Wall clock time and date at job start Mon Mar 30 2020 03:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86797 * 120.00447 * 2 1 4 4 H 1.48497 * 109.47157 * 240.00065 * 3 2 1 5 5 H 1.48497 * 109.46976 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47017 * 119.99928 * 3 2 1 7 7 C 1.39937 * 119.99363 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99816 * 163.93819 * 7 2 1 9 9 C 1.41400 * 120.00254 * 343.92916 * 7 2 1 10 10 C 1.40779 * 120.20972 * 333.79755 * 9 7 2 11 11 C 1.37653 * 119.89026 * 179.97438 * 10 9 7 12 12 C 1.38512 * 120.32815 * 0.02562 * 11 10 9 13 13 C 1.39300 * 120.42445 * 359.70428 * 12 11 10 14 14 N 1.39682 * 119.95196 * 180.30289 * 13 12 11 15 15 C 1.38314 * 120.09322 * 0.55367 * 13 12 11 16 16 C 1.50695 * 120.15856 * 179.74567 * 15 13 12 17 17 C 1.53002 * 109.47258 * 269.72311 * 16 15 13 18 18 C 1.50706 * 109.46953 * 180.02562 * 17 16 15 19 19 O 1.20821 * 120.00301 * 0.02562 * 18 17 16 20 20 O 1.34225 * 119.99765 * 179.72385 * 18 17 16 21 21 H 0.97000 * 119.99722 * 359.97438 * 1 2 3 22 22 H 1.07996 * 120.05336 * 359.94708 * 10 9 7 23 23 H 1.08005 * 119.83236 * 180.02562 * 11 10 9 24 24 H 1.08004 * 119.78427 * 180.02562 * 12 11 10 25 25 H 0.96995 * 120.00240 * 180.25398 * 14 13 12 26 26 H 0.97005 * 120.00218 * 0.25203 * 14 13 12 27 27 H 1.09005 * 109.46870 * 149.72256 * 16 15 13 28 28 H 1.09003 * 109.47521 * 29.72617 * 16 15 13 29 29 H 1.08998 * 109.46867 * 60.00316 * 17 16 15 30 30 H 1.08999 * 109.46972 * 299.99825 * 17 16 15 31 31 H 0.96703 * 117.00182 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 3.0962 1.6963 -1.2125 5 1 1.2775 2.7464 0.0006 6 1 3.0962 1.6962 1.2126 7 6 2.0079 -1.2120 -0.0005 8 1 3.0563 -1.2302 -0.2593 9 6 1.3422 -2.4127 0.3379 10 6 0.2107 -2.3837 1.1750 11 6 -0.4325 -3.5565 1.4999 12 6 0.0282 -4.7664 1.0075 13 6 1.1431 -4.8101 0.1736 14 7 1.5954 -6.0351 -0.3224 15 6 1.8060 -3.6429 -0.1597 16 6 3.0158 -3.6891 -1.0571 17 6 4.2766 -3.8512 -0.2055 18 6 5.4865 -3.8967 -1.1030 19 8 5.3540 -3.8081 -2.3006 20 8 6.7117 -4.0296 -0.5713 21 1 -0.4850 0.8401 0.0004 22 1 -0.1517 -1.4428 1.5621 23 1 -1.3008 -3.5331 2.1418 24 1 -0.4835 -5.6813 1.2677 25 1 2.3739 -6.0668 -0.9001 26 1 1.1310 -6.8542 -0.0891 27 1 3.0799 -2.7630 -1.6285 28 1 2.9286 -4.5330 -1.7414 29 1 4.2125 -4.7772 0.3658 30 1 4.3638 -3.0072 0.4787 31 1 7.4571 -4.0543 -1.1869 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396121522.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:31 Heat of formation + Delta-G solvation = -89.349278 kcal Electronic energy + Delta-G solvation = -16306.151453 eV Core-core repulsion = 13551.271493 eV Total energy + Delta-G solvation = -2754.879960 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.93449 -38.07249 -35.89292 -34.33203 -33.15153 -32.30561 -29.26952 -27.27942 -25.39321 -24.07024 -20.91583 -20.68365 -19.23029 -17.78009 -17.27760 -16.29779 -16.11187 -15.50354 -15.25581 -14.63091 -13.92355 -13.30041 -13.07012 -12.78923 -12.42831 -12.19507 -11.76204 -11.45455 -11.27870 -11.13219 -11.02794 -10.71791 -10.51788 -10.46160 -10.23731 -9.60766 -9.39616 -9.23303 -8.91339 -7.29403 -6.72843 -6.24929 -4.34329 2.54031 2.82819 3.08459 3.10455 3.12485 3.35922 3.49195 3.95628 4.70231 4.88279 5.44669 5.64381 5.68519 5.93298 6.21580 6.32883 6.43315 6.56903 6.72478 6.83544 6.99735 7.10924 7.17053 7.34650 7.48652 7.85896 7.92151 8.12794 8.18549 8.25146 8.49472 8.71984 8.79479 8.96711 9.08890 10.22944 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.016320 B = 0.011110 C = 0.007025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.231992 B = 2519.540353 C = 3984.955959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.078 3.922 3 Si 0.903 3.097 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.460 4.460 8 H 0.077 0.923 9 C 0.151 3.849 10 C -0.199 4.199 11 C -0.072 4.072 12 C -0.306 4.306 13 C 0.235 3.765 14 N -0.895 5.895 15 C -0.267 4.267 16 C -0.029 4.029 17 C -0.108 4.108 18 C 0.475 3.525 19 O -0.520 6.520 20 O -0.524 6.524 21 H 0.280 0.720 22 H 0.114 0.886 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.385 0.615 26 H 0.383 0.617 27 H 0.076 0.924 28 H 0.047 0.953 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.613 -4.833 0.686 8.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.489 4.489 8 H 0.095 0.905 9 C 0.148 3.852 10 C -0.220 4.220 11 C -0.091 4.091 12 C -0.330 4.330 13 C 0.135 3.865 14 N -0.437 5.437 15 C -0.273 4.273 16 C -0.066 4.066 17 C -0.145 4.145 18 C 0.318 3.682 19 O -0.408 6.408 20 O -0.336 6.336 21 H 0.091 0.909 22 H 0.132 0.868 23 H 0.103 0.897 24 H 0.102 0.898 25 H 0.213 0.787 26 H 0.209 0.791 27 H 0.095 0.905 28 H 0.066 0.934 29 H 0.114 0.886 30 H 0.127 0.873 31 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 5.993 -4.547 0.643 7.550 hybrid contribution 0.864 0.418 -0.563 1.112 sum 6.856 -4.129 0.081 8.004 Atomic orbital electron populations 1.69845 1.07502 1.29134 1.34927 1.25889 0.94686 1.01131 0.92276 0.86454 0.80245 0.80607 0.79964 1.19039 1.20379 1.18825 1.19512 0.97470 0.90922 1.41023 0.90471 1.17198 0.90230 0.90807 0.87004 1.21146 1.00504 0.96551 1.03786 1.20426 0.97546 0.92897 0.98201 1.19799 1.03438 0.96743 1.12980 1.17291 0.92574 0.84668 0.92014 1.42481 1.36146 1.06106 1.58952 1.18957 1.03747 0.92471 1.12140 1.19764 0.89465 1.02015 0.95400 1.21650 0.88935 1.05374 0.98584 1.24221 0.84311 0.70972 0.88663 1.90683 1.86701 1.45994 1.17457 1.84615 1.17646 1.85407 1.45887 0.90933 0.86783 0.89656 0.89837 0.78710 0.79148 0.90537 0.93411 0.88620 0.87311 0.74208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.25 10.97 55.55 0.61 -19.64 16 2 C 0.08 1.94 5.16 -17.34 -0.09 1.85 16 3 Si 0.90 18.59 29.59 -169.99 -5.03 13.56 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 6 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.46 -11.72 8.11 -37.74 -0.31 -12.03 16 8 H 0.08 1.88 6.60 -52.49 -0.35 1.54 16 9 C 0.15 3.86 5.56 -106.85 -0.59 3.27 16 10 C -0.20 -5.12 8.68 -38.84 -0.34 -5.46 16 11 C -0.07 -1.68 10.01 -39.69 -0.40 -2.08 16 12 C -0.31 -6.81 9.90 -39.09 -0.39 -7.19 16 13 C 0.24 5.08 6.73 -83.86 -0.56 4.51 16 14 N -0.90 -15.22 8.99 32.37 0.29 -14.93 16 15 C -0.27 -6.15 5.21 -103.72 -0.54 -6.69 16 16 C -0.03 -0.58 3.59 -27.88 -0.10 -0.68 16 17 C -0.11 -1.84 5.78 -27.88 -0.16 -2.00 16 18 C 0.47 7.66 8.33 36.01 0.30 7.96 16 19 O -0.52 -9.84 16.74 -18.75 -0.31 -10.15 16 20 O -0.52 -6.71 13.42 -39.25 -0.53 -7.23 16 21 H 0.28 6.58 8.30 -40.82 -0.34 6.25 16 22 H 0.11 3.04 6.22 -52.49 -0.33 2.71 16 23 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 24 H 0.08 1.67 8.06 -52.48 -0.42 1.25 16 25 H 0.39 6.04 6.80 -40.82 -0.28 5.76 16 26 H 0.38 5.59 8.84 -40.82 -0.36 5.23 16 27 H 0.08 1.71 6.74 -51.93 -0.35 1.36 16 28 H 0.05 0.91 6.48 -51.93 -0.34 0.58 16 29 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 30 H 0.11 1.91 7.86 -51.93 -0.41 1.50 16 31 H 0.40 3.26 9.10 45.56 0.41 3.68 16 LS Contribution 269.28 15.07 4.06 4.06 Total: -1.00 -29.33 269.28 -6.48 -35.81 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -2.39 Total: 17.06 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: -3.18 Total: -18.53 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.90 Total: -34.57 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.84 Total: -17.38 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.33 -6.48 -35.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396121522.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.540 kcal (2) G-P(sol) polarization free energy of solvation -29.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds