Wall clock time and date at job start Mon Mar 30 2020 03:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86803 * 119.99932 * 2 1 4 4 H 1.48498 * 109.47145 * 270.00485 * 3 2 1 5 5 H 1.48504 * 109.46985 * 30.00213 * 3 2 1 6 6 H 1.48498 * 109.47019 * 150.00133 * 3 2 1 7 7 C 1.39944 * 120.00304 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00329 * 197.84327 * 7 2 1 9 9 C 1.41400 * 119.99719 * 17.84498 * 7 2 1 10 10 C 1.40712 * 120.24111 * 204.38148 * 9 7 2 11 11 C 1.37618 * 119.74335 * 180.02562 * 10 9 7 12 12 C 1.38637 * 120.24955 * 0.02768 * 11 10 9 13 13 C 1.50706 * 119.75121 * 179.97438 * 12 11 10 14 14 N 1.46896 * 109.47235 * 89.99536 * 13 12 11 15 15 C 1.46901 * 110.99757 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.46998 * 179.97438 * 15 14 13 17 17 O 1.20831 * 120.00115 * 0.02562 * 16 15 14 18 18 O 1.34229 * 119.99913 * 179.97438 * 16 15 14 19 19 C 1.38637 * 120.49892 * 0.24481 * 12 11 10 20 20 C 1.37614 * 120.24842 * 359.45565 * 19 12 11 21 21 H 0.96995 * 120.00332 * 359.97438 * 1 2 3 22 22 H 1.07999 * 120.13271 * 0.02562 * 10 9 7 23 23 H 1.07997 * 119.87897 * 180.02562 * 11 10 9 24 24 H 1.08992 * 109.46748 * 329.99500 * 13 12 11 25 25 H 1.09002 * 109.46685 * 209.99594 * 13 12 11 26 26 H 1.00906 * 110.99994 * 303.95269 * 14 13 12 27 27 H 1.08999 * 109.47248 * 299.99727 * 15 14 13 28 28 H 1.08998 * 109.46958 * 60.00052 * 15 14 13 29 29 H 0.96703 * 116.99668 * 179.97438 * 18 16 15 30 30 H 1.08000 * 119.87153 * 179.70526 * 19 12 11 31 31 H 1.08001 * 120.13156 * 180.27043 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4896 2.0465 -1.4001 5 1 1.4396 2.6527 0.7001 6 1 3.5397 1.4402 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2860 9 6 1.3520 -2.4068 -0.3763 10 6 1.8259 -3.6498 0.0823 11 6 1.1799 -4.8065 -0.2902 12 6 0.0667 -4.7502 -1.1146 13 6 -0.6318 -6.0239 -1.5160 14 7 -1.6776 -6.3394 -0.5339 15 6 -2.3808 -7.5780 -0.8933 16 6 -3.4433 -7.8689 0.1351 17 8 -3.5990 -7.1209 1.0712 18 8 -4.2173 -8.9585 0.0107 19 6 -0.4056 -3.5315 -1.5770 20 6 0.2209 -2.3618 -1.2123 21 1 -0.4850 0.8400 0.0004 22 1 2.6932 -3.6961 0.7242 23 1 1.5415 -5.7616 0.0609 24 1 0.0911 -6.8388 -1.5516 25 1 -1.0838 -5.8958 -2.4996 26 1 -1.2930 -6.3994 0.3971 27 1 -2.8449 -7.4612 -1.8726 28 1 -1.6699 -8.4036 -0.9243 29 1 -4.8848 -9.1033 0.6953 30 1 -1.2708 -3.4998 -2.2226 31 1 -0.1512 -1.4131 -1.5701 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398974734.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:32 Heat of formation + Delta-G solvation = -98.857746 kcal Electronic energy + Delta-G solvation = -15474.985680 eV Core-core repulsion = 12719.693402 eV Total energy + Delta-G solvation = -2755.292278 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.16585 -39.54325 -37.33773 -36.68225 -35.32005 -32.24472 -31.12754 -29.36487 -27.04944 -24.55597 -22.84518 -22.23443 -21.67400 -19.20473 -19.02571 -17.91628 -17.23021 -17.06679 -16.19452 -15.78301 -15.65460 -15.24505 -15.04126 -14.40623 -14.09505 -13.77947 -13.37488 -13.33815 -13.11786 -12.71307 -12.63465 -12.49943 -12.29596 -12.06424 -11.62877 -11.38381 -11.21010 -11.00362 -9.43050 -9.32362 -9.15033 -8.62166 -6.32661 0.95178 1.17979 1.25543 1.37821 1.50955 1.51560 2.07275 2.21359 2.72426 3.41631 3.82381 4.22984 4.31655 4.39014 4.42435 4.47895 4.60134 4.69695 4.86051 5.09226 5.17378 5.41000 5.48847 5.65224 5.73578 5.92315 6.06531 6.13255 6.24933 6.36982 6.41679 6.73588 6.96023 7.05653 7.06777 8.34600 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.048253 B = 0.004596 C = 0.004423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.137683 B = 6091.144660 C = 6328.797117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.034 3.966 3 Si 0.983 3.017 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.258 1.258 7 C -0.504 4.504 8 H 0.074 0.926 9 C 0.079 3.921 10 C -0.246 4.246 11 C -0.084 4.084 12 C -0.205 4.205 13 C 0.135 3.865 14 N -0.696 5.696 15 C 0.067 3.933 16 C 0.481 3.519 17 O -0.548 6.548 18 O -0.511 6.511 19 C -0.086 4.086 20 C -0.195 4.195 21 H 0.287 0.713 22 H 0.095 0.905 23 H 0.119 0.881 24 H 0.051 0.949 25 H 0.082 0.918 26 H 0.343 0.657 27 H 0.132 0.868 28 H 0.099 0.901 29 H 0.427 0.573 30 H 0.104 0.896 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.146 -12.782 -3.190 13.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.181 4.181 3 Si 0.804 3.196 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.182 1.182 7 C -0.534 4.534 8 H 0.092 0.908 9 C 0.076 3.924 10 C -0.265 4.265 11 C -0.102 4.102 12 C -0.206 4.206 13 C 0.008 3.992 14 N -0.330 5.330 15 C -0.063 4.063 16 C 0.324 3.676 17 O -0.438 6.438 18 O -0.325 6.325 19 C -0.105 4.105 20 C -0.214 4.214 21 H 0.098 0.902 22 H 0.113 0.887 23 H 0.137 0.863 24 H 0.069 0.931 25 H 0.100 0.900 26 H 0.162 0.838 27 H 0.150 0.850 28 H 0.117 0.883 29 H 0.289 0.711 30 H 0.122 0.878 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.592 -11.994 -3.520 13.317 hybrid contribution 0.410 0.351 1.013 1.148 sum -4.182 -11.643 -2.507 12.623 Atomic orbital electron populations 1.69898 1.09103 1.30479 1.35822 1.26780 0.95450 1.04600 0.91223 0.85192 0.79032 0.75843 0.79546 1.18575 1.19311 1.18169 1.19867 0.98354 0.92725 1.42438 0.90750 1.17988 0.91958 0.93161 0.89259 1.21166 1.04551 0.93310 1.07521 1.20739 0.95506 0.96902 0.97100 1.19360 0.99776 0.94372 1.07113 1.20527 0.90733 0.93179 0.94777 1.60264 1.32162 1.33905 1.06666 1.21540 0.94049 0.93371 0.97290 1.23728 0.81292 0.77256 0.85303 1.90760 1.69284 1.49008 1.34709 1.84467 1.48302 1.43813 1.55875 1.20781 0.97863 0.92599 0.99223 1.21288 1.00481 0.97136 1.02512 0.90225 0.88706 0.86333 0.93104 0.89958 0.83813 0.84979 0.88349 0.71127 0.87828 0.88495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.13 10.95 21.83 0.24 -44.89 16 2 C 0.03 1.78 5.14 85.26 0.44 2.22 16 3 Si 0.98 39.36 29.60 68.60 2.03 41.39 16 4 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 5 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 6 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 7 C -0.50 -28.17 9.05 23.46 0.21 -27.96 16 8 H 0.07 4.00 7.91 -2.91 -0.02 3.98 16 9 C 0.08 4.39 5.57 -21.29 -0.12 4.27 16 10 C -0.25 -12.29 9.80 22.73 0.22 -12.07 16 11 C -0.08 -3.59 9.67 22.22 0.21 -3.37 16 12 C -0.20 -8.42 5.42 -19.67 -0.11 -8.53 16 13 C 0.13 4.03 5.80 85.56 0.50 4.53 16 14 N -0.70 -20.72 6.12 -521.99 -3.19 -23.91 16 15 C 0.07 1.36 6.28 85.56 0.54 1.90 16 16 C 0.48 11.18 8.37 71.24 0.60 11.78 16 17 O -0.55 -18.11 16.96 21.95 0.37 -17.73 16 18 O -0.51 -8.02 13.42 -51.41 -0.69 -8.71 16 19 C -0.09 -4.04 9.67 22.22 0.21 -3.82 16 20 C -0.19 -10.60 8.70 22.73 0.20 -10.40 16 21 H 0.29 14.17 8.30 -92.71 -0.77 13.40 16 22 H 0.09 4.50 8.06 -2.91 -0.02 4.48 16 23 H 0.12 4.18 8.06 -2.91 -0.02 4.16 16 24 H 0.05 1.27 8.08 -2.39 -0.02 1.25 16 25 H 0.08 2.23 8.08 -2.39 -0.02 2.21 16 26 H 0.34 11.11 8.42 -89.69 -0.76 10.36 16 27 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.43 3.37 9.10 -74.06 -0.67 2.69 16 30 H 0.10 4.43 8.06 -2.91 -0.02 4.40 16 31 H 0.10 5.56 6.16 -2.91 -0.02 5.54 16 Total: -1.00 -68.82 278.33 1.40 -67.42 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: -0.27 Total: 27.90 kcal Atomic # 6 Polarization: -44.37 SS G_CDS: 2.90 Total: -41.47 kcal Atomic # 7 Polarization: -65.85 SS G_CDS: -2.95 Total: -68.80 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.32 Total: -26.44 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Total: -68.82 1.40 -67.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398974734.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.437 kcal (2) G-P(sol) polarization free energy of solvation -68.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds