Wall clock time and date at job start Mon Mar 30 2020 03:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99999 * 2 1 4 4 H 1.48494 * 109.47295 * 89.99554 * 3 2 1 5 5 H 1.48497 * 109.46962 * 329.99516 * 3 2 1 6 6 H 1.48504 * 109.47117 * 209.99688 * 3 2 1 7 7 C 1.37875 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99861 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00061 * 0.02562 * 7 2 1 10 10 H 1.08992 * 110.64296 * 300.70270 * 9 7 2 11 11 C 1.55163 * 110.72082 * 177.55580 * 9 7 2 12 12 C 1.54901 * 101.58349 * 206.13739 * 11 9 7 13 13 N 1.47425 * 104.83244 * 37.00943 * 12 11 9 14 14 C 1.34778 * 125.64961 * 155.83629 * 13 12 11 15 15 O 1.21616 * 119.99661 * 354.90771 * 14 13 12 16 16 C 1.47375 * 120.00467 * 174.91066 * 14 13 12 17 17 C 1.47021 * 127.19829 * 185.64851 * 16 14 13 18 18 C 1.34173 * 105.95570 * 179.97438 * 17 16 14 19 19 O 1.34213 * 109.12772 * 0.02562 * 18 17 16 20 20 C 1.33654 * 110.90289 * 359.71948 * 19 18 17 21 21 C 1.47320 * 108.73835 * 335.71595 * 13 12 11 22 22 H 0.96998 * 120.00119 * 180.02562 * 1 2 3 23 23 H 1.08998 * 111.00264 * 324.21703 * 11 9 7 24 24 H 1.09004 * 111.00047 * 88.06134 * 11 9 7 25 25 H 1.08999 * 110.36840 * 155.85129 * 12 11 9 26 26 H 1.09004 * 110.36827 * 278.06419 * 12 11 9 27 27 H 1.07999 * 127.01500 * 359.97438 * 17 16 14 28 28 H 1.08001 * 125.43770 * 180.02562 * 18 17 16 29 29 H 1.08005 * 125.79961 * 180.28523 * 20 19 18 30 30 H 1.08996 * 110.06220 * 241.87176 * 21 13 12 31 31 H 1.08995 * 109.85001 * 120.60663 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4000 5 1 1.4467 2.6526 -0.7001 6 1 3.5468 1.4401 -0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6076 -2.5713 0.8773 11 6 2.2322 -3.6996 -0.0607 12 6 1.3504 -4.7888 -0.7205 13 7 0.5324 -4.0639 -1.7099 14 6 -0.0292 -4.6022 -2.8105 15 8 0.1974 -5.7604 -3.1042 16 6 -0.9177 -3.7873 -3.6582 17 6 -1.6992 -4.2391 -4.8187 18 6 -2.3516 -3.1562 -5.2681 19 8 -2.0402 -2.1033 -4.4963 20 6 -1.1912 -2.4574 -3.5266 21 6 0.4275 -2.6541 -1.2954 22 1 -0.4850 -0.8400 0.0004 23 1 3.0963 -3.4665 -0.6829 24 1 2.5431 -4.0015 0.9395 25 1 1.9738 -5.5330 -1.2160 26 1 0.7134 -5.2644 0.0253 27 1 -1.7398 -5.2385 -5.2260 28 1 -3.0205 -3.1351 -6.1158 29 1 -0.7882 -1.8014 -2.7691 30 1 -0.6145 -2.3967 -1.1054 31 1 0.8352 -2.0084 -2.0731 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397624361.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:19 Heat of formation + Delta-G solvation = -38.663660 kcal Electronic energy + Delta-G solvation = -16575.616989 eV Core-core repulsion = 13822.934922 eV Total energy + Delta-G solvation = -2752.682067 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.56766 -40.92620 -38.58119 -35.17374 -34.06781 -32.51467 -30.86341 -29.46736 -27.03974 -25.32836 -22.95200 -22.55717 -21.85876 -20.85561 -18.97993 -18.46097 -17.70382 -17.28698 -16.97424 -16.45089 -15.61195 -15.52200 -15.22565 -14.66379 -14.32986 -13.92351 -13.83554 -13.78418 -13.39651 -13.04907 -12.61437 -12.48174 -11.91166 -11.84291 -11.49370 -11.30250 -10.92306 -10.63843 -10.53687 -9.85366 -9.74827 -8.58339 -6.34296 0.24187 1.07444 1.59918 1.64957 1.78726 1.83515 2.10904 2.17953 2.58740 3.17478 3.42663 3.69586 3.80059 3.93849 4.03936 4.18183 4.30606 4.44842 4.50755 4.63666 4.72187 4.84057 4.89730 4.97773 5.16208 5.23249 5.32676 5.50878 5.93757 6.02507 6.20654 6.38886 6.63913 6.97761 7.43046 8.79654 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.023953 B = 0.008778 C = 0.006721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.671745 B = 3188.852698 C = 4164.982918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.020 4.020 3 Si 1.111 2.889 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.603 4.603 8 H 0.052 0.948 9 C 0.017 3.983 10 H 0.020 0.980 11 C -0.110 4.110 12 C 0.106 3.894 13 N -0.613 5.613 14 C 0.590 3.410 15 O -0.586 6.586 16 C -0.263 4.263 17 C -0.190 4.190 18 C -0.020 4.020 19 O -0.178 6.178 20 C 0.019 3.981 21 C 0.112 3.888 22 H 0.263 0.737 23 H 0.064 0.936 24 H 0.091 0.909 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.168 0.832 28 H 0.260 0.740 29 H 0.215 0.785 30 H 0.054 0.946 31 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.690 -3.690 -6.674 8.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.220 4.220 3 Si 0.934 3.066 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.641 4.641 8 H 0.070 0.930 9 C -0.002 4.002 10 H 0.038 0.962 11 C -0.148 4.148 12 C -0.015 4.015 13 N -0.345 5.345 14 C 0.382 3.618 15 O -0.469 6.469 16 C -0.268 4.268 17 C -0.209 4.209 18 C -0.085 4.085 19 O -0.073 6.073 20 C -0.052 4.052 21 C -0.011 4.011 22 H 0.074 0.926 23 H 0.083 0.917 24 H 0.109 0.891 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.186 0.814 28 H 0.276 0.724 29 H 0.231 0.769 30 H 0.072 0.928 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.912 -2.409 -6.927 7.891 hybrid contribution 0.227 -1.917 0.288 1.951 sum -2.685 -4.325 -6.638 8.366 Atomic orbital electron populations 1.70939 1.07516 1.30481 1.47730 1.27037 0.96628 1.05823 0.92542 0.82969 0.74249 0.71893 0.77518 1.20292 1.21020 1.20014 1.22219 0.94425 0.91835 1.55645 0.93015 1.19887 0.93885 0.94973 0.91500 0.96218 1.22699 0.97363 0.93779 1.00920 1.22339 0.93420 0.95315 0.90455 1.48745 1.50623 1.11928 1.23226 1.17316 0.79246 0.85781 0.79413 1.90677 1.64534 1.18810 1.72867 1.21600 1.07232 0.94887 1.03046 1.22948 0.99903 1.01778 0.96287 1.24869 1.02567 0.82843 0.98194 1.83865 1.50336 1.38471 1.34605 1.25423 0.91960 0.95650 0.92136 1.22762 0.99600 0.79505 0.99214 0.92589 0.91733 0.89077 0.90550 0.90792 0.81413 0.72441 0.76876 0.92757 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.43 13.45 21.45 0.29 -50.14 16 2 C -0.02 -1.05 5.34 84.65 0.45 -0.59 16 3 Si 1.11 46.30 29.90 68.60 2.05 48.35 16 4 H -0.28 -11.07 7.11 99.48 0.71 -10.37 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 6 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 7 C -0.60 -30.52 8.38 25.60 0.21 -30.31 16 8 H 0.05 2.62 7.77 -2.91 -0.02 2.59 16 9 C 0.02 0.76 2.46 -10.35 -0.03 0.73 16 10 H 0.02 0.95 8.00 -2.39 -0.02 0.93 16 11 C -0.11 -4.13 6.50 31.99 0.21 -3.93 16 12 C 0.11 3.88 6.93 86.85 0.60 4.49 16 13 N -0.61 -24.96 3.33 -814.97 -2.72 -27.68 16 14 C 0.59 24.69 7.84 86.65 0.68 25.37 16 15 O -0.59 -26.85 17.22 -4.08 -0.07 -26.92 16 16 C -0.26 -9.64 6.28 -18.99 -0.12 -9.76 16 17 C -0.19 -5.48 11.02 23.65 0.26 -5.22 16 18 C -0.02 -0.44 12.03 66.89 0.80 0.36 16 19 O -0.18 -5.25 10.52 4.47 0.05 -5.20 16 20 C 0.02 0.65 10.64 67.39 0.72 1.36 16 21 C 0.11 4.77 3.62 86.67 0.31 5.08 16 22 H 0.26 14.09 5.63 -92.71 -0.52 13.57 16 23 H 0.06 2.48 8.03 -2.39 -0.02 2.47 16 24 H 0.09 3.03 8.14 -2.38 -0.02 3.01 16 25 H 0.08 2.69 7.99 -2.39 -0.02 2.67 16 26 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 27 H 0.17 4.32 8.06 -2.91 -0.02 4.30 16 28 H 0.26 2.76 8.06 -2.91 -0.02 2.73 16 29 H 0.22 7.89 4.48 -2.91 -0.01 7.87 16 30 H 0.05 2.35 5.80 -2.39 -0.01 2.34 16 31 H 0.06 2.63 6.70 -2.39 -0.02 2.61 16 Total: -1.00 -63.14 263.60 5.10 -58.04 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 1.39 Total: 15.96 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: 4.11 Total: -12.41 kcal Atomic # 7 Polarization: -75.39 SS G_CDS: -2.43 Total: -77.82 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -0.02 Total: -32.12 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.05 Total: 48.35 kcal Total: -63.14 5.10 -58.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397624361.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.381 kcal (2) G-P(sol) polarization free energy of solvation -63.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds