Wall clock time and date at job start Mon Mar 30 2020 03:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00299 * 2 1 4 4 H 1.48500 * 109.47009 * 269.99835 * 3 2 1 5 5 H 1.48495 * 109.47131 * 29.99888 * 3 2 1 6 6 H 1.48501 * 109.47121 * 150.00064 * 3 2 1 7 7 C 1.37878 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00352 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99685 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47200 * 179.97438 * 9 7 2 11 11 H 1.09008 * 110.28533 * 55.52087 * 10 9 7 12 12 N 1.46766 * 110.24613 * 293.54708 * 10 9 7 13 13 C 1.34413 * 111.30232 * 258.01532 * 12 10 9 14 14 O 1.21284 * 124.94565 * 179.56847 * 13 12 10 15 15 C 1.51284 * 110.11346 * 359.58991 * 13 12 10 16 16 C 1.54480 * 110.24859 * 177.50021 * 10 9 7 17 17 H 1.09003 * 110.96503 * 335.45977 * 16 10 9 18 18 C 1.50706 * 110.96588 * 211.70413 * 16 10 9 19 19 C 1.34509 * 125.78590 * 120.00424 * 18 16 10 20 20 C 1.41383 * 106.83751 * 179.97438 * 19 18 16 21 21 C 1.34512 * 106.84254 * 359.97438 * 20 19 18 22 22 O 1.34297 * 108.41689 * 359.73970 * 21 20 19 23 23 H 0.97003 * 119.99460 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47437 * 60.00325 * 9 7 2 25 25 H 1.08997 * 109.47481 * 299.99862 * 9 7 2 26 26 H 0.97003 * 124.35016 * 77.74861 * 12 10 9 27 27 H 1.09008 * 110.48406 * 225.06682 * 15 13 12 28 28 H 1.08998 * 110.48546 * 102.43268 * 15 13 12 29 29 H 1.08000 * 126.58271 * 359.95323 * 19 18 16 30 30 H 1.08007 * 126.57645 * 179.97438 * 20 19 18 31 31 H 1.07995 * 125.78892 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9306 -3.5733 0.8434 12 7 2.9932 -3.6907 -1.2618 13 6 2.5197 -4.6388 -2.0887 14 8 2.9507 -4.8712 -3.1983 15 6 1.3706 -5.3734 -1.4341 16 6 1.4918 -5.0094 0.0637 17 1 0.5079 -4.8852 0.5160 18 6 2.2980 -6.0435 0.8066 19 6 1.9154 -6.6841 1.9258 20 6 2.9684 -7.5597 2.2769 21 6 3.9313 -7.4023 1.3508 22 8 3.5171 -6.4872 0.4595 23 1 -0.4849 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6239 -2.5567 0.8903 26 1 3.7319 -3.0988 -1.4738 27 1 1.4758 -6.4492 -1.5750 28 1 0.4183 -5.0266 -1.8351 29 1 0.9829 -6.5541 2.4550 30 1 2.9947 -8.2270 3.1257 31 1 4.8751 -7.9266 1.3257 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261104763.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:52 Heat of formation + Delta-G solvation = -31.668716 kcal Electronic energy + Delta-G solvation = -16415.987252 eV Core-core repulsion = 13663.608508 eV Total energy + Delta-G solvation = -2752.378743 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.48728 -39.74053 -36.30648 -33.08139 -32.88069 -31.71634 -29.52655 -28.58958 -25.63168 -23.14921 -21.68300 -20.84241 -19.98673 -19.81589 -17.49339 -16.63916 -16.25277 -15.78793 -15.21982 -14.68433 -14.43444 -14.04239 -13.32978 -13.04020 -12.69632 -12.65293 -12.46729 -12.17952 -11.80209 -11.53041 -11.37030 -10.98853 -10.66204 -10.44218 -9.95672 -9.79844 -9.34978 -9.30083 -8.49438 -8.41954 -8.16089 -6.13024 -4.16241 1.85228 2.72081 3.12481 3.18961 3.26006 3.32980 3.34997 4.06444 4.35258 4.66737 4.80194 4.90085 5.12304 5.15651 5.24805 5.32677 5.64533 5.86781 5.94719 5.99910 6.07135 6.19045 6.23102 6.51516 6.62118 7.22431 7.29446 7.42448 7.63229 7.68824 7.83777 8.21618 8.86183 8.87439 9.48674 10.97981 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.028814 B = 0.007038 C = 0.006387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.527622 B = 3977.432205 C = 4382.576680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.014 3.986 10 C 0.143 3.857 11 H 0.080 0.920 12 N -0.702 5.702 13 C 0.521 3.479 14 O -0.559 6.559 15 C -0.148 4.148 16 C -0.026 4.026 17 H 0.128 0.872 18 C 0.009 3.991 19 C -0.212 4.212 20 C -0.215 4.215 21 C -0.049 4.049 22 O -0.169 6.169 23 H 0.262 0.738 24 H 0.026 0.974 25 H 0.033 0.967 26 H 0.410 0.590 27 H 0.095 0.905 28 H 0.112 0.888 29 H 0.149 0.851 30 H 0.145 0.855 31 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.125 -12.438 4.440 13.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.024 4.024 10 C 0.038 3.962 11 H 0.098 0.902 12 N -0.354 5.354 13 C 0.307 3.693 14 O -0.439 6.439 15 C -0.188 4.188 16 C -0.045 4.045 17 H 0.146 0.854 18 C -0.041 4.041 19 C -0.231 4.231 20 C -0.234 4.234 21 C -0.117 4.117 22 O -0.064 6.064 23 H 0.072 0.928 24 H 0.044 0.956 25 H 0.051 0.949 26 H 0.249 0.751 27 H 0.114 0.886 28 H 0.130 0.870 29 H 0.166 0.834 30 H 0.163 0.837 31 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 3.258 -12.407 3.665 13.341 hybrid contribution 0.661 1.137 0.309 1.351 sum 3.919 -11.270 3.974 12.576 Atomic orbital electron populations 1.69937 1.06037 1.26891 1.50174 1.24974 0.94856 0.99301 0.95009 0.86580 0.79820 0.83359 0.78188 1.20626 1.21156 1.19860 1.21042 0.92887 0.90609 1.51469 0.92662 1.19542 0.93600 0.90917 0.98348 1.22024 0.94723 0.93691 0.85777 0.90178 1.46160 1.35503 1.35758 1.17976 1.20644 0.83581 0.80525 0.84556 1.90679 1.64038 1.69583 1.19599 1.22374 0.99995 1.02003 0.94402 1.20975 0.98220 0.91239 0.94058 0.85383 1.22322 0.84939 0.99515 0.97328 1.21577 1.01856 1.00912 0.98748 1.21780 0.95103 1.04124 1.02366 1.23980 1.01023 0.95452 0.91270 1.84064 1.30322 1.45995 1.46061 0.92805 0.95608 0.94924 0.75146 0.88636 0.87030 0.83357 0.83733 0.78534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.35 13.29 55.43 0.74 -24.61 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 7 C -0.52 -13.56 8.90 -34.44 -0.31 -13.86 16 8 H 0.06 1.39 7.74 -52.49 -0.41 0.99 16 9 C 0.01 0.31 4.58 -27.88 -0.13 0.18 16 10 C 0.14 2.64 2.99 -67.01 -0.20 2.44 16 11 H 0.08 1.49 7.90 -51.92 -0.41 1.08 16 12 N -0.70 -13.33 5.66 -52.76 -0.30 -13.63 16 13 C 0.52 10.14 8.43 -10.86 -0.09 10.05 16 14 O -0.56 -12.66 18.03 5.55 0.10 -12.56 16 15 C -0.15 -2.31 6.40 -26.75 -0.17 -2.48 16 16 C -0.03 -0.40 3.12 -90.14 -0.28 -0.68 16 17 H 0.13 1.74 7.88 -51.93 -0.41 1.33 16 18 C 0.01 0.14 5.75 -35.62 -0.20 -0.07 16 19 C -0.21 -2.79 10.80 -39.70 -0.43 -3.22 16 20 C -0.21 -2.54 10.91 -39.70 -0.43 -2.97 16 21 C -0.05 -0.60 12.09 29.42 0.36 -0.24 16 22 O -0.17 -2.59 10.65 5.74 0.06 -2.53 16 23 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 24 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.41 7.65 8.96 -40.82 -0.37 7.29 16 27 H 0.10 1.37 7.90 -51.92 -0.41 0.96 16 28 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 29 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.14 1.33 8.06 -52.48 -0.42 0.91 16 31 H 0.20 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 275.19 15.07 4.15 4.15 Total: -1.00 -31.47 275.19 -5.93 -37.40 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -3.67 Total: 5.22 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -1.99 Total: -9.31 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.44 Total: -38.24 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.16 Total: -15.09 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.47 -5.93 -37.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261104763.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.735 kcal (2) G-P(sol) polarization free energy of solvation -31.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds