Wall clock time and date at job start Mon Mar 30 2020 03:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40059 * 125.76739 * 2 1 4 4 C 1.30469 * 109.35358 * 180.02562 * 3 2 1 5 5 C 1.41000 * 108.09572 * 359.97438 * 4 3 2 6 6 C 1.34573 * 125.76593 * 179.97438 * 2 1 3 7 7 N 1.37116 * 134.37894 * 359.97438 * 6 2 1 8 8 H 0.97004 * 119.93116 * 359.97438 * 7 6 2 9 9 C 1.37255 * 120.14162 * 180.02562 * 7 6 2 10 10 N 1.33382 * 118.90832 * 180.02562 * 9 7 6 11 11 C 1.33064 * 119.99945 * 180.02562 * 10 9 7 12 12 H 1.07999 * 120.00194 * 359.97438 * 11 10 9 13 13 C 1.39862 * 119.99662 * 179.97438 * 11 10 9 14 14 N 1.31294 * 120.00214 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99999 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47055 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47483 * 119.99632 * 15 13 11 18 18 H 1.48497 * 109.46761 * 239.99786 * 15 13 11 19 19 N 1.33245 * 122.18943 * 0.27931 * 9 7 6 20 20 C 1.32295 * 121.51531 * 359.41592 * 19 9 7 21 21 O 1.35135 * 120.51021 * 180.28331 * 20 19 9 22 22 H 1.09005 * 109.47431 * 270.00108 * 1 2 3 23 23 H 1.09001 * 109.47591 * 29.99626 * 1 2 3 24 24 H 1.09000 * 109.47802 * 150.00444 * 1 2 3 25 25 H 1.08002 * 125.95020 * 180.02562 * 4 3 2 26 26 H 0.96991 * 120.00379 * 180.02562 * 14 13 11 27 27 H 0.96693 * 113.99272 * 270.30708 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2836 1.1364 0.0000 4 6 3.5351 0.7678 -0.0006 5 6 3.5765 -0.6416 -0.0003 6 6 2.2515 -1.0919 0.0005 7 7 2.0168 -2.4429 0.0015 8 1 1.1058 -2.7758 0.0025 9 6 3.0683 -3.3251 0.0023 10 7 2.8118 -4.6340 0.0028 11 6 3.8147 -5.5085 0.0041 12 1 4.8364 -5.1585 0.0043 13 6 3.5457 -6.8810 0.0051 14 7 2.3036 -7.3065 0.0054 15 14 4.9535 -8.1088 0.0076 16 1 6.2468 -7.3789 0.0075 17 1 4.8654 -8.9605 1.2208 18 1 4.8675 -8.9628 -1.2041 19 7 4.3369 -2.9174 0.0076 20 6 4.6503 -1.6322 0.0009 21 8 5.9439 -1.2414 0.0007 22 1 -0.3634 0.0000 1.0277 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3635 -0.8900 -0.5137 25 1 4.3904 1.4273 -0.0003 26 1 2.1170 -8.2583 0.0065 27 1 6.3203 -1.1273 0.8840 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380025005.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:36 Heat of formation + Delta-G solvation = 69.026619 kcal Electronic energy + Delta-G solvation = -15908.897298 eV Core-core repulsion = 13089.637439 eV Total energy + Delta-G solvation = -2819.259858 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 235.081 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.40933 -39.55855 -38.17058 -36.36512 -34.66770 -33.83097 -33.03641 -29.88909 -27.79448 -26.92199 -24.15451 -23.10260 -22.09765 -19.85087 -19.34454 -18.77191 -18.09253 -17.67853 -16.96316 -16.79524 -15.85929 -15.55995 -15.02774 -14.61378 -14.18815 -13.77875 -13.66121 -13.56105 -13.37812 -13.03243 -12.52336 -12.08242 -11.94530 -11.88361 -11.53106 -10.50088 -10.35894 -9.84138 -9.76737 -9.05390 -9.03003 -5.85529 0.35496 0.87257 1.16347 1.36575 1.40196 1.55847 1.82543 2.12152 2.54627 2.56279 3.19271 3.64252 3.69612 4.02802 4.28927 4.36510 4.53550 4.62426 4.69576 4.87512 5.17320 5.28313 5.48218 5.78998 5.93236 6.21220 6.37433 6.70961 6.88981 7.17683 7.71885 7.94440 8.37639 Molecular weight = 235.08amu Principal moments of inertia in cm(-1) A = 0.036540 B = 0.007061 C = 0.005940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.102287 B = 3964.394427 C = 4712.828146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.386 5.386 3 N -0.329 5.329 4 C 0.126 3.874 5 C -0.364 4.364 6 C 0.381 3.619 7 N -0.617 5.617 8 H 0.403 0.597 9 C 0.185 3.815 10 N -0.386 5.386 11 C -0.220 4.220 12 H 0.071 0.929 13 C 0.019 3.981 14 N -0.775 5.775 15 Si 1.018 2.982 16 H -0.257 1.257 17 H -0.249 1.249 18 H -0.252 1.252 19 N -0.497 5.497 20 C 0.305 3.695 21 O -0.479 6.479 22 H 0.087 0.913 23 H 0.112 0.888 24 H 0.089 0.911 25 H 0.220 0.780 26 H 0.303 0.697 27 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.517 6.844 1.652 7.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.174 5.174 3 N -0.150 5.150 4 C -0.061 4.061 5 C -0.385 4.385 6 C 0.144 3.856 7 N -0.249 5.249 8 H 0.238 0.762 9 C -0.154 4.154 10 N -0.105 5.105 11 C -0.381 4.381 12 H 0.089 0.911 13 C -0.203 4.203 14 N -0.398 5.398 15 Si 0.834 3.166 16 H -0.180 1.180 17 H -0.173 1.173 18 H -0.176 1.176 19 N -0.221 5.221 20 C 0.087 3.913 21 O -0.285 6.285 22 H 0.105 0.895 23 H 0.130 0.870 24 H 0.108 0.892 25 H 0.237 0.763 26 H 0.114 0.886 27 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -1.917 6.362 1.059 6.728 hybrid contribution 0.568 -0.481 0.446 0.868 sum -1.349 5.881 1.504 6.218 Atomic orbital electron populations 1.22156 0.72108 1.05748 1.04657 1.48220 1.07351 1.00167 1.61699 1.77128 1.01929 1.04494 1.31440 1.23824 0.95563 0.92291 0.94427 1.19739 0.90990 0.94839 1.32947 1.18308 0.91976 0.82272 0.93037 1.40004 1.08963 0.99231 1.76750 0.76188 1.17698 0.79563 0.87881 1.30286 1.67555 1.37022 0.98234 1.07695 1.20871 0.91978 0.90571 1.34658 0.91124 1.27655 1.00788 1.00302 0.91550 1.69951 1.22617 1.19091 1.28176 0.84605 0.76064 0.75841 0.80097 1.18046 1.17326 1.17561 1.67695 1.19842 1.18349 1.16234 1.19558 0.83385 0.85566 1.02810 1.84539 1.21653 1.87972 1.34360 0.89463 0.86989 0.89240 0.76318 0.88621 0.74152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.10 11.45 127.77 1.46 3.56 15 2 N -0.39 -13.07 3.99 -365.72 -1.46 -14.53 15 3 N -0.33 -11.13 12.48 -56.46 -0.70 -11.84 15 4 C 0.13 4.21 12.07 85.57 1.03 5.24 15 5 C -0.36 -15.18 6.38 -20.15 -0.13 -15.31 15 6 C 0.38 15.81 8.05 133.23 1.07 16.88 15 7 N -0.62 -28.47 5.42 -194.99 -1.06 -29.53 15 8 H 0.40 16.91 8.92 -92.71 -0.83 16.08 15 9 C 0.18 10.11 8.36 261.32 2.18 12.30 15 10 N -0.39 -22.51 10.09 -196.19 -1.98 -24.49 15 11 C -0.22 -12.41 9.52 84.90 0.81 -11.60 15 12 H 0.07 4.08 6.87 -2.91 -0.02 4.06 15 13 C 0.02 0.91 5.52 85.17 0.47 1.38 15 14 N -0.77 -39.10 13.61 21.85 0.30 -38.80 15 15 Si 1.02 36.33 29.57 68.60 2.03 38.36 15 16 H -0.26 -9.32 7.11 99.48 0.71 -8.62 15 17 H -0.25 -8.15 7.11 99.48 0.71 -7.44 15 18 H -0.25 -8.31 7.11 99.48 0.71 -7.60 15 19 N -0.50 -26.73 8.85 -305.87 -2.71 -29.43 15 20 C 0.31 14.04 8.05 86.66 0.70 14.73 15 21 O -0.48 -18.09 13.58 -84.12 -1.14 -19.23 15 22 H 0.09 1.68 8.14 -2.38 -0.02 1.66 15 23 H 0.11 2.02 8.14 -2.39 -0.02 2.01 15 24 H 0.09 1.84 8.14 -2.39 -0.02 1.82 15 25 H 0.22 5.33 8.06 -2.91 -0.02 5.31 15 26 H 0.30 13.11 8.31 -92.71 -0.77 12.34 15 27 H 0.40 10.73 9.06 -74.06 -0.67 10.06 15 Total: -1.00 -73.28 253.96 0.63 -72.65 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: -0.25 Total: 29.68 kcal Atomic # 6 Polarization: 19.58 SS G_CDS: 7.60 Total: 27.18 kcal Atomic # 7 Polarization: -141.02 SS G_CDS: -7.61 Total: -148.63 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -1.14 Total: -19.23 kcal Atomic # 14 Polarization: 36.33 SS G_CDS: 2.03 Total: 38.36 kcal Total: -73.28 0.63 -72.65 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380025005.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.677 kcal (2) G-P(sol) polarization free energy of solvation -73.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds