Wall clock time and date at job start Mon Mar 30 2020 03:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86803 * 119.99932 * 2 1 4 4 H 1.48498 * 109.47145 * 270.00485 * 3 2 1 5 5 H 1.48504 * 109.46985 * 30.00213 * 3 2 1 6 6 H 1.48498 * 109.47019 * 150.00133 * 3 2 1 7 7 C 1.39944 * 120.00304 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00329 * 197.84327 * 7 2 1 9 9 C 1.41400 * 119.99719 * 17.84498 * 7 2 1 10 10 C 1.40712 * 120.24111 * 204.38148 * 9 7 2 11 11 C 1.37618 * 119.74335 * 180.02562 * 10 9 7 12 12 C 1.38637 * 120.24955 * 0.02768 * 11 10 9 13 13 C 1.50706 * 119.75121 * 179.97438 * 12 11 10 14 14 N 1.46896 * 109.47235 * 89.99536 * 13 12 11 15 15 C 1.46901 * 110.99757 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.46998 * 179.97438 * 15 14 13 17 17 O 1.20831 * 120.00115 * 0.02562 * 16 15 14 18 18 O 1.34229 * 119.99913 * 179.97438 * 16 15 14 19 19 C 1.38637 * 120.49892 * 0.24481 * 12 11 10 20 20 C 1.37614 * 120.24842 * 359.45565 * 19 12 11 21 21 H 0.96995 * 120.00332 * 359.97438 * 1 2 3 22 22 H 1.07999 * 120.13271 * 0.02562 * 10 9 7 23 23 H 1.07997 * 119.87897 * 180.02562 * 11 10 9 24 24 H 1.08992 * 109.46748 * 329.99500 * 13 12 11 25 25 H 1.09002 * 109.46685 * 209.99594 * 13 12 11 26 26 H 1.00906 * 110.99994 * 303.95269 * 14 13 12 27 27 H 1.08999 * 109.47248 * 299.99727 * 15 14 13 28 28 H 1.08998 * 109.46958 * 60.00052 * 15 14 13 29 29 H 0.96703 * 116.99668 * 179.97438 * 18 16 15 30 30 H 1.08000 * 119.87153 * 179.70526 * 19 12 11 31 31 H 1.08001 * 120.13156 * 180.27043 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4896 2.0465 -1.4001 5 1 1.4396 2.6527 0.7001 6 1 3.5397 1.4402 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2860 9 6 1.3520 -2.4068 -0.3763 10 6 1.8259 -3.6498 0.0823 11 6 1.1799 -4.8065 -0.2902 12 6 0.0667 -4.7502 -1.1146 13 6 -0.6318 -6.0239 -1.5160 14 7 -1.6776 -6.3394 -0.5339 15 6 -2.3808 -7.5780 -0.8933 16 6 -3.4433 -7.8689 0.1351 17 8 -3.5990 -7.1209 1.0712 18 8 -4.2173 -8.9585 0.0107 19 6 -0.4056 -3.5315 -1.5770 20 6 0.2209 -2.3618 -1.2123 21 1 -0.4850 0.8400 0.0004 22 1 2.6932 -3.6961 0.7242 23 1 1.5415 -5.7616 0.0609 24 1 0.0911 -6.8388 -1.5516 25 1 -1.0838 -5.8958 -2.4996 26 1 -1.2930 -6.3994 0.3971 27 1 -2.8449 -7.4612 -1.8726 28 1 -1.6699 -8.4036 -0.9243 29 1 -4.8848 -9.1033 0.6953 30 1 -1.2708 -3.4998 -2.2226 31 1 -0.1512 -1.4131 -1.5701 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398974734.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:33 Heat of formation + Delta-G solvation = -77.419342 kcal Electronic energy + Delta-G solvation = -15474.056041 eV Core-core repulsion = 12719.693402 eV Total energy + Delta-G solvation = -2754.362639 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.17497 -37.78580 -36.30208 -35.37508 -33.55630 -30.57631 -29.26156 -27.91841 -25.48363 -23.01999 -21.31304 -20.93687 -19.93136 -18.05838 -17.28557 -16.80479 -16.18051 -15.29682 -14.97229 -14.30385 -14.11281 -13.70643 -13.39807 -13.17005 -12.55181 -12.23931 -11.93371 -11.74137 -11.54616 -11.49792 -11.07965 -10.91838 -10.60699 -10.46722 -10.36435 -9.60804 -9.35891 -9.12625 -8.22102 -7.43051 -7.30802 -6.74534 -4.34325 2.22565 2.68485 2.94323 3.07901 3.10243 3.11714 3.22740 3.94047 4.44601 4.75761 5.16179 5.22523 5.29545 5.71155 5.77296 5.82393 6.19941 6.33682 6.44414 6.44525 6.96992 7.08382 7.17586 7.30980 7.36276 7.56668 7.63433 7.87180 7.91934 8.07124 8.14788 8.31494 8.66129 8.90744 8.99238 10.19654 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.048253 B = 0.004596 C = 0.004423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.137683 B = 6091.144660 C = 6328.797117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.114 3.886 10 C -0.228 4.228 11 C -0.083 4.083 12 C -0.219 4.219 13 C 0.128 3.872 14 N -0.673 5.673 15 C 0.066 3.934 16 C 0.473 3.527 17 O -0.497 6.497 18 O -0.524 6.524 19 C -0.076 4.076 20 C -0.168 4.168 21 H 0.281 0.719 22 H 0.091 0.909 23 H 0.083 0.917 24 H 0.023 0.977 25 H 0.066 0.934 26 H 0.351 0.649 27 H 0.111 0.889 28 H 0.067 0.933 29 H 0.408 0.592 30 H 0.088 0.912 31 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.917 -10.912 -2.476 11.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.493 4.493 8 H 0.096 0.904 9 C 0.111 3.889 10 C -0.248 4.248 11 C -0.102 4.102 12 C -0.220 4.220 13 C 0.001 3.999 14 N -0.308 5.308 15 C -0.064 4.064 16 C 0.314 3.686 17 O -0.382 6.382 18 O -0.337 6.337 19 C -0.095 4.095 20 C -0.188 4.188 21 H 0.092 0.908 22 H 0.109 0.891 23 H 0.101 0.899 24 H 0.041 0.959 25 H 0.085 0.915 26 H 0.171 0.829 27 H 0.129 0.871 28 H 0.084 0.916 29 H 0.266 0.734 30 H 0.106 0.894 31 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.342 -10.072 -2.791 11.318 hybrid contribution 0.451 0.029 0.821 0.938 sum -3.890 -10.043 -1.970 10.949 Atomic orbital electron populations 1.69835 1.07586 1.29259 1.34740 1.25921 0.94707 1.01321 0.92282 0.86317 0.80491 0.80631 0.79305 1.19268 1.20312 1.18636 1.19623 0.98149 0.91349 1.40135 0.90444 1.17637 0.91040 0.91981 0.88234 1.20925 1.03912 0.92883 1.07049 1.20356 0.95795 0.96312 0.97721 1.18816 1.00624 0.92928 1.09664 1.20596 0.90041 0.95035 0.94218 1.60450 1.32259 1.30802 1.07271 1.21429 0.93866 0.94180 0.96915 1.23584 0.81393 0.77488 0.86142 1.90763 1.67736 1.47129 1.32614 1.84518 1.48284 1.45579 1.55270 1.20500 0.97574 0.92470 0.98995 1.21315 0.99514 0.96775 1.01176 0.90817 0.89109 0.89862 0.95860 0.91518 0.82909 0.87080 0.91552 0.73353 0.89394 0.86475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.73 10.95 55.55 0.61 -20.13 16 2 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 3 Si 0.91 18.77 29.60 -169.99 -5.03 13.74 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.46 -12.40 9.05 -37.74 -0.34 -12.75 16 8 H 0.08 1.99 7.91 -52.49 -0.42 1.58 16 9 C 0.11 3.06 5.57 -106.82 -0.60 2.46 16 10 C -0.23 -5.63 9.80 -38.87 -0.38 -6.01 16 11 C -0.08 -1.84 9.67 -39.66 -0.38 -2.22 16 12 C -0.22 -4.70 5.42 -104.32 -0.56 -5.26 16 13 C 0.13 2.15 5.80 -4.97 -0.03 2.12 16 14 N -0.67 -11.01 6.12 -116.34 -0.71 -11.72 16 15 C 0.07 0.81 6.28 -4.97 -0.03 0.77 16 16 C 0.47 6.13 8.37 36.01 0.30 6.43 16 17 O -0.50 -8.50 16.96 -18.75 -0.32 -8.81 16 18 O -0.52 -4.98 13.42 -39.26 -0.53 -5.50 16 19 C -0.08 -1.80 9.67 -39.66 -0.38 -2.18 16 20 C -0.17 -4.43 8.70 -38.87 -0.34 -4.76 16 21 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 22 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 23 H 0.08 1.60 8.06 -52.49 -0.42 1.18 16 24 H 0.02 0.35 8.08 -51.93 -0.42 -0.07 16 25 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 26 H 0.35 6.07 8.42 -39.29 -0.33 5.74 16 27 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.41 2.20 9.10 45.56 0.41 2.62 16 30 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 31 H 0.12 3.18 6.16 -52.49 -0.32 2.86 16 LS Contribution 278.33 15.07 4.19 4.19 Total: -1.00 -30.58 278.33 -7.36 -37.94 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -2.74 Total: 9.85 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -2.84 Total: -19.56 kcal Atomic # 7 Polarization: -31.75 SS G_CDS: -0.10 Total: -31.85 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.85 Total: -14.32 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.58 -7.36 -37.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398974734.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.477 kcal (2) G-P(sol) polarization free energy of solvation -30.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds