Wall clock time and date at job start Mon Mar 30 2020 03:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00299 * 2 1 4 4 H 1.48500 * 109.47009 * 269.99835 * 3 2 1 5 5 H 1.48495 * 109.47131 * 29.99888 * 3 2 1 6 6 H 1.48501 * 109.47121 * 150.00064 * 3 2 1 7 7 C 1.37878 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00352 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99685 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47200 * 179.97438 * 9 7 2 11 11 H 1.09008 * 110.28533 * 55.52087 * 10 9 7 12 12 N 1.46766 * 110.24613 * 293.54708 * 10 9 7 13 13 C 1.34413 * 111.30232 * 258.01532 * 12 10 9 14 14 O 1.21284 * 124.94565 * 179.56847 * 13 12 10 15 15 C 1.51284 * 110.11346 * 359.58991 * 13 12 10 16 16 C 1.54480 * 110.24859 * 177.50021 * 10 9 7 17 17 H 1.09003 * 110.96503 * 335.45977 * 16 10 9 18 18 C 1.50706 * 110.96588 * 211.70413 * 16 10 9 19 19 C 1.34509 * 125.78590 * 120.00424 * 18 16 10 20 20 C 1.41383 * 106.83751 * 179.97438 * 19 18 16 21 21 C 1.34512 * 106.84254 * 359.97438 * 20 19 18 22 22 O 1.34297 * 108.41689 * 359.73970 * 21 20 19 23 23 H 0.97003 * 119.99460 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47437 * 60.00325 * 9 7 2 25 25 H 1.08997 * 109.47481 * 299.99862 * 9 7 2 26 26 H 0.97003 * 124.35016 * 77.74861 * 12 10 9 27 27 H 1.09008 * 110.48406 * 225.06682 * 15 13 12 28 28 H 1.08998 * 110.48546 * 102.43268 * 15 13 12 29 29 H 1.08000 * 126.58271 * 359.95323 * 19 18 16 30 30 H 1.08007 * 126.57645 * 179.97438 * 20 19 18 31 31 H 1.07995 * 125.78892 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9306 -3.5733 0.8434 12 7 2.9932 -3.6907 -1.2618 13 6 2.5197 -4.6388 -2.0887 14 8 2.9507 -4.8712 -3.1983 15 6 1.3706 -5.3734 -1.4341 16 6 1.4918 -5.0094 0.0637 17 1 0.5079 -4.8852 0.5160 18 6 2.2980 -6.0435 0.8066 19 6 1.9154 -6.6841 1.9258 20 6 2.9684 -7.5597 2.2769 21 6 3.9313 -7.4023 1.3508 22 8 3.5171 -6.4872 0.4595 23 1 -0.4849 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6239 -2.5567 0.8903 26 1 3.7319 -3.0988 -1.4738 27 1 1.4758 -6.4492 -1.5750 28 1 0.4183 -5.0266 -1.8351 29 1 0.9829 -6.5541 2.4550 30 1 2.9947 -8.2270 3.1257 31 1 4.8751 -7.9266 1.3257 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261104763.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:51 Heat of formation + Delta-G solvation = -52.779362 kcal Electronic energy + Delta-G solvation = -16416.902678 eV Core-core repulsion = 13663.608508 eV Total energy + Delta-G solvation = -2753.294170 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.50409 -41.22471 -37.90735 -35.01260 -33.95780 -32.99860 -31.33851 -29.70822 -27.30305 -24.72880 -22.74629 -22.23414 -21.43814 -21.00198 -18.85644 -18.17804 -17.92709 -16.86989 -16.78163 -16.29012 -16.06022 -15.26392 -14.89153 -14.44667 -14.17640 -13.92377 -13.62668 -13.55975 -13.32613 -12.96269 -12.88709 -12.68199 -12.34466 -12.13796 -11.80248 -11.22464 -10.93779 -10.74241 -10.56057 -9.92370 -9.29431 -8.19486 -6.27700 0.84365 1.40316 1.42093 1.50928 1.64146 1.79171 2.16607 2.40736 2.56519 3.16481 3.42144 3.58609 3.63610 3.98349 4.23385 4.28304 4.53844 4.63533 4.69528 4.74971 4.88302 5.05611 5.11949 5.27709 5.39763 5.54586 5.69984 5.76950 5.98061 6.12202 6.27424 6.31318 6.85719 7.30954 7.40440 8.91498 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.028814 B = 0.007038 C = 0.006387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.527622 B = 3977.432205 C = 4382.576680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.953 3.047 4 H -0.281 1.281 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.533 4.533 8 H 0.058 0.942 9 C 0.021 3.979 10 C 0.152 3.848 11 H 0.080 0.920 12 N -0.703 5.703 13 C 0.513 3.487 14 O -0.596 6.596 15 C -0.140 4.140 16 C -0.012 4.012 17 H 0.146 0.854 18 C -0.021 4.021 19 C -0.206 4.206 20 C -0.220 4.220 21 C -0.051 4.051 22 O -0.195 6.195 23 H 0.263 0.737 24 H 0.003 0.997 25 H 0.024 0.976 26 H 0.407 0.593 27 H 0.112 0.888 28 H 0.124 0.876 29 H 0.166 0.834 30 H 0.172 0.828 31 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.661 -13.484 5.608 15.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.779 3.221 4 H -0.207 1.207 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.571 4.571 8 H 0.076 0.924 9 C -0.017 4.017 10 C 0.047 3.953 11 H 0.098 0.902 12 N -0.354 5.354 13 C 0.301 3.699 14 O -0.479 6.479 15 C -0.179 4.179 16 C -0.030 4.030 17 H 0.164 0.836 18 C -0.071 4.071 19 C -0.225 4.225 20 C -0.239 4.239 21 C -0.117 4.117 22 O -0.092 6.092 23 H 0.071 0.929 24 H 0.021 0.979 25 H 0.042 0.958 26 H 0.245 0.755 27 H 0.130 0.870 28 H 0.142 0.858 29 H 0.183 0.817 30 H 0.190 0.810 31 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 3.798 -13.457 4.858 14.802 hybrid contribution 0.539 1.414 -0.015 1.513 sum 4.336 -12.043 4.842 13.685 Atomic orbital electron populations 1.70043 1.07389 1.27609 1.51629 1.25767 0.95633 1.02683 0.95057 0.85623 0.78910 0.79542 0.78020 1.20690 1.20906 1.18880 1.21503 0.93352 0.92013 1.50239 0.92362 1.19392 0.93889 0.91748 0.96688 1.21801 0.93851 0.94210 0.85419 0.90172 1.46257 1.35311 1.35582 1.18244 1.21277 0.84111 0.80492 0.84057 1.90648 1.65407 1.70668 1.21187 1.22396 0.98716 1.02493 0.94345 1.20845 0.98693 0.89441 0.94044 0.83641 1.22193 0.85516 1.00871 0.98502 1.21932 1.02674 1.00098 0.97763 1.22154 0.94404 1.04209 1.03135 1.24773 1.02225 0.94356 0.90388 1.84043 1.30695 1.47064 1.47369 0.92851 0.97853 0.95825 0.75468 0.86970 0.85782 0.81688 0.81030 0.75296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.14 13.29 21.45 0.28 -52.85 16 2 C 0.01 0.38 5.46 84.66 0.46 0.85 16 3 Si 0.95 42.81 29.54 68.60 2.03 44.84 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 7 C -0.53 -27.73 8.90 25.60 0.23 -27.50 16 8 H 0.06 2.92 7.74 -2.91 -0.02 2.90 16 9 C 0.02 0.95 4.58 29.85 0.14 1.09 16 10 C 0.15 5.55 2.99 45.44 0.14 5.69 16 11 H 0.08 2.94 7.90 -2.38 -0.02 2.92 16 12 N -0.70 -26.74 5.66 -439.42 -2.49 -29.23 16 13 C 0.51 19.91 8.43 87.90 0.74 20.65 16 14 O -0.60 -27.23 18.03 -3.04 -0.05 -27.28 16 15 C -0.14 -4.21 6.40 30.58 0.20 -4.02 16 16 C -0.01 -0.34 3.12 -10.48 -0.03 -0.37 16 17 H 0.15 3.70 7.88 -2.39 -0.02 3.68 16 18 C -0.02 -0.59 5.75 24.83 0.14 -0.44 16 19 C -0.21 -4.86 10.80 22.19 0.24 -4.62 16 20 C -0.22 -4.49 10.91 22.19 0.24 -4.25 16 21 C -0.05 -1.08 12.09 66.97 0.81 -0.27 16 22 O -0.19 -5.64 10.65 -2.38 -0.03 -5.67 16 23 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 24 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 25 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.41 15.39 8.96 -92.71 -0.83 14.56 16 27 H 0.11 3.03 7.90 -2.38 -0.02 3.01 16 28 H 0.12 3.43 8.14 -2.39 -0.02 3.41 16 29 H 0.17 3.21 8.06 -2.91 -0.02 3.19 16 30 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 31 H 0.23 3.00 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -67.23 275.19 3.36 -63.87 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 0.31 Total: 19.54 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: 3.30 Total: -13.21 kcal Atomic # 7 Polarization: -79.88 SS G_CDS: -2.20 Total: -82.08 kcal Atomic # 8 Polarization: -32.87 SS G_CDS: -0.08 Total: -32.95 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -67.23 3.36 -63.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261104763.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.088 kcal (2) G-P(sol) polarization free energy of solvation -67.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds