Wall clock time and date at job start Mon Mar 30 2020 03:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86803 * 119.99734 * 2 1 4 4 H 1.48508 * 109.47065 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46971 * 299.99889 * 3 2 1 6 6 H 1.48496 * 109.47377 * 59.99971 * 3 2 1 7 7 C 1.37878 * 120.00307 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99766 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99859 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47111 * 179.97438 * 9 7 2 11 11 C 1.38311 * 119.96293 * 270.01923 * 10 9 7 12 12 C 1.38258 * 120.14972 * 179.72204 * 11 10 9 13 13 C 1.38129 * 120.07744 * 0.51067 * 12 11 10 14 14 C 1.50699 * 120.04024 * 179.76825 * 13 12 11 15 15 C 1.50706 * 109.46817 * 264.72378 * 14 13 12 16 16 O 1.20818 * 120.00197 * 359.72380 * 15 14 13 17 17 O 1.34230 * 119.99763 * 179.97438 * 15 14 13 18 18 C 1.38892 * 119.91965 * 359.49232 * 13 12 11 19 19 N 1.39677 * 120.07405 * 180.27612 * 18 13 12 20 20 C 1.38087 * 119.96515 * 89.99789 * 10 9 7 21 21 H 0.97002 * 120.00669 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47174 * 59.99689 * 9 7 2 23 23 H 1.08996 * 109.47206 * 299.99569 * 9 7 2 24 24 H 1.08001 * 119.92198 * 0.02562 * 11 10 9 25 25 H 1.08008 * 119.96372 * 180.27380 * 12 11 10 26 26 H 1.09000 * 109.47247 * 144.72441 * 14 13 12 27 27 H 1.09001 * 109.47358 * 24.71867 * 14 13 12 28 28 H 0.96692 * 116.99954 * 180.02562 * 17 15 14 29 29 H 0.97009 * 119.99438 * 359.97438 * 19 18 13 30 30 H 0.96990 * 120.00159 * 180.02562 * 19 18 13 31 31 H 1.08001 * 120.03406 * 0.04170 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2126 6 1 1.8902 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0005 11 6 2.6796 -4.1693 -1.1977 12 6 3.5825 -5.2163 -1.2022 13 6 4.0309 -5.7489 -0.0092 14 6 5.0110 -6.8936 -0.0152 15 6 4.2628 -8.1961 0.1068 16 8 3.0579 -8.1947 0.1949 17 8 4.9355 -9.3576 0.1224 18 6 3.5818 -5.2243 1.1959 19 7 4.0376 -5.7566 2.4041 20 6 2.6786 -4.1687 1.1968 21 1 -0.4851 0.8400 0.0004 22 1 0.6247 -2.5570 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 2.3280 -3.7569 -2.1319 25 1 3.9347 -5.6209 -2.1397 26 1 5.6973 -6.7887 0.8252 27 1 5.5748 -6.8844 -0.9480 28 1 4.4123 -10.1668 0.2018 29 1 4.6683 -6.4937 2.4021 30 1 3.7230 -5.3897 3.2450 31 1 2.3272 -3.7587 2.1321 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396125709.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:26 Heat of formation + Delta-G solvation = -81.744768 kcal Electronic energy + Delta-G solvation = -15841.970085 eV Core-core repulsion = 13087.419881 eV Total energy + Delta-G solvation = -2754.550204 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.35981 -38.79557 -36.09863 -34.67228 -33.15824 -32.21529 -29.42154 -28.20765 -26.03339 -23.25704 -21.79233 -21.50548 -19.72731 -18.08291 -16.81157 -16.50853 -16.31476 -15.90520 -15.53703 -14.87775 -14.41516 -13.80261 -13.27591 -13.09863 -12.59317 -12.44433 -12.34282 -11.84567 -11.50700 -11.19534 -11.14544 -10.73435 -10.53063 -10.49151 -10.31824 -10.06816 -9.46594 -9.31281 -8.39461 -7.82242 -6.97661 -6.00893 -4.04269 2.02878 2.24652 2.32308 3.17803 3.31361 3.38893 3.44168 4.19838 4.43029 4.66306 4.86549 5.03137 5.33770 5.39171 5.49848 5.61587 6.01282 6.21123 6.28670 6.42987 6.47061 6.77698 6.91637 7.18698 7.29155 7.49638 7.61649 7.90885 7.93201 7.95698 8.00939 8.06134 8.36366 9.01396 9.59111 11.09190 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.050273 B = 0.005203 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.819829 B = 5380.613311 C = 5438.593087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.508 4.508 8 H 0.058 0.942 9 C 0.045 3.955 10 C 0.018 3.982 11 C -0.175 4.175 12 C -0.062 4.062 13 C -0.194 4.194 14 C -0.052 4.052 15 C 0.467 3.533 16 O -0.496 6.496 17 O -0.526 6.526 18 C 0.230 3.770 19 N -0.883 5.883 20 C -0.197 4.197 21 H 0.261 0.739 22 H 0.030 0.970 23 H 0.028 0.972 24 H 0.116 0.884 25 H 0.110 0.890 26 H 0.100 0.900 27 H 0.109 0.891 28 H 0.405 0.595 29 H 0.386 0.614 30 H 0.396 0.604 31 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.392 -14.798 1.506 18.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.546 4.546 8 H 0.077 0.923 9 C 0.008 3.992 10 C 0.017 3.983 11 C -0.195 4.195 12 C -0.081 4.081 13 C -0.198 4.198 14 C -0.090 4.090 15 C 0.308 3.692 16 O -0.382 6.382 17 O -0.339 6.339 18 C 0.127 3.873 19 N -0.423 5.423 20 C -0.219 4.219 21 H 0.071 0.929 22 H 0.049 0.951 23 H 0.047 0.953 24 H 0.134 0.866 25 H 0.128 0.872 26 H 0.118 0.882 27 H 0.127 0.873 28 H 0.263 0.737 29 H 0.214 0.786 30 H 0.224 0.776 31 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 10.107 -14.283 1.448 17.557 hybrid contribution 0.178 0.240 0.400 0.499 sum 10.284 -14.042 1.848 17.503 Atomic orbital electron populations 1.69968 1.06037 1.26645 1.50742 1.25011 0.94865 0.99226 0.95288 0.86487 0.80151 0.83539 0.77580 1.19659 1.20958 1.21009 1.21085 0.93109 0.89760 1.50646 0.92342 1.18400 0.92695 0.89702 0.98428 1.20463 0.93427 0.92970 0.91393 1.20824 1.01393 0.99034 0.98263 1.20604 0.96051 0.95770 0.95676 1.18363 1.07034 1.01666 0.92780 1.19966 0.97190 0.86480 1.05350 1.23906 0.87175 0.85647 0.72462 1.90762 1.15902 1.87559 1.43931 1.84555 1.45948 1.17483 1.85876 1.17485 0.92357 0.92221 0.85244 1.42412 1.53210 1.41221 1.05506 1.20474 1.03027 0.99471 0.98948 0.92938 0.95149 0.95332 0.86562 0.87209 0.88227 0.87317 0.73691 0.78618 0.77620 0.86526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.28 55.43 0.74 -25.96 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 7 C -0.51 -14.38 9.09 -34.44 -0.31 -14.70 16 8 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 9 C 0.04 1.18 5.10 -29.04 -0.15 1.03 16 10 C 0.02 0.41 5.07 -104.65 -0.53 -0.12 16 11 C -0.18 -3.57 9.70 -39.55 -0.38 -3.96 16 12 C -0.06 -1.08 9.67 -39.61 -0.38 -1.46 16 13 C -0.19 -3.12 4.39 -104.42 -0.46 -3.58 16 14 C -0.05 -0.61 5.38 -29.03 -0.16 -0.76 16 15 C 0.47 5.82 8.32 36.01 0.30 6.12 16 16 O -0.50 -8.26 16.79 -18.74 -0.31 -8.58 16 17 O -0.53 -4.78 13.42 -39.26 -0.53 -5.31 16 18 C 0.23 3.96 6.73 -83.79 -0.56 3.39 16 19 N -0.88 -11.54 8.99 32.41 0.29 -11.25 16 20 C -0.20 -4.01 9.55 -39.38 -0.38 -4.38 16 21 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 22 H 0.03 0.84 8.08 -51.93 -0.42 0.42 16 23 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 24 H 0.12 2.31 8.06 -52.49 -0.42 1.88 16 25 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 26 H 0.10 0.94 6.82 -51.93 -0.35 0.59 16 27 H 0.11 1.04 8.05 -51.93 -0.42 0.62 16 28 H 0.40 2.11 9.10 45.56 0.41 2.53 16 29 H 0.39 4.14 6.94 -40.82 -0.28 3.86 16 30 H 0.40 4.61 8.84 -40.82 -0.36 4.25 16 31 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 277.96 15.07 4.19 4.19 Total: -1.00 -33.82 277.96 -6.41 -40.22 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -2.65 Total: 6.95 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -3.11 Total: -16.89 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 1.03 Total: -37.21 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.84 Total: -13.89 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -33.82 -6.41 -40.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396125709.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.521 kcal (2) G-P(sol) polarization free energy of solvation -33.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds