Wall clock time and date at job start Mon Mar 30 2020 03:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86801 * 119.99552 * 2 1 4 4 H 1.48505 * 109.47103 * 89.99747 * 3 2 1 5 5 H 1.48496 * 109.47239 * 209.99541 * 3 2 1 6 6 H 1.48497 * 109.47174 * 329.99801 * 3 2 1 7 7 C 1.39858 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00134 * 17.29492 * 7 2 1 9 9 C 1.41141 * 119.99874 * 197.29464 * 7 2 1 10 10 C 1.40898 * 120.15631 * 29.37991 * 9 7 2 11 11 C 1.36320 * 119.83509 * 179.76307 * 10 9 7 12 12 C 1.39587 * 120.16236 * 0.49552 * 11 10 9 13 13 N 1.38856 * 119.84592 * 179.75977 * 12 11 10 14 14 C 1.39546 * 120.31619 * 359.77892 * 12 11 10 15 15 C 1.36356 * 120.15856 * 359.96018 * 14 12 11 16 16 C 1.50704 * 120.08402 * 179.97438 * 15 14 12 17 17 C 1.53002 * 109.47364 * 265.02398 * 16 15 14 18 18 C 1.50695 * 109.46974 * 179.97438 * 17 16 15 19 19 O 1.20825 * 120.00262 * 0.02562 * 18 17 16 20 20 O 1.34233 * 119.99799 * 179.97438 * 18 17 16 21 21 H 0.96999 * 119.99813 * 175.43186 * 1 2 3 22 22 H 1.07998 * 120.08248 * 0.03185 * 10 9 7 23 23 H 1.07999 * 119.92272 * 180.25406 * 11 10 9 24 24 H 0.96997 * 120.00214 * 180.02562 * 13 12 11 25 25 H 0.97002 * 120.00009 * 0.02562 * 13 12 11 26 26 H 1.07999 * 119.92034 * 179.97438 * 14 12 11 27 27 H 1.09007 * 109.46747 * 25.02247 * 16 15 14 28 28 H 1.09002 * 109.47327 * 145.01863 * 16 15 14 29 29 H 1.09003 * 109.46599 * 299.99501 * 17 16 15 30 30 H 1.08997 * 109.46897 * 59.99573 * 17 16 15 31 31 H 0.96701 * 117.00090 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.4904 2.0466 1.4001 5 1 3.5405 1.4404 -0.6999 6 1 1.4403 2.6527 -0.7001 7 6 2.0084 -1.2112 0.0005 8 1 1.5051 -2.1255 -0.2771 9 6 3.3720 -1.2386 0.3639 10 6 3.8810 -0.2912 1.2742 11 6 5.1980 -0.3267 1.6243 12 6 6.0439 -1.2920 1.0755 13 7 7.3854 -1.3190 1.4330 14 6 5.5479 -2.2298 0.1690 15 6 4.2316 -2.2095 -0.1863 16 6 3.6979 -3.2228 -1.1659 17 6 3.7103 -2.6260 -2.5747 18 6 3.1771 -3.6394 -3.5542 19 8 2.8231 -4.7273 -3.1655 20 8 3.0946 -3.3332 -4.8586 21 1 -0.4850 -0.8374 -0.0669 22 1 3.2286 0.4585 1.6968 23 1 5.5888 0.3962 2.3251 24 1 7.9753 -1.9885 1.0527 25 1 7.7327 -0.6682 2.0630 26 1 6.2082 -2.9735 -0.2521 27 1 4.3242 -4.1146 -1.1436 28 1 2.6767 -3.4891 -0.8931 29 1 3.0839 -1.7342 -2.5969 30 1 4.7314 -2.3597 -2.8474 31 1 2.7459 -4.0155 -5.4485 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396122598.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:32 Heat of formation + Delta-G solvation = -111.647477 kcal Electronic energy + Delta-G solvation = -16245.189086 eV Core-core repulsion = 13489.342203 eV Total energy + Delta-G solvation = -2755.846883 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.27482 -40.04329 -37.18740 -36.32530 -35.08152 -33.83487 -30.94214 -30.31464 -26.53193 -25.19884 -23.21108 -22.20838 -21.00404 -19.90953 -19.09462 -17.73797 -17.58000 -17.05659 -16.88511 -16.01512 -15.76805 -15.61205 -14.59104 -14.34815 -14.25944 -13.91580 -13.60812 -13.47270 -12.94127 -12.73956 -12.55617 -12.39159 -12.04379 -11.93561 -11.63999 -11.58189 -11.06046 -10.97646 -10.52349 -9.40460 -9.17070 -8.30770 -6.14870 0.86219 1.06493 1.20966 1.43812 1.61355 1.80891 2.21472 2.30006 2.81146 3.47264 3.58548 4.08405 4.13421 4.25368 4.41186 4.53750 4.71817 4.78121 4.97743 5.04085 5.19504 5.24073 5.53920 5.62199 5.65351 5.72181 5.78130 6.06460 6.25001 6.55982 6.72157 7.01266 7.02025 7.14517 7.40414 8.22731 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.016342 B = 0.011257 C = 0.007448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.943010 B = 2486.780261 C = 3758.384391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.003 3.997 3 Si 1.104 2.896 4 H -0.267 1.267 5 H -0.255 1.255 6 H -0.291 1.291 7 C -0.540 4.540 8 H 0.043 0.957 9 C 0.036 3.964 10 C -0.209 4.209 11 C -0.162 4.162 12 C 0.122 3.878 13 N -0.877 5.877 14 C -0.152 4.152 15 C -0.142 4.142 16 C -0.034 4.034 17 C -0.101 4.101 18 C 0.489 3.511 19 O -0.554 6.554 20 O -0.511 6.511 21 H 0.269 0.731 22 H 0.099 0.901 23 H 0.121 0.879 24 H 0.399 0.601 25 H 0.398 0.602 26 H 0.125 0.875 27 H 0.070 0.930 28 H 0.041 0.959 29 H 0.098 0.902 30 H 0.126 0.874 31 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.240 -1.468 -4.272 13.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.207 4.207 3 Si 0.927 3.073 4 H -0.193 1.193 5 H -0.179 1.179 6 H -0.219 1.219 7 C -0.572 4.572 8 H 0.061 0.939 9 C 0.032 3.968 10 C -0.228 4.228 11 C -0.184 4.184 12 C 0.020 3.980 13 N -0.420 5.420 14 C -0.175 4.175 15 C -0.144 4.144 16 C -0.072 4.072 17 C -0.138 4.138 18 C 0.334 3.666 19 O -0.446 6.446 20 O -0.324 6.324 21 H 0.080 0.920 22 H 0.116 0.884 23 H 0.139 0.861 24 H 0.227 0.773 25 H 0.227 0.773 26 H 0.143 0.857 27 H 0.089 0.911 28 H 0.059 0.941 29 H 0.116 0.884 30 H 0.144 0.856 31 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 11.936 0.129 -3.896 12.557 hybrid contribution -0.656 -2.415 -0.186 2.509 sum 11.281 -2.286 -4.082 12.212 Atomic orbital electron populations 1.70657 1.08705 1.31735 1.38822 1.28074 0.95749 1.06594 0.90259 0.83207 0.74875 0.70868 0.78323 1.19315 1.17949 1.21903 1.20274 0.96124 0.95314 1.45443 0.93883 1.17629 0.92956 0.93457 0.92723 1.20838 0.96274 1.03303 1.02433 1.20214 0.93420 1.00832 1.03944 1.17504 0.85993 0.96484 0.98033 1.41794 1.05910 1.40118 1.54196 1.20119 0.94901 1.00790 1.01661 1.19407 0.93303 1.00497 1.01202 1.19891 1.00286 0.95848 0.91163 1.21306 1.04409 0.96950 0.91166 1.23763 0.73384 0.87179 0.82305 1.90672 1.47602 1.26325 1.79973 1.84530 1.78312 1.50503 1.19074 0.92047 0.88367 0.86084 0.77262 0.77346 0.85724 0.91147 0.94052 0.88386 0.85577 0.71360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -50.30 13.66 21.81 0.30 -50.00 16 2 C 0.00 0.15 5.42 85.22 0.46 0.61 16 3 Si 1.10 49.80 24.89 68.60 1.71 51.51 16 4 H -0.27 -11.29 6.44 99.48 0.64 -10.65 16 5 H -0.26 -10.98 7.02 99.48 0.70 -10.29 16 6 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 7 C -0.54 -29.61 8.60 23.38 0.20 -29.41 16 8 H 0.04 2.56 6.60 -2.91 -0.02 2.54 16 9 C 0.04 1.76 5.13 -21.27 -0.11 1.65 16 10 C -0.21 -9.61 7.20 22.47 0.16 -9.45 16 11 C -0.16 -6.27 9.82 22.15 0.22 -6.05 16 12 C 0.12 4.25 6.77 38.67 0.26 4.52 16 13 N -0.88 -21.73 9.05 -51.07 -0.46 -22.19 16 14 C -0.15 -5.57 9.44 22.15 0.21 -5.36 16 15 C -0.14 -6.08 5.16 -19.66 -0.10 -6.19 16 16 C -0.03 -1.36 4.15 29.85 0.12 -1.24 16 17 C -0.10 -3.46 5.79 29.85 0.17 -3.28 16 18 C 0.49 15.90 8.33 71.23 0.59 16.50 16 19 O -0.55 -21.34 16.74 21.97 0.37 -20.97 16 20 O -0.51 -12.69 13.42 -51.45 -0.69 -13.38 16 21 H 0.27 15.61 8.73 -92.71 -0.81 14.80 16 22 H 0.10 4.61 4.43 -2.91 -0.01 4.59 16 23 H 0.12 3.97 8.06 -2.91 -0.02 3.95 16 24 H 0.40 8.01 8.83 -92.71 -0.82 7.19 16 25 H 0.40 8.19 8.83 -92.71 -0.82 7.37 16 26 H 0.12 3.78 8.05 -2.91 -0.02 3.76 16 27 H 0.07 2.53 8.00 -2.38 -0.02 2.51 16 28 H 0.04 1.91 6.47 -2.39 -0.02 1.89 16 29 H 0.10 3.76 7.96 -2.39 -0.02 3.74 16 30 H 0.13 3.56 8.14 -2.39 -0.02 3.55 16 31 H 0.43 6.38 9.10 -74.06 -0.67 5.70 16 Total: -1.00 -66.41 267.34 2.19 -64.22 By element: Atomic # 1 Polarization: 29.74 SS G_CDS: -1.23 Total: 28.51 kcal Atomic # 6 Polarization: -39.90 SS G_CDS: 2.19 Total: -37.71 kcal Atomic # 7 Polarization: -72.02 SS G_CDS: -0.16 Total: -72.19 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -0.32 Total: -34.35 kcal Atomic # 14 Polarization: 49.80 SS G_CDS: 1.71 Total: 51.51 kcal Total: -66.41 2.19 -64.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396122598.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.426 kcal (2) G-P(sol) polarization free energy of solvation -66.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds