Wall clock time and date at job start Mon Mar 30 2020 03:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35159 * 125.48742 * 2 1 4 4 C 1.40316 * 107.20837 * 179.72186 * 3 2 1 5 5 C 1.37955 * 106.52697 * 0.40349 * 4 3 2 6 6 C 1.41600 * 126.10479 * 179.84863 * 5 4 3 7 7 C 1.35627 * 120.00582 * 219.78927 * 6 5 4 8 8 C 1.41553 * 119.99467 * 8.86097 * 7 6 5 9 9 O 1.21777 * 120.00296 * 6.34975 * 8 7 6 10 10 N 1.34777 * 119.99442 * 186.06691 * 8 7 6 11 11 C 1.46504 * 119.99519 * 180.28041 * 10 8 7 12 12 C 1.50705 * 109.46881 * 180.02562 * 11 10 8 13 13 H 1.07994 * 119.99991 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99745 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99768 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 120.00111 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.46977 * 90.00011 * 16 14 12 18 18 H 1.48496 * 109.46876 * 209.99678 * 16 14 12 19 19 H 1.48500 * 109.47069 * 330.00074 * 16 14 12 20 20 O 1.34026 * 125.48058 * 179.97438 * 2 1 3 21 21 H 1.08992 * 109.47070 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47103 * 300.00783 * 1 2 3 23 23 H 1.09007 * 109.46824 * 60.00137 * 1 2 3 24 24 H 1.08004 * 126.39274 * 359.97438 * 3 2 1 25 25 H 1.07994 * 126.73641 * 180.29301 * 4 3 2 26 26 H 1.08010 * 119.99926 * 39.79488 * 6 5 4 27 27 H 1.07992 * 120.00375 * 188.86135 * 7 6 5 28 28 H 0.96999 * 120.00324 * 0.28316 * 10 8 7 29 29 H 1.09002 * 109.47245 * 299.99593 * 11 10 8 30 30 H 1.09001 * 109.47513 * 60.00132 * 11 10 8 31 31 H 0.97002 * 120.00009 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2916 1.1005 0.0000 4 6 3.6239 0.6604 0.0065 5 6 3.5818 -0.7185 0.0009 6 6 4.6998 -1.5874 0.0014 7 6 4.6842 -2.7132 -0.7547 8 6 3.6382 -2.9269 -1.6842 9 8 2.8172 -2.0511 -1.8890 10 7 3.5542 -4.0976 -2.3468 11 6 2.4752 -4.3164 -3.3133 12 6 2.6069 -5.6942 -3.9096 13 1 3.4137 -6.3418 -3.6000 14 6 1.6971 -6.1279 -4.8506 15 7 1.8122 -7.3301 -5.3713 16 14 0.3010 -5.0080 -5.3856 17 1 0.7382 -4.1923 -6.5469 18 1 -0.8730 -5.8309 -5.7726 19 1 -0.0718 -4.1107 -4.2627 20 8 2.2849 -1.0914 0.0005 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 1.9557 2.1270 -0.0004 25 1 4.5087 1.2796 0.0127 26 1 5.5651 -1.3537 0.6041 27 1 5.4696 -3.4466 -0.6477 28 1 4.2082 -4.7952 -2.1837 29 1 1.5127 -4.2296 -2.8092 30 1 2.5395 -3.5699 -4.1049 31 1 1.1724 -7.6351 -6.0335 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701275880.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:59 Heat of formation + Delta-G solvation = -3.100913 kcal Electronic energy + Delta-G solvation = -16047.117680 eV Core-core repulsion = 13295.977730 eV Total energy + Delta-G solvation = -2751.139950 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.16376 -39.08251 -34.59577 -33.68270 -32.85136 -32.34396 -30.97085 -28.31728 -26.29138 -23.36906 -21.51611 -21.42053 -20.25284 -19.21755 -17.62712 -16.44119 -15.92335 -15.50878 -15.06812 -14.45094 -14.30081 -13.79921 -13.55091 -13.02591 -12.85807 -12.75015 -12.57403 -12.32295 -12.19731 -12.00081 -11.64726 -10.98597 -10.77034 -9.96956 -9.83919 -9.51870 -9.48112 -9.23074 -8.75981 -8.09735 -7.57520 -6.20523 -4.22312 0.82572 2.34377 2.89704 3.26991 3.33555 3.35562 3.42374 3.94576 4.21601 4.34672 4.87883 5.05930 5.15001 5.18156 5.27415 5.48624 5.52771 5.55819 5.81034 5.92624 5.96245 6.18962 6.25102 6.50426 6.78466 6.87631 7.10527 7.28203 7.42281 7.51111 8.16731 8.55312 8.77061 8.99640 9.40166 10.91559 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.031335 B = 0.006524 C = 0.005590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.359341 B = 4290.877028 C = 5007.296310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.007 3.993 3 C -0.227 4.227 4 C -0.189 4.189 5 C 0.019 3.981 6 C -0.019 4.019 7 C -0.186 4.186 8 C 0.519 3.481 9 O -0.543 6.543 10 N -0.699 5.699 11 C 0.221 3.779 12 C -0.543 4.543 13 H 0.079 0.921 14 C 0.077 3.923 15 N -0.893 5.893 16 Si 0.877 3.123 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.261 1.261 20 O -0.127 6.127 21 H 0.075 0.925 22 H 0.080 0.920 23 H 0.084 0.916 24 H 0.142 0.858 25 H 0.145 0.855 26 H 0.151 0.849 27 H 0.135 0.865 28 H 0.396 0.604 29 H 0.025 0.975 30 H 0.020 0.980 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.020 13.590 12.133 18.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.046 4.046 3 C -0.247 4.247 4 C -0.208 4.208 5 C -0.032 4.032 6 C -0.039 4.039 7 C -0.207 4.207 8 C 0.307 3.693 9 O -0.424 6.424 10 N -0.347 5.347 11 C 0.099 3.901 12 C -0.581 4.581 13 H 0.097 0.903 14 C -0.126 4.126 15 N -0.531 5.531 16 Si 0.703 3.297 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.185 1.185 20 O -0.020 6.020 21 H 0.094 0.906 22 H 0.099 0.901 23 H 0.102 0.898 24 H 0.160 0.840 25 H 0.163 0.837 26 H 0.169 0.831 27 H 0.153 0.847 28 H 0.230 0.770 29 H 0.043 0.957 30 H 0.038 0.962 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.223 13.719 11.811 18.239 hybrid contribution -0.191 0.185 -0.490 0.558 sum 2.032 13.904 11.321 18.045 Atomic orbital electron populations 1.20295 0.85803 1.04106 1.02970 1.22530 0.94055 0.84572 1.03478 1.21266 0.92860 0.98878 1.11653 1.22021 0.97879 0.93061 1.07852 1.19500 0.82983 0.93066 1.07626 1.20523 0.94288 0.92178 0.96929 1.22488 1.01114 0.98946 0.98169 1.17190 0.85903 0.83419 0.82762 1.90822 1.42122 1.42912 1.66528 1.46151 1.31460 1.15262 1.41875 1.19458 0.86122 0.97052 0.87479 1.21117 1.14696 0.98262 1.24020 0.90263 1.24796 0.97473 0.95039 0.95317 1.69883 1.36925 1.17626 1.28624 0.86814 0.81985 0.80975 0.79913 1.19885 1.20888 1.18529 1.84267 1.15736 1.33660 1.68361 0.90563 0.90120 0.89778 0.84014 0.83736 0.83128 0.84718 0.77029 0.95732 0.96235 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.41 36.00 0.37 -0.53 16 2 C 0.01 0.11 7.30 -35.41 -0.26 -0.15 16 3 C -0.23 -3.26 10.76 -39.90 -0.43 -3.69 16 4 C -0.19 -2.72 10.90 -38.90 -0.42 -3.14 16 5 C 0.02 0.31 5.32 -38.40 -0.20 0.10 16 6 C -0.02 -0.26 9.95 -39.23 -0.39 -0.65 16 7 C -0.19 -2.76 9.85 -39.25 -0.39 -3.14 16 8 C 0.52 10.46 7.36 -15.00 -0.11 10.35 16 9 O -0.54 -12.75 12.41 -19.72 -0.24 -12.99 16 10 N -0.70 -14.79 5.54 -64.42 -0.36 -15.15 16 11 C 0.22 5.62 4.50 -5.19 -0.02 5.59 16 12 C -0.54 -15.21 9.83 -34.44 -0.34 -15.55 16 13 H 0.08 2.30 7.84 -52.49 -0.41 1.89 16 14 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 15 N -0.89 -26.84 13.96 55.43 0.77 -26.07 16 16 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 17 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 20 O -0.13 -2.37 7.81 -20.18 -0.16 -2.53 16 21 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 22 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.08 0.93 8.14 -51.92 -0.42 0.50 16 24 H 0.14 1.62 8.06 -52.48 -0.42 1.20 16 25 H 0.14 1.64 8.06 -52.49 -0.42 1.21 16 26 H 0.15 1.31 8.06 -52.48 -0.42 0.89 16 27 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 28 H 0.40 7.32 8.28 -40.82 -0.34 6.98 16 29 H 0.02 0.66 7.20 -51.93 -0.37 0.29 16 30 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 31 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 LS Contribution 275.44 15.07 4.15 4.15 Total: -1.00 -34.40 275.44 -6.43 -40.84 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -3.64 Total: 3.27 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -2.29 Total: -8.68 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: 0.42 Total: -41.22 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.40 Total: -15.52 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -34.40 -6.43 -40.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701275880.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.739 kcal (2) G-P(sol) polarization free energy of solvation -34.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds