Wall clock time and date at job start Mon Mar 30 2020 03:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35536 * 116.99935 * 2 1 4 4 C 1.39150 * 119.90213 * 0.28718 * 3 2 1 5 5 C 1.36390 * 120.47268 * 180.27545 * 4 3 2 6 6 C 1.50703 * 119.87184 * 179.69398 * 5 4 3 7 7 C 1.40948 * 120.26008 * 359.71887 * 5 4 3 8 8 C 1.41269 * 120.09846 * 179.97438 * 7 5 4 9 9 H 1.08001 * 119.99850 * 333.65405 * 8 7 5 10 10 C 1.39865 * 119.99923 * 153.66155 * 8 7 5 11 11 N 1.30889 * 120.00066 * 343.76150 * 10 8 7 12 12 Si 1.86800 * 120.00039 * 163.76247 * 10 8 7 13 13 H 1.48501 * 109.47057 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47288 * 119.99666 * 12 10 8 15 15 H 1.48502 * 109.47128 * 239.99914 * 12 10 8 16 16 C 1.40518 * 119.79873 * 359.97438 * 7 5 4 17 17 C 1.38954 * 119.53976 * 0.02562 * 16 7 5 18 18 C 1.47520 * 120.13351 * 180.02562 * 17 16 7 19 19 N 1.29391 * 119.99809 * 180.27766 * 18 17 16 20 20 O 1.41599 * 119.99841 * 179.72749 * 19 18 17 21 21 H 1.09000 * 109.47454 * 59.99570 * 1 2 3 22 22 H 1.09005 * 109.46775 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47396 * 299.99556 * 1 2 3 24 24 H 1.07997 * 119.76688 * 359.97438 * 4 3 2 25 25 H 1.09003 * 109.46852 * 270.02454 * 6 5 4 26 26 H 1.08999 * 109.46872 * 30.01954 * 6 5 4 27 27 H 1.08996 * 109.47041 * 150.02361 * 6 5 4 28 28 H 0.96997 * 120.00478 * 180.02562 * 11 10 8 29 29 H 1.08010 * 120.22848 * 179.97438 * 16 7 5 30 30 H 1.07994 * 119.99577 * 359.97438 * 18 17 16 31 31 H 0.96705 * 113.99858 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 1.2844 2.3733 0.0060 5 6 1.8914 3.5947 0.0005 6 6 1.0552 4.8485 0.0001 7 6 3.2977 3.6889 -0.0055 8 6 3.9229 4.9557 -0.0119 9 1 3.4085 5.8096 -0.4274 10 6 5.2080 5.1040 0.5199 11 7 5.7056 4.1762 1.2976 12 14 6.2142 6.6262 0.1202 13 1 5.4311 7.5166 -0.7738 14 1 6.5403 7.3480 1.3763 15 1 7.4714 6.2240 -0.5602 16 6 4.0760 2.5189 -0.0052 17 6 3.4489 1.2790 0.0005 18 6 4.2531 0.0423 0.0015 19 7 3.6664 -1.1110 0.0013 20 8 4.4384 -2.2980 -0.0035 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 0.2063 2.3106 0.0103 25 1 0.8495 5.1477 -1.0276 26 1 0.1153 4.6584 0.5183 27 1 1.5961 5.6460 0.5094 28 1 6.5966 4.2792 1.6667 29 1 5.1542 2.5830 -0.0102 30 1 5.3315 0.0996 -0.0027 31 1 3.9122 -3.1094 -0.0028 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642879368.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:37 Heat of formation + Delta-G solvation = -30.805009 kcal Electronic energy + Delta-G solvation = -16228.318683 eV Core-core repulsion = 13475.977393 eV Total energy + Delta-G solvation = -2752.341290 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.63700 -38.29687 -37.74618 -35.28612 -34.76687 -32.02352 -30.98647 -28.38691 -28.05995 -26.11059 -23.15447 -22.71426 -21.01050 -18.93874 -18.53767 -18.00379 -17.02227 -16.62597 -16.28169 -15.69040 -15.65399 -14.75366 -14.58013 -14.47736 -14.19489 -13.92375 -13.55501 -12.99833 -12.89316 -12.81087 -12.71259 -12.29286 -12.15467 -11.57376 -11.48600 -11.36046 -11.14133 -10.76341 -10.67868 -9.16804 -8.75707 -8.48995 -6.14591 0.23469 1.03427 1.45307 1.47566 1.58806 1.76704 2.26509 2.28791 2.80751 2.86213 3.69117 3.87351 4.28547 4.45674 4.52893 4.58342 4.70059 4.77901 4.85624 5.04560 5.12077 5.15952 5.27357 5.38967 5.44284 5.71514 5.82166 5.91977 6.15301 6.29101 6.61391 6.85010 6.96092 7.02817 7.12922 8.45276 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.025156 B = 0.008377 C = 0.006414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.800176 B = 3341.609289 C = 4364.629263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.316 6.316 3 C 0.046 3.954 4 C -0.184 4.184 5 C -0.144 4.144 6 C -0.087 4.087 7 C 0.049 3.951 8 C -0.485 4.485 9 H 0.083 0.917 10 C 0.034 3.966 11 N -0.836 5.836 12 Si 0.975 3.025 13 H -0.256 1.256 14 H -0.272 1.272 15 H -0.271 1.271 16 C -0.113 4.113 17 C -0.099 4.099 18 C 0.151 3.849 19 N -0.330 5.330 20 O -0.435 6.435 21 H 0.053 0.947 22 H 0.111 0.889 23 H 0.050 0.950 24 H 0.133 0.867 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.285 0.715 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.613 -2.854 -1.974 6.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.229 6.229 3 C -0.001 4.001 4 C -0.202 4.202 5 C -0.147 4.147 6 C -0.143 4.143 7 C 0.047 3.953 8 C -0.515 4.515 9 H 0.102 0.898 10 C -0.179 4.179 11 N -0.463 5.463 12 Si 0.797 3.203 13 H -0.180 1.180 14 H -0.197 1.197 15 H -0.196 1.196 16 C -0.135 4.135 17 C -0.101 4.101 18 C -0.058 4.058 19 N -0.073 5.073 20 O -0.345 6.345 21 H 0.071 0.929 22 H 0.129 0.871 23 H 0.069 0.931 24 H 0.150 0.850 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.135 0.865 30 H 0.132 0.868 31 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -5.679 -3.250 -1.831 6.794 hybrid contribution 1.043 0.303 0.075 1.089 sum -4.636 -2.947 -1.756 5.767 Atomic orbital electron populations 1.23117 0.78818 1.04194 1.01051 1.86074 1.21176 1.26239 1.89401 1.18921 0.90867 0.84643 1.05638 1.20579 0.99200 0.91431 1.09001 1.19981 0.93903 0.95062 1.05719 1.20505 0.97765 0.94727 1.01326 1.17673 0.91190 0.93598 0.92828 1.19646 1.00276 0.95310 1.36259 0.89848 1.26625 0.98531 1.00606 0.92135 1.69875 1.17263 1.35608 1.23603 0.85257 0.78135 0.78032 0.78904 1.17982 1.19690 1.19560 1.21244 0.99498 0.89690 1.03112 1.17737 0.89843 0.90752 1.11789 1.24342 0.98201 0.90431 0.92834 1.76903 1.21608 0.93322 1.15418 1.88324 1.35682 1.14921 1.95580 0.92876 0.87059 0.93132 0.84951 0.91873 0.91568 0.92391 0.90488 0.86527 0.86845 0.73286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.66 9.80 113.37 1.11 1.77 16 2 O -0.32 -12.60 8.35 -88.40 -0.74 -13.34 16 3 C 0.05 2.08 6.72 23.08 0.16 2.23 16 4 C -0.18 -7.67 8.58 22.06 0.19 -7.48 16 5 C -0.14 -6.49 5.90 -19.63 -0.12 -6.60 16 6 C -0.09 -3.19 9.38 71.24 0.67 -2.53 16 7 C 0.05 2.51 5.56 -21.31 -0.12 2.39 16 8 C -0.48 -24.45 8.08 23.41 0.19 -24.26 16 9 H 0.08 4.00 6.87 -2.91 -0.02 3.98 16 10 C 0.03 1.66 5.15 85.23 0.44 2.10 16 11 N -0.84 -42.64 10.98 21.81 0.24 -42.40 16 12 Si 0.97 37.24 29.59 68.60 2.03 39.27 16 13 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 14 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 15 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 16 C -0.11 -5.81 8.40 23.00 0.19 -5.62 16 17 C -0.10 -4.74 5.88 -20.07 -0.12 -4.85 16 18 C 0.15 6.68 10.90 87.50 0.95 7.64 16 19 N -0.33 -13.79 9.96 -52.32 -0.52 -14.31 16 20 O -0.43 -15.17 14.95 -38.78 -0.58 -15.75 16 21 H 0.05 1.39 7.66 -2.39 -0.02 1.37 16 22 H 0.11 2.48 8.14 -2.38 -0.02 2.46 16 23 H 0.05 1.35 7.63 -2.39 -0.02 1.33 16 24 H 0.13 4.59 6.25 -2.91 -0.02 4.57 16 25 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.07 2.07 8.08 -2.39 -0.02 2.05 16 27 H 0.06 2.24 6.75 -2.39 -0.02 2.22 16 28 H 0.28 13.27 8.30 -92.71 -0.77 12.50 16 29 H 0.12 6.19 6.23 -2.91 -0.02 6.18 16 30 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 31 H 0.42 9.77 9.28 -74.05 -0.69 9.08 16 Total: -1.00 -61.20 270.90 4.45 -56.75 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: 0.47 Total: 24.98 kcal Atomic # 6 Polarization: -38.76 SS G_CDS: 3.55 Total: -35.21 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: -0.28 Total: -56.70 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -1.32 Total: -29.09 kcal Atomic # 14 Polarization: 37.24 SS G_CDS: 2.03 Total: 39.27 kcal Total: -61.20 4.45 -56.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642879368.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.942 kcal (2) G-P(sol) polarization free energy of solvation -61.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds