 16 20 20 O 1.43267 * 108.58290 * 47.59666 * 19 18 17 21 21 C 1.43073 * 113.03653 * 294.51987 * 20 19 18 22 22 H 0.97003 * 120.00237 * 359.97438 * 1 2 3 23 23 H 1.00899 * 110.99813 * 60.00498 * 11 9 7 24 24 H 1.00907 * 110.99338 * 183.95166 * 11 9 7 25 25 H 1.07991 * 119.98919 * 359.97438 * 13 12 9 26 26 H 1.08004 * 119.95737 * 180.02562 * 14 13 12 27 27 H 1.07997 * 119.94439 * 180.02562 * 15 14 13 28 28 H 1.09002 * 109.66126 * 287.84709 * 19 18 17 29 29 H 1.08998 * 109.59580 * 167.30385 * 19 18 17 30 30 H 1.08996 * 109.50526 * 288.65586 * 21 20 19 31 31 H 1.09001 * 109.52663 * 168.56911 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6240 -2.5575 0.8881 11 7 0.4068 -2.5761 -1.2014 12 6 2.2302 -3.6446 -0.0027 13 6 2.5994 -4.2366 -1.1948 14 6 3.4974 -5.2878 -1.1964 15 6 4.0265 -5.7491 -0.0053 16 6 3.6591 -5.1612 1.1903 17 6 2.7604 -4.1057 1.1944 18 8 2.3972 -3.5121 2.3626 19 6 2.6710 -4.2349 3.5667 20 8 4.0216 -4.7102 3.5167 21 6 4.2372 -5.6767 2.4840 22 1 -0.4850 0.8400 0.0004 23 1 0.9651 -2.5242 -2.0403 24 1 -0.1572 -3.4129 -1.1936 25 1 2.1859 -3.8788 -2.1261 26 1 3.7856 -5.7496 -2.1293 27 1 4.7281 -6.5702 -0.0092 28 1 1.9884 -5.0806 3.6501 29 1 2.5469 -3.5752 4.4254 30 1 3.7480 -6.6127 2.7537 31 1 5.3069 -5.8472 2.3621 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261032836.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:52 Heat of formation + Delta-G solvation = -75.092407 kcal Electronic energy + Delta-G solvation = -16749.072122 eV Core-core repulsion = 13994.810386 eV Total energy + Delta-G solvation = -2754.261736 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.84105 -39.12677 -37.36878 -36.29947 -33.76053 -32.13752 -30.84119 -28.04034 -27.39695 -26.57078 -24.67353 -22.31479 -21.20886 -19.45021 -18.50478 -17.93952 -17.56182 -16.68060 -16.53881 -16.05390 -15.79220 -15.31042 -15.13484 -14.94137 -14.47904 -14.16828 -13.83652 -13.25140 -13.06299 -12.85560 -12.69065 -12.41907 -12.23035 -11.74635 -11.65981 -11.30953 -11.08667 -10.55222 -9.54781 -9.05430 -8.90635 -7.96990 -6.17424 0.36030 0.55954 1.39895 1.40442 1.51021 2.34559 2.45599 2.65907 2.87829 3.25169 3.65715 3.83998 3.89763 4.16808 4.32333 4.33983 4.39460 4.50006 4.56548 4.67577 4.80725 5.07976 5.25980 5.39101 5.49550 5.66418 5.73256 5.79169 5.97379 6.20263 6.53040 6.67931 7.09801 7.25870 7.52959 9.06127 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.026039 B = 0.009064 C = 0.007767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.043289 B = 3088.328682 C = 3604.043643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.034 3.966 3 Si 0.946 3.054 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.277 1.277 7 C -0.531 4.531 8 H 0.033 0.967 9 C 0.272 3.728 10 H 0.006 0.994 11 N -0.819 5.819 12 C -0.134 4.134 13 C -0.107 4.107 14 C -0.145 4.145 15 C -0.091 4.091 16 C -0.216 4.216 17 C 0.103 3.897 18 O -0.346 6.346 19 C 0.213 3.787 20 O -0.405 6.405 21 C 0.104 3.896 22 H 0.255 0.745 23 H 0.324 0.676 24 H 0.312 0.688 25 H 0.127 0.873 26 H 0.154 0.846 27 H 0.164 0.836 28 H 0.077 0.923 29 H 0.155 0.845 30 H 0.094 0.906 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.440 -13.898 2.356 15.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.169 4.169 3 Si 0.772 3.228 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.202 1.202 7 C -0.570 4.570 8 H 0.051 0.949 9 C 0.162 3.838 10 H 0.024 0.976 11 N -0.347 5.347 12 C -0.137 4.137 13 C -0.126 4.126 14 C -0.163 4.163 15 C -0.109 4.109 16 C -0.217 4.217 17 C 0.058 3.942 18 O -0.263 6.263 19 C 0.101 3.899 20 O -0.325 6.325 21 C 0.028 3.972 22 H 0.064 0.936 23 H 0.138 0.862 24 H 0.123 0.877 25 H 0.145 0.855 26 H 0.172 0.828 27 H 0.181 0.819 28 H 0.094 0.906 29 H 0.172 0.828 30 H 0.112 0.888 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.968 -12.852 2.796 14.884 hybrid contribution 0.486 0.190 -0.217 0.565 sum 7.454 -12.663 2.579 14.918 Atomic orbital electron populations 1.70224 1.06859 1.26250 1.48315 1.25646 0.95493 1.01622 0.94132 0.85773 0.78603 0.80173 0.78243 1.19855 1.20590 1.20248 1.20965 0.91382 0.91269 1.53407 0.94850 1.17530 0.87531 0.89240 0.89493 0.97575 1.58979 1.28465 1.43065 1.04172 1.21088 1.01216 0.99574 0.91815 1.21016 0.98491 0.96605 0.96470 1.21337 0.98103 0.97355 0.99469 1.21020 0.99720 0.99998 0.90158 1.20683 1.01546 1.00169 0.99300 1.18716 0.95634 0.93967 0.85904 1.86416 1.78573 1.47179 1.14091 1.24774 0.82824 0.95683 0.86666 1.88194 1.30218 1.60284 1.53782 1.21766 1.03155 0.90661 0.81594 0.93578 0.86212 0.87713 0.85521 0.82788 0.81871 0.90556 0.82821 0.88842 0.84932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -53.77 12.77 21.45 0.27 -53.50 16 2 C 0.03 2.01 5.39 84.65 0.46 2.47 16 3 Si 0.95 46.23 29.54 68.60 2.03 48.25 16 4 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 6 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 7 C -0.53 -31.42 8.71 25.60 0.22 -31.20 16 8 H 0.03 2.03 7.74 -2.91 -0.02 2.01 16 9 C 0.27 14.56 2.56 43.42 0.11 14.67 16 10 H 0.01 0.39 7.68 -2.39 -0.02 0.38 16 11 N -0.82 -40.08 8.13 -174.95 -1.42 -41.50 16 12 C -0.13 -6.03 5.00 -19.75 -0.10 -6.13 16 13 C -0.11 -3.97 9.26 22.25 0.21 -3.76 16 14 C -0.14 -4.14 10.04 22.28 0.22 -3.92 16 15 C -0.09 -2.42 9.72 22.27 0.22 -2.20 16 16 C -0.22 -6.94 5.82 -19.75 -0.11 -7.05 16 17 C 0.10 4.33 6.53 22.50 0.15 4.48 16 18 O -0.35 -15.14 9.59 -70.45 -0.68 -15.82 16 19 C 0.21 6.55 7.95 113.37 0.90 7.45 16 20 O -0.40 -12.24 10.97 -126.14 -1.38 -13.62 16 21 C 0.10 2.55 6.87 71.26 0.49 3.04 16 22 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 23 H 0.32 14.81 7.20 -89.69 -0.65 14.16 16 24 H 0.31 13.55 9.06 -89.69 -0.81 12.74 16 25 H 0.13 4.43 6.28 -2.92 -0.02 4.41 16 26 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 27 H 0.16 2.80 8.06 -2.91 -0.02 2.77 16 28 H 0.08 1.95 8.13 -2.39 -0.02 1.93 16 29 H 0.15 3.96 8.14 -2.39 -0.02 3.94 16 30 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -73.35 265.09 1.29 -72.06 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: -0.29 Total: 26.29 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: 2.76 Total: -22.16 kcal Atomic # 7 Polarization: -93.85 SS G_CDS: -1.15 Total: -95.00 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -2.06 Total: -29.44 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.25 kcal Total: -73.35 1.29 -72.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261032836.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.030 kcal (2) G-P(sol) polarization free energy of solvation -73.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds