Wall clock time and date at job start Mon Mar 30 2020 03:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86801 * 119.99552 * 2 1 4 4 H 1.48505 * 109.47103 * 89.99747 * 3 2 1 5 5 H 1.48496 * 109.47239 * 209.99541 * 3 2 1 6 6 H 1.48497 * 109.47174 * 329.99801 * 3 2 1 7 7 C 1.39858 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00134 * 17.29492 * 7 2 1 9 9 C 1.41141 * 119.99874 * 197.29464 * 7 2 1 10 10 C 1.40898 * 120.15631 * 29.37991 * 9 7 2 11 11 C 1.36320 * 119.83509 * 179.76307 * 10 9 7 12 12 C 1.39587 * 120.16236 * 0.49552 * 11 10 9 13 13 N 1.38856 * 119.84592 * 179.75977 * 12 11 10 14 14 C 1.39546 * 120.31619 * 359.77892 * 12 11 10 15 15 C 1.36356 * 120.15856 * 359.96018 * 14 12 11 16 16 C 1.50704 * 120.08402 * 179.97438 * 15 14 12 17 17 C 1.53002 * 109.47364 * 265.02398 * 16 15 14 18 18 C 1.50695 * 109.46974 * 179.97438 * 17 16 15 19 19 O 1.20825 * 120.00262 * 0.02562 * 18 17 16 20 20 O 1.34233 * 119.99799 * 179.97438 * 18 17 16 21 21 H 0.96999 * 119.99813 * 175.43186 * 1 2 3 22 22 H 1.07998 * 120.08248 * 0.03185 * 10 9 7 23 23 H 1.07999 * 119.92272 * 180.25406 * 11 10 9 24 24 H 0.96997 * 120.00214 * 180.02562 * 13 12 11 25 25 H 0.97002 * 120.00009 * 0.02562 * 13 12 11 26 26 H 1.07999 * 119.92034 * 179.97438 * 14 12 11 27 27 H 1.09007 * 109.46747 * 25.02247 * 16 15 14 28 28 H 1.09002 * 109.47327 * 145.01863 * 16 15 14 29 29 H 1.09003 * 109.46599 * 299.99501 * 17 16 15 30 30 H 1.08997 * 109.46897 * 59.99573 * 17 16 15 31 31 H 0.96701 * 117.00090 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.4904 2.0466 1.4001 5 1 3.5405 1.4404 -0.6999 6 1 1.4403 2.6527 -0.7001 7 6 2.0084 -1.2112 0.0005 8 1 1.5051 -2.1255 -0.2771 9 6 3.3720 -1.2386 0.3639 10 6 3.8810 -0.2912 1.2742 11 6 5.1980 -0.3267 1.6243 12 6 6.0439 -1.2920 1.0755 13 7 7.3854 -1.3190 1.4330 14 6 5.5479 -2.2298 0.1690 15 6 4.2316 -2.2095 -0.1863 16 6 3.6979 -3.2228 -1.1659 17 6 3.7103 -2.6260 -2.5747 18 6 3.1771 -3.6394 -3.5542 19 8 2.8231 -4.7273 -3.1655 20 8 3.0946 -3.3332 -4.8586 21 1 -0.4850 -0.8374 -0.0669 22 1 3.2286 0.4585 1.6968 23 1 5.5888 0.3962 2.3251 24 1 7.9753 -1.9885 1.0527 25 1 7.7327 -0.6682 2.0630 26 1 6.2082 -2.9735 -0.2521 27 1 4.3242 -4.1146 -1.1436 28 1 2.6767 -3.4891 -0.8931 29 1 3.0839 -1.7342 -2.5969 30 1 4.7314 -2.3597 -2.8474 31 1 2.7459 -4.0155 -5.4485 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396122598.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:33 Heat of formation + Delta-G solvation = -90.252144 kcal Electronic energy + Delta-G solvation = -16244.261315 eV Core-core repulsion = 13489.342203 eV Total energy + Delta-G solvation = -2754.919111 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.92439 -38.37300 -35.91834 -34.69876 -33.34272 -32.19421 -29.34627 -28.62617 -24.95569 -23.47440 -21.52964 -20.74111 -19.38297 -18.05961 -17.78791 -16.28470 -16.13085 -15.65970 -15.41726 -14.32383 -14.02056 -13.96925 -13.13408 -12.77970 -12.56201 -12.34039 -11.92675 -11.86447 -11.40660 -11.26979 -11.00719 -10.65520 -10.39443 -10.29867 -10.18278 -9.79045 -9.37080 -9.16896 -8.72085 -7.71968 -7.22450 -6.64193 -4.23765 2.54631 2.56474 2.82725 3.26288 3.39483 3.46514 3.59082 4.11953 4.64513 4.80888 5.34665 5.51148 5.62711 5.81373 5.97893 6.04352 6.20674 6.33030 6.55202 6.64030 6.72012 6.84832 6.94411 7.22013 7.36495 7.47920 7.69779 7.87803 7.97887 8.19567 8.32726 8.54863 8.61508 8.71980 8.95181 10.20009 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.016342 B = 0.011257 C = 0.007448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.943010 B = 2486.780261 C = 3758.384391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.040 3.960 3 Si 1.072 2.928 4 H -0.280 1.280 5 H -0.264 1.264 6 H -0.294 1.294 7 C -0.523 4.523 8 H 0.076 0.924 9 C 0.072 3.928 10 C -0.203 4.203 11 C -0.143 4.143 12 C 0.091 3.909 13 N -0.896 5.896 14 C -0.140 4.140 15 C -0.150 4.150 16 C -0.038 4.038 17 C -0.105 4.105 18 C 0.479 3.521 19 O -0.523 6.523 20 O -0.522 6.522 21 H 0.283 0.717 22 H 0.106 0.894 23 H 0.093 0.907 24 H 0.383 0.617 25 H 0.383 0.617 26 H 0.093 0.907 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.116 0.884 30 H 0.098 0.902 31 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.529 -1.650 -4.079 9.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.177 4.177 3 Si 0.899 3.101 4 H -0.208 1.208 5 H -0.188 1.188 6 H -0.221 1.221 7 C -0.553 4.553 8 H 0.094 0.906 9 C 0.068 3.932 10 C -0.222 4.222 11 C -0.165 4.165 12 C -0.008 4.008 13 N -0.439 5.439 14 C -0.162 4.162 15 C -0.152 4.152 16 C -0.075 4.075 17 C -0.142 4.142 18 C 0.322 3.678 19 O -0.412 6.412 20 O -0.333 6.333 21 H 0.094 0.906 22 H 0.124 0.876 23 H 0.111 0.889 24 H 0.209 0.791 25 H 0.209 0.791 26 H 0.111 0.889 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.134 0.866 30 H 0.116 0.884 31 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 8.168 -0.040 -3.694 8.964 hybrid contribution 0.188 -2.209 -0.251 2.231 sum 8.356 -2.249 -3.945 9.510 Atomic orbital electron populations 1.70566 1.07980 1.32683 1.34497 1.27090 0.95692 1.04114 0.90797 0.83604 0.75481 0.73438 0.77529 1.20773 1.18829 1.22138 1.20412 0.94880 0.96412 1.43570 0.90590 1.17499 0.93259 0.91407 0.91028 1.20743 0.95025 1.03787 1.02672 1.19945 0.94177 0.99455 1.02939 1.17304 0.84427 0.98500 1.00543 1.41826 1.07617 1.39687 1.54762 1.19819 0.95315 0.99755 1.01333 1.19124 0.92572 1.01648 1.01850 1.19972 1.02061 0.95545 0.89950 1.21453 1.03023 0.97687 0.92060 1.24086 0.74130 0.88128 0.81427 1.90673 1.46185 1.25116 1.79214 1.84607 1.78769 1.49674 1.20300 0.90620 0.87608 0.88885 0.79135 0.79095 0.88900 0.92719 0.90740 0.86627 0.88396 0.74123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.66 13.66 55.54 0.76 -21.90 16 2 C 0.04 1.05 5.42 -17.34 -0.09 0.96 16 3 Si 1.07 24.34 24.89 -169.99 -4.23 20.10 16 4 H -0.28 -6.11 6.44 56.52 0.36 -5.75 16 5 H -0.26 -5.86 7.02 56.52 0.40 -5.47 16 6 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -13.62 8.60 -37.87 -0.33 -13.95 16 8 H 0.08 2.07 6.60 -52.48 -0.35 1.73 16 9 C 0.07 1.75 5.13 -106.79 -0.55 1.21 16 10 C -0.20 -4.78 7.20 -39.27 -0.28 -5.06 16 11 C -0.14 -3.01 9.82 -39.77 -0.39 -3.40 16 12 C 0.09 1.80 6.77 -83.69 -0.57 1.23 16 13 N -0.90 -13.65 9.05 32.51 0.29 -13.35 16 14 C -0.14 -2.82 9.44 -39.77 -0.38 -3.20 16 15 C -0.15 -3.30 5.16 -104.30 -0.54 -3.83 16 16 C -0.04 -0.75 4.15 -27.88 -0.12 -0.87 16 17 C -0.10 -1.84 5.79 -27.88 -0.16 -2.00 16 18 C 0.48 8.03 8.33 36.00 0.30 8.33 16 19 O -0.52 -10.17 16.74 -18.75 -0.31 -10.48 16 20 O -0.52 -7.03 13.42 -39.27 -0.53 -7.56 16 21 H 0.28 7.56 8.73 -40.82 -0.36 7.20 16 22 H 0.11 2.51 4.43 -52.49 -0.23 2.28 16 23 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 24 H 0.38 5.01 8.83 -40.82 -0.36 4.64 16 25 H 0.38 5.05 8.83 -40.82 -0.36 4.69 16 26 H 0.09 1.65 8.05 -52.49 -0.42 1.23 16 27 H 0.05 1.02 8.00 -51.93 -0.42 0.61 16 28 H 0.07 1.64 6.47 -51.93 -0.34 1.31 16 29 H 0.12 2.18 7.96 -51.93 -0.41 1.77 16 30 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.40 3.50 9.10 45.56 0.41 3.91 16 LS Contribution 267.34 15.07 4.03 4.03 Total: -1.00 -29.74 267.34 -5.60 -35.34 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -2.51 Total: 14.41 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -3.10 Total: -20.59 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 1.05 Total: -35.25 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.84 Total: -18.04 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -4.23 Total: 20.10 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.74 -5.60 -35.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396122598.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.911 kcal (2) G-P(sol) polarization free energy of solvation -29.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds