Wall clock time and date at job start Mon Mar 30 2020 03:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00271 * 2 1 4 4 H 1.48503 * 109.46907 * 269.99774 * 3 2 1 5 5 H 1.48497 * 109.47153 * 29.99637 * 3 2 1 6 6 H 1.48501 * 109.47248 * 149.99946 * 3 2 1 7 7 C 1.37881 * 119.99547 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99756 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00197 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47668 * 300.00335 * 9 7 2 11 11 N 1.46900 * 109.47126 * 60.00445 * 9 7 2 12 12 C 1.50706 * 109.47319 * 179.97438 * 9 7 2 13 13 C 1.38256 * 119.95193 * 264.98352 * 12 9 7 14 14 C 1.38240 * 120.08704 * 179.97438 * 13 12 9 15 15 C 1.38136 * 120.03487 * 0.11481 * 14 13 12 16 16 C 1.38798 * 119.98756 * 359.97438 * 15 14 13 17 17 C 1.38207 * 119.94400 * 85.00019 * 12 9 7 18 18 C 1.50783 * 119.66197 * 359.71164 * 17 12 9 19 19 O 1.43074 * 109.29379 * 163.86842 * 18 17 12 20 20 C 1.43267 * 113.03481 * 48.65094 * 19 18 17 21 21 O 1.35974 * 119.59723 * 179.56872 * 16 15 14 22 22 H 0.97001 * 119.99721 * 0.02562 * 1 2 3 23 23 H 1.00901 * 111.00183 * 296.04447 * 11 9 7 24 24 H 1.00909 * 111.00041 * 59.99722 * 11 9 7 25 25 H 1.08002 * 119.95309 * 359.97438 * 13 12 9 26 26 H 1.08001 * 119.98270 * 180.09619 * 14 13 12 27 27 H 1.08007 * 120.00428 * 179.97438 * 15 14 13 28 28 H 1.09000 * 109.49864 * 283.82071 * 18 17 12 29 29 H 1.08996 * 109.49752 * 43.88682 * 18 17 12 30 30 H 1.09001 * 109.61239 * 54.31773 * 20 19 18 31 31 H 1.09004 * 109.61059 * 174.83257 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 1 0.6245 -2.5571 0.8896 11 7 0.4059 -2.5767 -1.1997 12 6 2.2301 -3.6447 -0.0018 13 6 2.5981 -4.2369 -1.1957 14 6 3.4965 -5.2876 -1.2001 15 6 4.0265 -5.7492 -0.0109 16 6 3.6572 -5.1575 1.1891 17 6 2.7586 -4.1018 1.1906 18 6 2.3551 -3.4446 2.4863 19 8 2.7121 -4.2959 3.5794 20 6 4.0604 -4.7738 3.5006 21 8 4.1770 -5.6239 2.3558 22 1 -0.4850 0.8401 -0.0004 23 1 -0.3014 -1.8572 -1.1909 24 1 0.9637 -2.5251 -2.0391 25 1 2.1831 -3.8782 -2.1260 26 1 3.7840 -5.7479 -2.1339 27 1 4.7281 -6.5703 -0.0150 28 1 2.8704 -2.4892 2.5856 29 1 1.2778 -3.2790 2.4901 30 1 4.7426 -3.9296 3.4013 31 1 4.3016 -5.3384 4.4013 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261082175.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:33 Heat of formation + Delta-G solvation = -81.626303 kcal Electronic energy + Delta-G solvation = -16772.163536 eV Core-core repulsion = 14017.618469 eV Total energy + Delta-G solvation = -2754.545067 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.86926 -39.17788 -37.61055 -36.22414 -33.55889 -32.58683 -30.58899 -28.01910 -27.44780 -26.64385 -24.87516 -21.88644 -21.65046 -19.17660 -18.61963 -18.15189 -17.70081 -16.82800 -16.47576 -15.94696 -15.88548 -15.31282 -15.02483 -14.79192 -14.73087 -13.97942 -13.74526 -13.39444 -13.04784 -12.88722 -12.80996 -12.40408 -12.32110 -12.02511 -11.70910 -11.51821 -11.03616 -10.71637 -9.57692 -9.21477 -9.08511 -8.14600 -6.40411 0.41223 0.57121 1.35396 1.38683 1.47351 2.20685 2.34385 2.64848 2.91112 3.03249 3.66970 3.83832 3.94138 4.23254 4.27182 4.34039 4.46130 4.49485 4.61998 4.81633 4.87834 5.07906 5.21625 5.36875 5.54645 5.59466 5.67785 5.90211 5.94969 6.05475 6.41217 6.60944 6.90078 7.09318 7.35989 8.79737 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.026128 B = 0.009035 C = 0.007746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.405568 B = 3098.322324 C = 3613.682135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.027 3.973 3 Si 0.956 3.044 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.553 4.553 8 H 0.045 0.955 9 C 0.243 3.757 10 H 0.020 0.980 11 N -0.843 5.843 12 C -0.014 4.014 13 C -0.153 4.153 14 C -0.078 4.078 15 C -0.167 4.167 16 C 0.111 3.889 17 C -0.221 4.221 18 C 0.115 3.885 19 O -0.403 6.403 20 C 0.212 3.788 21 O -0.341 6.341 22 H 0.269 0.731 23 H 0.347 0.653 24 H 0.320 0.680 25 H 0.129 0.871 26 H 0.162 0.838 27 H 0.152 0.848 28 H 0.068 0.932 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.050 -7.498 1.737 11.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.174 4.174 3 Si 0.782 3.218 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.199 1.199 7 C -0.592 4.592 8 H 0.063 0.937 9 C 0.133 3.867 10 H 0.038 0.962 11 N -0.373 5.373 12 C -0.015 4.015 13 C -0.172 4.172 14 C -0.096 4.096 15 C -0.185 4.185 16 C 0.067 3.933 17 C -0.223 4.223 18 C 0.040 3.960 19 O -0.323 6.323 20 C 0.100 3.900 21 O -0.258 6.258 22 H 0.078 0.922 23 H 0.161 0.839 24 H 0.131 0.869 25 H 0.146 0.854 26 H 0.179 0.821 27 H 0.170 0.830 28 H 0.086 0.914 29 H 0.116 0.884 30 H 0.086 0.914 31 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 7.633 -8.325 2.225 11.512 hybrid contribution 0.500 2.435 -0.198 2.493 sum 8.133 -5.890 2.027 10.244 Atomic orbital electron populations 1.69827 1.06832 1.28071 1.50394 1.25676 0.95683 1.02086 0.93961 0.85593 0.78581 0.79380 0.78294 1.20034 1.20718 1.19867 1.21845 0.93068 0.91885 1.52443 0.93708 1.17823 0.89037 0.88942 0.90948 0.96192 1.59513 1.18192 1.55421 1.04167 1.20019 0.94764 0.94466 0.92281 1.21070 1.00108 0.98235 0.97778 1.21283 0.94802 0.95155 0.98349 1.20703 1.04705 1.03883 0.89235 1.18710 0.93743 0.94171 0.86671 1.20171 1.03504 1.01677 0.96946 1.21317 1.01399 0.91459 0.81850 1.88194 1.31939 1.66416 1.45753 1.24892 0.83262 0.93080 0.88771 1.86147 1.75937 1.46785 1.16899 0.92201 0.83859 0.86896 0.85367 0.82068 0.83038 0.91398 0.88401 0.91435 0.80624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.11 11.54 21.45 0.25 -48.87 16 2 C 0.03 1.40 5.38 84.66 0.46 1.85 16 3 Si 0.96 41.83 29.54 68.60 2.03 43.85 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.55 -28.97 8.70 25.60 0.22 -28.75 16 8 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16 9 C 0.24 12.00 2.44 43.42 0.11 12.11 16 10 H 0.02 1.11 6.38 -2.39 -0.02 1.10 16 11 N -0.84 -39.80 8.78 -174.96 -1.54 -41.33 16 12 C -0.01 -0.64 4.99 -19.87 -0.10 -0.73 16 13 C -0.15 -5.82 9.27 22.27 0.21 -5.61 16 14 C -0.08 -2.41 10.04 22.25 0.22 -2.18 16 15 C -0.17 -5.26 9.97 22.38 0.22 -5.04 16 16 C 0.11 4.09 6.56 22.50 0.15 4.24 16 17 C -0.22 -9.17 5.82 -19.75 -0.11 -9.29 16 18 C 0.12 4.64 6.15 71.26 0.44 5.08 16 19 O -0.40 -14.27 10.97 -126.15 -1.38 -15.65 16 20 C 0.21 5.86 7.95 113.37 0.90 6.76 16 21 O -0.34 -11.18 10.48 -70.42 -0.74 -11.91 16 22 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 23 H 0.35 17.54 7.08 -89.69 -0.63 16.91 16 24 H 0.32 14.11 7.19 -89.69 -0.65 13.46 16 25 H 0.13 4.66 6.28 -2.91 -0.02 4.64 16 26 H 0.16 3.59 8.06 -2.91 -0.02 3.57 16 27 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 28 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 29 H 0.10 4.22 6.61 -2.39 -0.02 4.20 16 30 H 0.07 1.72 8.13 -2.39 -0.02 1.70 16 31 H 0.18 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -59.63 260.01 1.22 -58.41 By element: Atomic # 1 Polarization: 37.17 SS G_CDS: -0.11 Total: 37.06 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: 2.71 Total: -21.57 kcal Atomic # 7 Polarization: -88.91 SS G_CDS: -1.29 Total: -90.20 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -2.12 Total: -27.56 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.85 kcal Total: -59.63 1.22 -58.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261082175.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.214 kcal (2) G-P(sol) polarization free energy of solvation -59.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds