Wall clock time and date at job start Mon Mar 30 2020 03:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38359 * 120.34921 * 2 1 4 4 N 1.31927 * 121.09554 * 180.02562 * 3 2 1 5 5 C 1.31685 * 121.88475 * 359.74548 * 4 3 2 6 6 C 1.39574 * 120.55786 * 0.54594 * 5 4 3 7 7 C 1.47722 * 120.56641 * 179.72496 * 6 5 4 8 8 O 1.21467 * 120.00046 * 179.71741 * 7 6 5 9 9 O 1.34709 * 119.99876 * 359.44219 * 7 6 5 10 10 C 1.45197 * 116.99896 * 180.27429 * 9 7 6 11 11 H 1.09000 * 109.47353 * 30.00693 * 10 9 7 12 12 C 1.52998 * 109.47309 * 269.99978 * 10 9 7 13 13 C 1.50707 * 109.46838 * 150.00125 * 10 9 7 14 14 H 1.07999 * 119.99727 * 5.46277 * 13 10 9 15 15 C 1.37876 * 119.99753 * 185.46309 * 13 10 9 16 16 N 1.31512 * 120.00159 * 9.54670 * 15 13 10 17 17 Si 1.86800 * 119.99727 * 189.55343 * 15 13 10 18 18 H 1.48501 * 109.47303 * 84.99607 * 17 15 13 19 19 H 1.48499 * 109.46968 * 204.99085 * 17 15 13 20 20 H 1.48498 * 109.47041 * 324.99369 * 17 15 13 21 21 C 1.38342 * 120.34611 * 180.02562 * 2 1 3 22 22 H 1.09003 * 109.46963 * 269.97881 * 1 2 3 23 23 H 1.08998 * 109.46973 * 29.97543 * 1 2 3 24 24 H 1.08998 * 109.47333 * 149.97914 * 1 2 3 25 25 H 1.08006 * 119.45144 * 0.02562 * 3 2 1 26 26 H 1.07995 * 119.72493 * 180.26603 * 5 4 3 27 27 H 1.08998 * 109.47187 * 183.66669 * 12 10 9 28 28 H 1.08999 * 109.47233 * 303.66524 * 12 10 9 29 29 H 1.09000 * 109.46979 * 63.66676 * 12 10 9 30 30 H 0.97004 * 120.00235 * 180.02562 * 16 15 13 31 31 H 1.08005 * 120.85615 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2061 1.1940 0.0000 4 7 3.5252 1.2112 -0.0005 5 6 4.2353 0.1022 0.0039 6 6 3.6058 -1.1435 -0.0021 7 6 4.4022 -2.3877 -0.0032 8 8 3.8437 -3.4663 -0.0032 9 8 5.7479 -2.3260 -0.0098 10 6 6.4656 -3.5882 -0.0167 11 1 5.8690 -4.3426 -0.5296 12 6 6.7249 -4.0353 1.4234 13 6 7.7800 -3.4146 -0.7332 14 1 8.0889 -2.4343 -1.0648 15 6 8.5880 -4.5074 -0.9655 16 7 8.1358 -5.7206 -0.7343 17 14 10.3250 -4.2648 -1.6083 18 1 11.2428 -4.0070 -0.4696 19 1 10.7616 -5.4877 -2.3287 20 1 10.3517 -3.1067 -2.5375 21 6 2.2059 -1.1939 -0.0005 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3633 0.8902 -0.5134 24 1 -0.3634 -0.8898 -0.5141 25 1 1.6628 2.1275 0.0004 26 1 5.3139 0.1569 0.0077 27 1 7.3198 -4.9486 1.4187 28 1 7.2655 -3.2523 1.9552 29 1 5.7742 -4.2235 1.9221 30 1 8.7044 -6.4894 -0.8973 31 1 1.6856 -2.1404 -0.0005 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768778641.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:42 Heat of formation + Delta-G solvation = -65.019116 kcal Electronic energy + Delta-G solvation = -15889.246995 eV Core-core repulsion = 13135.422070 eV Total energy + Delta-G solvation = -2753.824925 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.46834 -39.06231 -35.78564 -33.76969 -33.24238 -32.11637 -29.68583 -27.40895 -25.35674 -24.86729 -22.70807 -21.54265 -19.73242 -17.50802 -16.99057 -16.73211 -15.92815 -15.52612 -15.16113 -14.49306 -14.22243 -13.74863 -13.14509 -13.02682 -12.88137 -12.70632 -12.28741 -12.03805 -11.93360 -11.35883 -11.07015 -10.84608 -10.50544 -10.34626 -10.05820 -9.81522 -9.60939 -9.39011 -9.01552 -8.97594 -8.50371 -6.22402 -4.26503 0.65986 1.16213 3.02086 3.25071 3.29570 3.32259 3.49035 3.89517 4.30715 4.41512 4.62393 4.81968 4.89917 4.95099 5.11856 5.35693 5.38150 5.55157 5.62281 5.82618 6.06925 6.17893 6.54252 6.57668 6.78549 6.81506 7.03021 7.51141 7.62179 7.80160 7.85287 8.07407 8.53629 8.84482 9.37770 10.86961 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.046342 B = 0.005460 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.058621 B = 5126.816382 C = 5477.816948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.155 4.155 3 C 0.118 3.882 4 N -0.490 5.490 5 C 0.150 3.850 6 C -0.159 4.159 7 C 0.500 3.500 8 O -0.514 6.514 9 O -0.349 6.349 10 C 0.214 3.786 11 H 0.055 0.945 12 C -0.149 4.149 13 C -0.525 4.525 14 H 0.070 0.930 15 C 0.065 3.935 16 N -0.886 5.886 17 Si 0.909 3.091 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.271 1.271 21 C -0.021 4.021 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.158 0.842 26 H 0.175 0.825 27 H 0.083 0.917 28 H 0.040 0.960 29 H 0.021 0.979 30 H 0.267 0.733 31 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.734 10.481 2.000 15.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.157 4.157 3 C -0.039 4.039 4 N -0.198 5.198 5 C -0.007 4.007 6 C -0.162 4.162 7 C 0.344 3.656 8 O -0.405 6.405 9 O -0.265 6.265 10 C 0.162 3.838 11 H 0.073 0.927 12 C -0.207 4.207 13 C -0.563 4.563 14 H 0.088 0.912 15 C -0.137 4.137 16 N -0.523 5.523 17 Si 0.736 3.264 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.196 1.196 21 C -0.046 4.046 22 H 0.092 0.908 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.175 0.825 26 H 0.192 0.808 27 H 0.102 0.898 28 H 0.059 0.941 29 H 0.040 0.960 30 H 0.077 0.923 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.340 10.737 1.983 15.742 hybrid contribution 0.493 -1.026 -0.278 1.172 sum -10.848 9.710 1.705 14.659 Atomic orbital electron populations 1.20701 0.89719 1.03281 1.02710 1.20864 0.97862 0.93673 1.03268 1.22913 0.90193 0.97494 0.93262 1.67795 1.07822 1.31167 1.12970 1.23325 1.01298 0.86158 0.89925 1.20494 0.94032 0.94011 1.07695 1.20760 0.83342 0.87979 0.73566 1.90773 1.72825 1.30508 1.46347 1.86532 1.16644 1.41754 1.81540 1.20712 0.90698 0.77957 0.94472 0.92740 1.22092 0.99246 1.02249 0.97143 1.20966 1.01760 0.95236 1.38325 0.91164 1.24896 0.99124 0.94577 0.95152 1.69986 1.36436 0.97870 1.48031 0.86331 0.83347 0.77766 0.78973 1.20197 1.21063 1.19606 1.21657 0.92311 0.99128 0.91550 0.90827 0.91059 0.91096 0.82494 0.80792 0.89824 0.94054 0.96006 0.92337 0.83549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.03 36.00 0.36 -0.44 16 2 C -0.15 -1.73 5.89 -104.54 -0.62 -2.35 16 3 C 0.12 1.36 10.85 -17.47 -0.19 1.17 16 4 N -0.49 -7.03 10.35 -12.90 -0.13 -7.16 16 5 C 0.15 2.35 10.79 -17.12 -0.18 2.17 16 6 C -0.16 -2.70 5.89 -104.83 -0.62 -3.31 16 7 C 0.50 10.72 7.88 34.61 0.27 10.99 16 8 O -0.51 -12.21 15.68 -19.24 -0.30 -12.51 16 9 O -0.35 -8.24 9.14 -40.52 -0.37 -8.61 16 10 C 0.21 5.71 2.43 -27.88 -0.07 5.64 16 11 H 0.05 1.62 7.10 -51.93 -0.37 1.25 16 12 C -0.15 -3.70 9.43 37.16 0.35 -3.35 16 13 C -0.53 -14.64 8.82 -34.44 -0.30 -14.94 16 14 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 15 C 0.07 1.80 5.17 -17.82 -0.09 1.71 16 16 N -0.89 -25.29 12.16 55.43 0.67 -24.61 16 17 Si 0.91 20.98 29.55 -169.99 -5.02 15.95 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 21 C -0.02 -0.29 9.39 -38.85 -0.36 -0.66 16 22 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 24 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 25 H 0.16 1.25 8.06 -52.48 -0.42 0.83 16 26 H 0.18 2.66 7.62 -52.49 -0.40 2.26 16 27 H 0.08 2.19 6.83 -51.93 -0.35 1.84 16 28 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.15 1.97 7.74 -52.48 -0.41 1.57 16 LS Contribution 278.87 15.07 4.20 4.20 Total: -1.00 -31.01 278.87 -6.01 -37.02 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -3.61 Total: -0.91 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -1.45 Total: -3.38 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: 0.54 Total: -31.77 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.67 Total: -21.12 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.01 -6.01 -37.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768778641.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.998 kcal (2) G-P(sol) polarization free energy of solvation -31.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds