Wall clock time and date at job start Mon Mar 30 2020 03:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99825 * 2 1 4 4 H 1.48504 * 109.46928 * 239.99553 * 3 2 1 5 5 H 1.48495 * 109.47501 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47006 * 120.00020 * 3 2 1 7 7 C 1.38810 * 119.99799 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99866 * 199.00182 * 7 2 1 9 9 N 1.36941 * 120.00083 * 19.00681 * 7 2 1 10 10 C 1.46374 * 119.76873 * 28.64238 * 9 7 2 11 11 C 1.52184 * 111.19489 * 243.71033 * 10 9 7 12 12 O 1.43241 * 110.14097 * 298.82889 * 11 10 9 13 13 C 1.35675 * 115.83643 * 89.22053 * 12 11 10 14 14 C 1.38853 * 120.17904 * 108.31676 * 13 12 11 15 15 C 1.38088 * 119.94735 * 183.74469 * 14 13 12 16 16 C 1.38722 * 120.29765 * 359.12236 * 15 14 13 17 17 O 1.35989 * 120.09100 * 179.39440 * 16 15 14 18 18 C 1.38880 * 119.82692 * 359.36680 * 16 15 14 19 19 C 1.37632 * 119.64745 * 0.71230 * 18 16 15 20 20 C 1.46626 * 119.77122 * 208.62222 * 9 7 2 21 21 H 0.97001 * 119.99588 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.14077 * 4.15488 * 10 9 7 23 23 H 1.09001 * 109.13424 * 123.27443 * 10 9 7 24 24 H 1.09009 * 109.35313 * 59.03400 * 11 10 9 25 25 H 1.08991 * 109.36291 * 178.62149 * 11 10 9 26 26 H 1.08005 * 120.02705 * 3.48646 * 14 13 12 27 27 H 1.08002 * 119.85716 * 179.40531 * 15 14 13 28 28 H 0.96701 * 114.00011 * 89.99813 * 17 16 15 29 29 H 1.08002 * 120.17461 * 180.72889 * 18 16 15 30 30 H 1.09001 * 109.58416 * 339.79232 * 20 9 7 31 31 H 1.09000 * 109.69937 * 219.44672 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0461 -1.2275 0.3051 9 7 1.3815 -2.3559 -0.3852 10 6 0.2803 -2.2966 -1.3476 11 6 -1.0242 -2.7670 -0.7207 12 8 -0.9035 -4.1292 -0.2944 13 6 -0.4482 -4.3149 0.9701 14 6 -1.3105 -4.7569 1.9646 15 6 -0.8619 -4.8703 3.2657 16 6 0.4531 -4.5617 3.5819 17 8 0.8871 -4.6630 4.8667 18 6 1.3253 -4.1495 2.5829 19 6 0.8728 -4.0365 1.2880 20 6 1.8164 -3.6421 0.1684 21 1 -0.4849 0.8401 0.0004 22 1 0.1612 -1.2692 -1.6917 23 1 0.5165 -2.9329 -2.2005 24 1 -1.2592 -2.1389 0.1386 25 1 -1.8267 -2.6877 -1.4539 26 1 -2.3325 -5.0079 1.7216 27 1 -1.5365 -5.2051 4.0398 28 1 1.2446 -5.5324 5.0937 29 1 2.3533 -3.9192 2.8208 30 1 2.8291 -3.5475 0.5605 31 1 1.7963 -4.4034 -0.6114 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595849704.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:26 Heat of formation + Delta-G solvation = -47.333371 kcal Electronic energy + Delta-G solvation = -16947.273045 eV Core-core repulsion = 14194.215031 eV Total energy + Delta-G solvation = -2753.058014 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.29093 -39.38689 -37.17296 -36.81552 -33.76876 -32.19372 -30.99798 -29.03567 -27.33807 -25.41171 -23.66970 -22.41624 -21.97515 -19.14078 -18.90610 -18.48263 -17.35022 -16.76205 -16.18231 -16.10004 -15.55990 -15.35111 -15.12432 -14.68353 -14.29440 -13.84825 -13.53058 -13.28287 -13.03302 -12.64881 -12.58499 -12.40789 -12.13182 -11.97423 -11.61249 -11.51287 -10.88730 -10.46929 -9.81247 -9.15259 -8.76777 -7.94459 -5.39340 0.20236 0.42523 1.46860 1.48392 1.55144 2.39578 2.52005 3.17042 3.21680 3.34994 3.69643 3.94703 4.00601 4.34642 4.47664 4.55398 4.65050 4.65426 4.71448 4.79686 4.92061 5.08516 5.25601 5.31525 5.41753 5.46741 5.61392 5.69628 5.79360 6.33565 6.66921 6.93445 7.09307 7.75722 8.25677 9.11632 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.026301 B = 0.009530 C = 0.008095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.346083 B = 2937.282530 C = 3458.247514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.040 4.040 3 Si 0.966 3.034 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.280 1.280 7 C -0.273 4.273 8 H 0.067 0.933 9 N -0.598 5.598 10 C 0.143 3.857 11 C 0.064 3.936 12 O -0.347 6.347 13 C 0.076 3.924 14 C -0.127 4.127 15 C -0.140 4.140 16 C 0.092 3.908 17 O -0.505 6.505 18 C -0.136 4.136 19 C -0.116 4.116 20 C 0.179 3.821 21 H 0.252 0.748 22 H 0.076 0.924 23 H 0.024 0.976 24 H 0.048 0.952 25 H 0.099 0.901 26 H 0.145 0.855 27 H 0.156 0.844 28 H 0.409 0.591 29 H 0.131 0.869 30 H 0.066 0.934 31 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.769 -9.625 3.933 10.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.236 4.236 3 Si 0.795 3.205 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.403 4.403 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.017 3.983 11 C -0.011 4.011 12 O -0.264 6.264 13 C 0.032 3.968 14 C -0.145 4.145 15 C -0.159 4.159 16 C 0.048 3.952 17 O -0.317 6.317 18 C -0.155 4.155 19 C -0.120 4.120 20 C 0.053 3.947 21 H 0.061 0.939 22 H 0.094 0.906 23 H 0.042 0.958 24 H 0.066 0.934 25 H 0.117 0.883 26 H 0.163 0.837 27 H 0.174 0.826 28 H 0.267 0.733 29 H 0.149 0.851 30 H 0.085 0.915 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.083 -9.028 3.795 9.853 hybrid contribution 0.480 0.817 0.115 0.954 sum -0.602 -8.212 3.909 9.115 Atomic orbital electron populations 1.70124 1.06324 1.26076 1.53930 1.25732 0.96086 1.01272 1.00538 0.85368 0.77683 0.79319 0.78173 1.20334 1.21878 1.20619 1.19462 0.93583 0.85960 1.41253 0.91566 1.44187 1.38527 1.02140 1.47000 1.20973 0.86938 1.00295 0.90066 1.23153 0.99133 0.79141 0.99705 1.85935 1.84708 1.28403 1.27357 1.18862 0.91876 1.00714 0.85381 1.21295 0.99872 1.01904 0.91470 1.21347 0.95863 1.02445 0.96237 1.18496 0.92405 1.00607 0.83733 1.84798 1.82921 1.39882 1.24141 1.21176 1.00746 1.02131 0.91489 1.21536 0.96191 0.97286 0.96950 1.20257 0.95006 0.87652 0.91794 0.93860 0.90569 0.95841 0.93351 0.88294 0.83729 0.82635 0.73271 0.85106 0.91542 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.77 10.25 21.65 0.22 -51.54 16 2 C -0.04 -2.15 4.81 84.86 0.41 -1.74 16 3 Si 0.97 44.18 29.59 68.60 2.03 46.21 16 4 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 7 C -0.27 -14.81 9.52 84.03 0.80 -14.02 16 8 H 0.07 3.53 7.88 -2.91 -0.02 3.51 16 9 N -0.60 -30.13 2.71 -706.16 -1.91 -32.05 16 10 C 0.14 6.86 5.37 86.13 0.46 7.33 16 11 C 0.06 2.87 6.49 71.71 0.47 3.33 16 12 O -0.35 -14.84 9.90 -89.92 -0.89 -15.73 16 13 C 0.08 3.13 5.61 22.53 0.13 3.26 16 14 C -0.13 -4.37 9.99 22.38 0.22 -4.14 16 15 C -0.14 -4.29 9.97 22.35 0.22 -4.07 16 16 C 0.09 3.00 6.71 22.54 0.15 3.15 16 17 O -0.50 -13.58 13.51 -93.42 -1.26 -14.85 16 18 C -0.14 -5.06 9.65 22.28 0.22 -4.85 16 19 C -0.12 -4.86 5.49 -19.60 -0.11 -4.96 16 20 C 0.18 7.77 5.83 85.91 0.50 8.27 16 21 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 22 H 0.08 4.00 5.89 -2.39 -0.01 3.98 16 23 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.05 2.48 6.98 -2.38 -0.02 2.46 16 25 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 26 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 27 H 0.16 3.67 8.06 -2.91 -0.02 3.65 16 28 H 0.41 6.11 9.06 -74.06 -0.67 5.44 16 29 H 0.13 4.56 8.00 -2.91 -0.02 4.54 16 30 H 0.07 2.73 7.76 -2.39 -0.02 2.71 16 31 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -63.99 261.15 2.13 -61.86 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.48 Total: 14.54 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 3.47 Total: -8.45 kcal Atomic # 7 Polarization: -81.90 SS G_CDS: -1.69 Total: -83.59 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -2.15 Total: -30.58 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -63.99 2.13 -61.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595849704.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.529 kcal (2) G-P(sol) polarization free energy of solvation -63.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds