Wall clock time and date at job start Mon Mar 30 2020 03:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00271 * 2 1 4 4 H 1.48503 * 109.46907 * 269.99774 * 3 2 1 5 5 H 1.48497 * 109.47153 * 29.99637 * 3 2 1 6 6 H 1.48501 * 109.47248 * 149.99946 * 3 2 1 7 7 C 1.37881 * 119.99547 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99756 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00197 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47668 * 300.00335 * 9 7 2 11 11 N 1.46900 * 109.47126 * 60.00445 * 9 7 2 12 12 C 1.50706 * 109.47319 * 179.97438 * 9 7 2 13 13 C 1.38256 * 119.95193 * 264.98352 * 12 9 7 14 14 C 1.38240 * 120.08704 * 179.97438 * 13 12 9 15 15 C 1.38136 * 120.03487 * 0.11481 * 14 13 12 16 16 C 1.38798 * 119.98756 * 359.97438 * 15 14 13 17 17 C 1.38207 * 119.94400 * 85.00019 * 12 9 7 18 18 C 1.50783 * 119.66197 * 359.71164 * 17 12 9 19 19 O 1.43074 * 109.29379 * 163.86842 * 18 17 12 20 20 C 1.43267 * 113.03481 * 48.65094 * 19 18 17 21 21 O 1.35974 * 119.59723 * 179.56872 * 16 15 14 22 22 H 0.97001 * 119.99721 * 0.02562 * 1 2 3 23 23 H 1.00901 * 111.00183 * 296.04447 * 11 9 7 24 24 H 1.00909 * 111.00041 * 59.99722 * 11 9 7 25 25 H 1.08002 * 119.95309 * 359.97438 * 13 12 9 26 26 H 1.08001 * 119.98270 * 180.09619 * 14 13 12 27 27 H 1.08007 * 120.00428 * 179.97438 * 15 14 13 28 28 H 1.09000 * 109.49864 * 283.82071 * 18 17 12 29 29 H 1.08996 * 109.49752 * 43.88682 * 18 17 12 30 30 H 1.09001 * 109.61239 * 54.31773 * 20 19 18 31 31 H 1.09004 * 109.61059 * 174.83257 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 1 0.6245 -2.5571 0.8896 11 7 0.4059 -2.5767 -1.1997 12 6 2.2301 -3.6447 -0.0018 13 6 2.5981 -4.2369 -1.1957 14 6 3.4965 -5.2876 -1.2001 15 6 4.0265 -5.7492 -0.0109 16 6 3.6572 -5.1575 1.1891 17 6 2.7586 -4.1018 1.1906 18 6 2.3551 -3.4446 2.4863 19 8 2.7121 -4.2959 3.5794 20 6 4.0604 -4.7738 3.5006 21 8 4.1770 -5.6239 2.3558 22 1 -0.4850 0.8401 -0.0004 23 1 -0.3014 -1.8572 -1.1909 24 1 0.9637 -2.5251 -2.0391 25 1 2.1831 -3.8782 -2.1260 26 1 3.7840 -5.7479 -2.1339 27 1 4.7281 -6.5703 -0.0150 28 1 2.8704 -2.4892 2.5856 29 1 1.2778 -3.2790 2.4901 30 1 4.7426 -3.9296 3.4013 31 1 4.3016 -5.3384 4.4013 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261082175.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:34 Heat of formation + Delta-G solvation = -62.999939 kcal Electronic energy + Delta-G solvation = -16771.355836 eV Core-core repulsion = 14017.618469 eV Total energy + Delta-G solvation = -2753.737367 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.46243 -37.70341 -36.17256 -34.47787 -31.74063 -31.05087 -29.03625 -26.14295 -26.01820 -25.25798 -23.14792 -20.46101 -20.05120 -17.73556 -16.69215 -16.63591 -16.34652 -15.27678 -14.81352 -14.44145 -14.26178 -13.85257 -13.51473 -13.29002 -12.92890 -12.50125 -12.06103 -11.92879 -11.29425 -11.19983 -11.04670 -10.83676 -10.65589 -10.37971 -10.05828 -9.95633 -9.45601 -8.75727 -8.03961 -7.64144 -7.29397 -6.19170 -4.36946 1.87191 2.05700 3.15543 3.23799 3.26952 3.53178 3.95133 4.21292 4.41004 5.01320 5.02519 5.19025 5.32920 5.41107 5.65480 5.82096 5.87963 5.99044 6.11811 6.32425 6.57346 6.60414 6.80714 6.84665 7.05478 7.13361 7.36831 7.63111 7.64684 7.81040 7.98050 8.56265 8.82822 9.02106 9.35686 10.78131 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.026128 B = 0.009035 C = 0.007746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.405568 B = 3098.322324 C = 3613.682135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.068 3.932 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.056 0.944 9 C 0.237 3.763 10 H 0.052 0.948 11 N -0.850 5.850 12 C 0.014 3.986 13 C -0.140 4.140 14 C -0.091 4.091 15 C -0.172 4.172 16 C 0.122 3.878 17 C -0.201 4.201 18 C 0.108 3.892 19 O -0.395 6.395 20 C 0.223 3.777 21 O -0.340 6.340 22 H 0.267 0.733 23 H 0.357 0.643 24 H 0.313 0.687 25 H 0.125 0.875 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.077 0.923 29 H 0.117 0.883 30 H 0.056 0.944 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.272 -6.507 2.069 9.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.135 4.135 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.585 4.585 8 H 0.074 0.926 9 C 0.127 3.873 10 H 0.070 0.930 11 N -0.381 5.381 12 C 0.013 3.987 13 C -0.158 4.158 14 C -0.109 4.109 15 C -0.191 4.191 16 C 0.078 3.922 17 C -0.203 4.203 18 C 0.032 3.968 19 O -0.314 6.314 20 C 0.110 3.890 21 O -0.256 6.256 22 H 0.077 0.923 23 H 0.173 0.827 24 H 0.123 0.877 25 H 0.143 0.857 26 H 0.138 0.862 27 H 0.138 0.862 28 H 0.095 0.905 29 H 0.135 0.865 30 H 0.074 0.926 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.843 -7.320 2.556 9.709 hybrid contribution 1.006 2.215 -0.340 2.456 sum 6.849 -5.105 2.217 8.825 Atomic orbital electron populations 1.69734 1.05833 1.27413 1.49912 1.25012 0.94950 0.99320 0.94196 0.86505 0.79859 0.82872 0.78286 1.20532 1.20996 1.19845 1.21716 0.93595 0.90686 1.52487 0.92587 1.18052 0.89069 0.88148 0.92038 0.93019 1.59547 1.18425 1.56130 1.03963 1.20134 0.93864 0.94038 0.90686 1.20908 0.99135 0.97241 0.98564 1.20878 0.96736 0.96704 0.96627 1.20248 1.05071 1.03822 0.89959 1.18454 0.93915 0.94534 0.85294 1.20046 1.02485 1.00586 0.97160 1.21594 1.02559 0.91434 0.81171 1.88219 1.29917 1.66742 1.46543 1.24271 0.84627 0.92099 0.88009 1.86154 1.76258 1.46341 1.16877 0.92286 0.82696 0.87706 0.85678 0.86212 0.86204 0.90495 0.86527 0.92602 0.84967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.55 11.54 55.43 0.64 -22.91 16 2 C 0.07 1.76 5.38 -17.82 -0.10 1.67 16 3 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.55 -13.98 8.70 -34.44 -0.30 -14.28 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.24 5.67 2.44 -70.02 -0.17 5.50 16 10 H 0.05 1.35 6.38 -51.93 -0.33 1.02 16 11 N -0.85 -19.63 8.78 -6.65 -0.06 -19.69 16 12 C 0.01 0.30 4.99 -104.62 -0.52 -0.23 16 13 C -0.14 -2.73 9.27 -39.57 -0.37 -3.10 16 14 C -0.09 -1.55 10.04 -39.62 -0.40 -1.95 16 15 C -0.17 -3.00 9.97 -39.41 -0.39 -3.39 16 16 C 0.12 2.35 6.56 -39.23 -0.26 2.09 16 17 C -0.20 -4.15 5.82 -104.45 -0.61 -4.76 16 18 C 0.11 2.10 6.15 36.05 0.22 2.32 16 19 O -0.39 -7.06 10.97 -59.11 -0.65 -7.71 16 20 C 0.22 3.32 7.95 101.05 0.80 4.12 16 21 O -0.34 -5.96 10.48 -43.54 -0.46 -6.42 16 22 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 23 H 0.36 8.79 7.08 -39.29 -0.28 8.51 16 24 H 0.31 6.83 7.19 -39.29 -0.28 6.54 16 25 H 0.13 2.33 6.28 -52.49 -0.33 2.00 16 26 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 27 H 0.12 1.79 8.06 -52.48 -0.42 1.36 16 28 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 29 H 0.12 2.35 6.61 -51.93 -0.34 2.00 16 30 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 31 H 0.13 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 260.01 15.07 3.92 3.92 Total: -1.00 -27.72 260.01 -6.93 -34.66 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -3.22 Total: 14.90 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -2.09 Total: -12.01 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.58 Total: -42.60 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -1.10 Total: -14.13 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -27.72 -6.93 -34.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261082175.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.344 kcal (2) G-P(sol) polarization free energy of solvation -27.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds