Wall clock time and date at job start Mon Mar 30 2020 03:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31682 * 119.72320 * 2 1 4 4 C 1.31924 * 121.88931 * 179.97438 * 3 2 1 5 5 C 1.38370 * 121.08790 * 359.97438 * 4 3 2 6 6 C 1.38336 * 119.30670 * 0.02562 * 5 4 3 7 7 C 1.39573 * 119.71862 * 180.22524 * 2 1 3 8 8 C 1.47724 * 120.56339 * 0.03184 * 7 2 1 9 9 O 1.21469 * 120.00161 * 6.46141 * 8 7 2 10 10 O 1.34717 * 119.99510 * 186.45718 * 8 7 2 11 11 C 1.45205 * 116.99552 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.47083 * 30.00450 * 11 10 8 13 13 C 1.52992 * 109.47147 * 270.00366 * 11 10 8 14 14 C 1.50701 * 109.46642 * 150.00152 * 11 10 8 15 15 H 1.07992 * 120.00386 * 0.02562 * 14 11 10 16 16 C 1.37886 * 119.99659 * 179.97438 * 14 11 10 17 17 N 1.31515 * 120.00002 * 0.02562 * 16 14 11 18 18 Si 1.86793 * 119.99789 * 180.02562 * 16 14 11 19 19 H 1.48506 * 109.47120 * 60.00282 * 18 16 14 20 20 H 1.48501 * 109.46969 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47352 * 300.00244 * 18 16 14 22 22 H 1.09009 * 109.46916 * 96.55187 * 1 2 3 23 23 H 1.08999 * 109.47608 * 216.54907 * 1 2 3 24 24 H 1.09001 * 109.47182 * 336.56142 * 1 2 3 25 25 H 1.08004 * 119.45756 * 179.97438 * 4 3 2 26 26 H 1.07994 * 120.34076 * 179.97438 * 5 4 3 27 27 H 1.08007 * 120.85731 * 179.97438 * 6 5 4 28 28 H 1.09001 * 109.47307 * 180.02562 * 13 11 10 29 29 H 1.09004 * 109.47198 * 300.00014 * 13 11 10 30 30 H 1.08999 * 109.47700 * 60.00297 * 13 11 10 31 31 H 0.96998 * 119.99990 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1599 1.1436 0.0000 4 6 3.4782 1.1934 0.0005 5 6 4.2370 0.0363 0.0016 6 6 3.5995 -1.1914 0.0016 7 6 2.1990 -1.2121 -0.0048 8 6 1.4666 -2.4951 -0.0105 9 8 0.2578 -2.5039 -0.1295 10 8 2.1396 -3.6552 0.1161 11 6 1.3551 -4.8771 0.1027 12 1 0.4652 -4.7308 -0.5096 13 6 0.9385 -5.2314 1.5315 14 6 2.1817 -5.9983 -0.4724 15 1 3.1952 -5.8115 -0.7950 16 6 1.6442 -7.2630 -0.5857 17 7 0.4101 -7.4907 -0.1923 18 14 2.6690 -8.6529 -1.2977 19 1 3.8814 -8.8518 -0.4634 20 1 1.8668 -9.9025 -1.3117 21 1 3.0735 -8.3095 -2.6847 22 1 -0.3633 -0.1173 -1.0210 23 1 -0.3634 -0.8255 0.6120 24 1 -0.3633 0.9429 0.4088 25 1 3.9734 2.1532 0.0001 26 1 5.3155 0.0912 0.0016 27 1 4.1671 -2.1103 0.0020 28 1 0.3500 -6.1489 1.5214 29 1 1.8284 -5.3778 2.1437 30 1 0.3406 -4.4205 1.9474 31 1 0.0321 -8.3805 -0.2717 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768781121.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:17 Heat of formation + Delta-G solvation = -57.126962 kcal Electronic energy + Delta-G solvation = -16173.851114 eV Core-core repulsion = 13420.368418 eV Total energy + Delta-G solvation = -2753.482696 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.53693 -38.98814 -35.86454 -33.42874 -32.83377 -32.31996 -29.61804 -27.70871 -25.36756 -24.66771 -22.43178 -21.53911 -19.94090 -17.47917 -16.90160 -16.38812 -15.78539 -15.65243 -15.30165 -14.62653 -14.06440 -13.87512 -13.06552 -12.99560 -12.45459 -12.28790 -12.10771 -12.07247 -11.71709 -11.28062 -11.07597 -10.86779 -10.42984 -10.30754 -9.86494 -9.81092 -9.60186 -9.35051 -9.00020 -8.93891 -8.52529 -6.21947 -4.29294 0.69561 1.22128 3.05194 3.23889 3.27206 3.29130 3.51931 3.88547 4.26611 4.33213 4.76386 4.84448 4.95731 5.11031 5.22428 5.54248 5.71165 5.85553 5.92050 6.05833 6.18784 6.34200 6.55944 6.67604 6.85315 6.86942 7.10496 7.54614 7.67810 7.87243 7.88809 8.08950 8.54782 8.81750 9.36124 10.85437 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.040476 B = 0.006126 C = 0.005563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.597903 B = 4569.871072 C = 5031.995413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.187 3.813 3 N -0.496 5.496 4 C 0.124 3.876 5 C -0.197 4.197 6 C -0.016 4.016 7 C -0.169 4.169 8 C 0.500 3.500 9 O -0.507 6.507 10 O -0.351 6.351 11 C 0.217 3.783 12 H 0.049 0.951 13 C -0.155 4.155 14 C -0.523 4.523 15 H 0.068 0.932 16 C 0.063 3.937 17 N -0.888 5.888 18 Si 0.913 3.087 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.274 1.274 22 H 0.084 0.916 23 H 0.103 0.897 24 H 0.068 0.932 25 H 0.159 0.841 26 H 0.140 0.860 27 H 0.152 0.848 28 H 0.100 0.900 29 H 0.037 0.963 30 H 0.016 0.984 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.541 12.465 1.034 13.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.049 3.951 3 N -0.206 5.206 4 C -0.033 4.033 5 C -0.217 4.217 6 C -0.042 4.042 7 C -0.173 4.173 8 C 0.344 3.656 9 O -0.399 6.399 10 O -0.267 6.267 11 C 0.164 3.836 12 H 0.066 0.934 13 C -0.213 4.213 14 C -0.561 4.561 15 H 0.086 0.914 16 C -0.139 4.139 17 N -0.526 5.526 18 Si 0.739 3.261 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.200 1.200 22 H 0.103 0.897 23 H 0.121 0.879 24 H 0.087 0.913 25 H 0.176 0.824 26 H 0.158 0.842 27 H 0.170 0.830 28 H 0.119 0.881 29 H 0.056 0.944 30 H 0.036 0.964 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.567 13.009 1.019 13.825 hybrid contribution 1.021 -1.594 -0.348 1.925 sum 5.587 11.414 0.671 12.726 Atomic orbital electron populations 1.21076 0.87514 1.03787 1.04408 1.21551 0.97661 0.86476 0.89367 1.67666 1.09983 1.28379 1.14539 1.22968 0.89517 0.98696 0.92161 1.22114 1.01783 0.93034 1.04725 1.22039 0.93281 0.99423 0.89448 1.20293 0.94597 0.92956 1.09416 1.20731 0.85896 0.85240 0.73782 1.90726 1.15038 1.87958 1.46153 1.86534 1.43539 1.15585 1.81055 1.20684 0.91740 0.76155 0.94975 0.93363 1.22170 1.00098 1.02188 0.96826 1.20971 1.00386 0.92487 1.42271 0.91364 1.24882 0.95283 0.98515 0.95216 1.69884 1.13711 1.22649 1.46354 0.86320 0.79788 0.80342 0.79604 1.19928 1.20983 1.19984 0.89749 0.87890 0.91286 0.82393 0.84167 0.83011 0.88147 0.94423 0.96441 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.67 8.86 36.01 0.32 -1.35 16 2 C 0.19 3.00 6.82 -82.16 -0.56 2.44 16 3 N -0.50 -7.20 10.26 -9.13 -0.09 -7.30 16 4 C 0.12 1.42 11.17 -17.46 -0.20 1.23 16 5 C -0.20 -2.20 10.10 -39.50 -0.40 -2.60 16 6 C -0.02 -0.23 9.74 -38.86 -0.38 -0.61 16 7 C -0.17 -2.92 5.89 -104.84 -0.62 -3.54 16 8 C 0.50 10.59 7.80 34.61 0.27 10.86 16 9 O -0.51 -11.55 12.65 -19.24 -0.24 -11.79 16 10 O -0.35 -8.25 9.21 -40.54 -0.37 -8.63 16 11 C 0.22 5.74 2.56 -27.89 -0.07 5.67 16 12 H 0.05 1.41 7.16 -51.93 -0.37 1.03 16 13 C -0.16 -3.89 9.33 37.15 0.35 -3.54 16 14 C -0.52 -14.48 8.90 -34.44 -0.31 -14.79 16 15 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 16 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 17 N -0.89 -24.95 11.32 55.43 0.63 -24.33 16 18 Si 0.91 20.82 29.54 -169.99 -5.02 15.80 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 H 0.08 1.25 8.14 -51.92 -0.42 0.82 16 23 H 0.10 1.72 5.88 -51.93 -0.31 1.42 16 24 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.16 1.22 8.06 -52.48 -0.42 0.79 16 26 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 27 H 0.15 2.09 7.72 -52.48 -0.41 1.69 16 28 H 0.10 2.68 6.07 -51.93 -0.32 2.37 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 272.40 15.07 4.11 4.11 Total: -1.00 -30.19 272.40 -6.16 -36.35 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -3.48 Total: 0.38 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -1.69 Total: -4.60 kcal Atomic # 7 Polarization: -32.16 SS G_CDS: 0.53 Total: -31.62 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.62 Total: -20.42 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.19 -6.16 -36.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768781121.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.773 kcal (2) G-P(sol) polarization free energy of solvation -30.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds