Wall clock time and date at job start Mon Mar 30 2020 03:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99999 * 2 1 4 4 H 1.48494 * 109.47295 * 89.99554 * 3 2 1 5 5 H 1.48497 * 109.46962 * 329.99516 * 3 2 1 6 6 H 1.48504 * 109.47117 * 209.99688 * 3 2 1 7 7 C 1.37875 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99861 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00061 * 0.02562 * 7 2 1 10 10 H 1.08992 * 110.64296 * 300.70270 * 9 7 2 11 11 C 1.55163 * 110.72082 * 177.55580 * 9 7 2 12 12 C 1.54901 * 101.58349 * 206.13739 * 11 9 7 13 13 N 1.47425 * 104.83244 * 37.00943 * 12 11 9 14 14 C 1.34778 * 125.64961 * 155.83629 * 13 12 11 15 15 O 1.21616 * 119.99661 * 354.90771 * 14 13 12 16 16 C 1.47375 * 120.00467 * 174.91066 * 14 13 12 17 17 C 1.47021 * 127.19829 * 185.64851 * 16 14 13 18 18 C 1.34173 * 105.95570 * 179.97438 * 17 16 14 19 19 O 1.34213 * 109.12772 * 0.02562 * 18 17 16 20 20 C 1.33654 * 110.90289 * 359.71948 * 19 18 17 21 21 C 1.47320 * 108.73835 * 335.71595 * 13 12 11 22 22 H 0.96998 * 120.00119 * 180.02562 * 1 2 3 23 23 H 1.08998 * 111.00264 * 324.21703 * 11 9 7 24 24 H 1.09004 * 111.00047 * 88.06134 * 11 9 7 25 25 H 1.08999 * 110.36840 * 155.85129 * 12 11 9 26 26 H 1.09004 * 110.36827 * 278.06419 * 12 11 9 27 27 H 1.07999 * 127.01500 * 359.97438 * 17 16 14 28 28 H 1.08001 * 125.43770 * 180.02562 * 18 17 16 29 29 H 1.08005 * 125.79961 * 180.28523 * 20 19 18 30 30 H 1.08996 * 110.06220 * 241.87176 * 21 13 12 31 31 H 1.08995 * 109.85001 * 120.60663 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4000 5 1 1.4467 2.6526 -0.7001 6 1 3.5468 1.4401 -0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6076 -2.5713 0.8773 11 6 2.2322 -3.6996 -0.0607 12 6 1.3504 -4.7888 -0.7205 13 7 0.5324 -4.0639 -1.7099 14 6 -0.0292 -4.6022 -2.8105 15 8 0.1974 -5.7604 -3.1042 16 6 -0.9177 -3.7873 -3.6582 17 6 -1.6992 -4.2391 -4.8187 18 6 -2.3516 -3.1562 -5.2681 19 8 -2.0402 -2.1033 -4.4963 20 6 -1.1912 -2.4574 -3.5266 21 6 0.4275 -2.6541 -1.2954 22 1 -0.4850 -0.8400 0.0004 23 1 3.0963 -3.4665 -0.6829 24 1 2.5431 -4.0015 0.9395 25 1 1.9738 -5.5330 -1.2160 26 1 0.7134 -5.2644 0.0253 27 1 -1.7398 -5.2385 -5.2260 28 1 -3.0205 -3.1351 -6.1158 29 1 -0.7882 -1.8014 -2.7691 30 1 -0.6145 -2.3967 -1.1054 31 1 0.8352 -2.0084 -2.0731 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397624361.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:19 Heat of formation + Delta-G solvation = -20.526051 kcal Electronic energy + Delta-G solvation = -16574.830483 eV Core-core repulsion = 13822.934922 eV Total energy + Delta-G solvation = -2751.895561 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.31111 -39.29456 -36.87834 -33.29689 -32.70428 -30.99764 -29.40500 -27.86762 -25.22044 -23.68426 -21.47625 -21.24899 -20.20763 -19.39569 -17.22573 -16.95569 -16.15056 -15.89148 -15.51390 -14.91045 -13.97220 -13.85279 -13.63013 -13.10004 -12.82493 -12.60244 -12.17875 -12.15407 -11.88859 -11.37694 -10.90272 -10.80493 -10.21988 -10.16595 -9.77260 -9.62469 -9.60919 -8.76332 -8.60667 -8.58493 -8.10597 -6.55258 -4.30507 1.65523 2.23987 3.12920 3.34633 3.37179 3.51529 3.53069 3.72002 4.37874 4.84963 4.90289 5.11961 5.19867 5.46236 5.62938 5.70484 5.72229 5.81822 6.03155 6.03864 6.19203 6.36290 6.43695 6.52880 6.60187 6.74509 6.89571 7.16806 7.30223 7.93348 8.03408 8.23857 8.59020 8.65682 9.40484 10.81449 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.023953 B = 0.008778 C = 0.006721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.671745 B = 3188.852698 C = 4164.982918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.021 3.979 3 Si 1.070 2.930 4 H -0.286 1.286 5 H -0.283 1.283 6 H -0.288 1.288 7 C -0.593 4.593 8 H 0.056 0.944 9 C 0.027 3.973 10 H 0.036 0.964 11 C -0.121 4.121 12 C 0.107 3.893 13 N -0.610 5.610 14 C 0.596 3.404 15 O -0.560 6.560 16 C -0.238 4.238 17 C -0.167 4.167 18 C -0.052 4.052 19 O -0.176 6.176 20 C 0.023 3.977 21 C 0.091 3.909 22 H 0.269 0.731 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.156 0.844 28 H 0.205 0.795 29 H 0.228 0.772 30 H 0.058 0.942 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.423 -3.818 -5.719 7.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.183 4.183 3 Si 0.898 3.102 4 H -0.213 1.213 5 H -0.209 1.209 6 H -0.214 1.214 7 C -0.631 4.631 8 H 0.075 0.925 9 C 0.008 3.992 10 H 0.054 0.946 11 C -0.159 4.159 12 C -0.015 4.015 13 N -0.342 5.342 14 C 0.386 3.614 15 O -0.441 6.441 16 C -0.242 4.242 17 C -0.187 4.187 18 C -0.118 4.118 19 O -0.070 6.070 20 C -0.047 4.047 21 C -0.031 4.031 22 H 0.080 0.920 23 H 0.087 0.913 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.173 0.827 28 H 0.222 0.778 29 H 0.244 0.756 30 H 0.076 0.924 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.653 -2.525 -5.984 7.015 hybrid contribution 0.179 -1.844 0.021 1.853 sum -2.473 -4.369 -5.963 7.794 Atomic orbital electron populations 1.70860 1.06789 1.30674 1.46099 1.25896 0.96495 1.02804 0.93139 0.83503 0.74769 0.74951 0.76986 1.21294 1.20853 1.21367 1.21953 0.94447 0.90562 1.56125 0.92523 1.19897 0.93219 0.94475 0.91580 0.94620 1.22777 0.98283 0.95136 0.99685 1.22231 0.93325 0.95489 0.90441 1.48668 1.50472 1.12202 1.22905 1.16931 0.79265 0.85824 0.79376 1.90708 1.63420 1.17743 1.72213 1.21493 1.06496 0.94456 1.01798 1.22708 0.99151 1.00202 0.96615 1.23880 1.04319 0.84763 0.98842 1.83845 1.50938 1.37452 1.34813 1.25755 0.91206 0.96217 0.91541 1.23149 1.00251 0.79204 1.00462 0.91958 0.91278 0.91176 0.91303 0.92176 0.82653 0.77832 0.75629 0.92403 0.91062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.42 13.45 55.43 0.75 -23.67 16 2 C 0.02 0.55 5.34 -17.82 -0.10 0.45 16 3 Si 1.07 23.21 29.90 -169.99 -5.08 18.13 16 4 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.29 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.59 -14.96 8.38 -34.44 -0.29 -15.25 16 8 H 0.06 1.44 7.77 -52.49 -0.41 1.03 16 9 C 0.03 0.62 2.46 -89.93 -0.22 0.40 16 10 H 0.04 0.85 8.00 -51.93 -0.42 0.43 16 11 C -0.12 -2.32 6.50 -24.58 -0.16 -2.48 16 12 C 0.11 2.00 6.93 -2.53 -0.02 1.98 16 13 N -0.61 -12.38 3.33 -171.57 -0.57 -12.95 16 14 C 0.60 12.42 7.84 -12.54 -0.10 12.32 16 15 O -0.56 -12.85 17.22 5.26 0.09 -12.76 16 16 C -0.24 -4.40 6.28 -103.28 -0.65 -5.05 16 17 C -0.17 -2.57 11.02 -37.46 -0.41 -2.98 16 18 C -0.05 -0.68 12.03 29.30 0.35 -0.33 16 19 O -0.18 -2.75 10.52 7.65 0.08 -2.67 16 20 C 0.02 0.39 10.64 30.08 0.32 0.71 16 21 C 0.09 1.92 3.62 -2.90 -0.01 1.91 16 22 H 0.27 7.05 5.63 -40.82 -0.23 6.82 16 23 H 0.07 1.36 8.03 -51.93 -0.42 0.94 16 24 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 25 H 0.07 1.24 7.99 -51.93 -0.41 0.83 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.16 2.15 8.06 -52.49 -0.42 1.73 16 28 H 0.21 1.66 8.06 -52.49 -0.42 1.24 16 29 H 0.23 4.05 4.48 -52.48 -0.24 3.82 16 30 H 0.06 1.21 5.80 -51.93 -0.30 0.91 16 31 H 0.07 1.57 6.70 -51.93 -0.35 1.22 16 LS Contribution 263.60 15.07 3.97 3.97 Total: -1.00 -29.59 263.60 -5.30 -34.90 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -3.26 Total: 3.36 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -1.28 Total: -8.30 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.17 Total: -36.62 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: 0.17 Total: -15.43 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.08 Total: 18.13 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.59 -5.30 -34.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397624361.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.370 kcal (2) G-P(sol) polarization free energy of solvation -29.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds