Wall clock time and date at job start Mon Mar 30 2020 03:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31682 * 119.72320 * 2 1 4 4 C 1.31924 * 121.88931 * 179.97438 * 3 2 1 5 5 C 1.38370 * 121.08790 * 359.97438 * 4 3 2 6 6 C 1.38336 * 119.30670 * 0.02562 * 5 4 3 7 7 C 1.39573 * 119.71862 * 180.22524 * 2 1 3 8 8 C 1.47724 * 120.56339 * 0.03184 * 7 2 1 9 9 O 1.21469 * 120.00161 * 6.46141 * 8 7 2 10 10 O 1.34717 * 119.99510 * 186.45718 * 8 7 2 11 11 C 1.45205 * 116.99552 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.47083 * 30.00450 * 11 10 8 13 13 C 1.52992 * 109.47147 * 270.00366 * 11 10 8 14 14 C 1.50701 * 109.46642 * 150.00152 * 11 10 8 15 15 H 1.07992 * 120.00386 * 0.02562 * 14 11 10 16 16 C 1.37886 * 119.99659 * 179.97438 * 14 11 10 17 17 N 1.31515 * 120.00002 * 0.02562 * 16 14 11 18 18 Si 1.86793 * 119.99789 * 180.02562 * 16 14 11 19 19 H 1.48506 * 109.47120 * 60.00282 * 18 16 14 20 20 H 1.48501 * 109.46969 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47352 * 300.00244 * 18 16 14 22 22 H 1.09009 * 109.46916 * 96.55187 * 1 2 3 23 23 H 1.08999 * 109.47608 * 216.54907 * 1 2 3 24 24 H 1.09001 * 109.47182 * 336.56142 * 1 2 3 25 25 H 1.08004 * 119.45756 * 179.97438 * 4 3 2 26 26 H 1.07994 * 120.34076 * 179.97438 * 5 4 3 27 27 H 1.08007 * 120.85731 * 179.97438 * 6 5 4 28 28 H 1.09001 * 109.47307 * 180.02562 * 13 11 10 29 29 H 1.09004 * 109.47198 * 300.00014 * 13 11 10 30 30 H 1.08999 * 109.47700 * 60.00297 * 13 11 10 31 31 H 0.96998 * 119.99990 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1599 1.1436 0.0000 4 6 3.4782 1.1934 0.0005 5 6 4.2370 0.0363 0.0016 6 6 3.5995 -1.1914 0.0016 7 6 2.1990 -1.2121 -0.0048 8 6 1.4666 -2.4951 -0.0105 9 8 0.2578 -2.5039 -0.1295 10 8 2.1396 -3.6552 0.1161 11 6 1.3551 -4.8771 0.1027 12 1 0.4652 -4.7308 -0.5096 13 6 0.9385 -5.2314 1.5315 14 6 2.1817 -5.9983 -0.4724 15 1 3.1952 -5.8115 -0.7950 16 6 1.6442 -7.2630 -0.5857 17 7 0.4101 -7.4907 -0.1923 18 14 2.6690 -8.6529 -1.2977 19 1 3.8814 -8.8518 -0.4634 20 1 1.8668 -9.9025 -1.3117 21 1 3.0735 -8.3095 -2.6847 22 1 -0.3633 -0.1173 -1.0210 23 1 -0.3634 -0.8255 0.6120 24 1 -0.3633 0.9429 0.4088 25 1 3.9734 2.1532 0.0001 26 1 5.3155 0.0912 0.0016 27 1 4.1671 -2.1103 0.0020 28 1 0.3500 -6.1489 1.5214 29 1 1.8284 -5.3778 2.1437 30 1 0.3406 -4.4205 1.9474 31 1 0.0321 -8.3805 -0.2717 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768781121.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:17 Heat of formation + Delta-G solvation = -75.253960 kcal Electronic energy + Delta-G solvation = -16174.637160 eV Core-core repulsion = 13420.368418 eV Total energy + Delta-G solvation = -2754.268741 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.87081 -40.51189 -37.67047 -35.39238 -34.00863 -33.55591 -31.62547 -28.90213 -27.47165 -25.95852 -23.89569 -22.93361 -21.69903 -19.15203 -18.61032 -17.77043 -17.28108 -17.01542 -16.94154 -16.44609 -15.37266 -15.21300 -14.66063 -14.27403 -14.07062 -13.92755 -13.52091 -13.37997 -13.22728 -13.12956 -12.86215 -12.77848 -12.40299 -12.16997 -11.60556 -11.27962 -11.03477 -10.99376 -10.61844 -10.57872 -10.07070 -8.29564 -6.46803 -0.48932 0.15088 1.41758 1.45697 1.53534 1.56098 1.87963 2.39958 2.72037 3.01310 3.25355 3.60514 3.76923 3.88617 4.05725 4.42086 4.53860 4.55310 4.68464 4.69846 4.76802 4.80975 5.03497 5.07325 5.09018 5.22891 5.46402 5.58124 5.63029 5.88480 6.03998 6.57033 6.81128 6.88311 7.24558 8.78045 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.040476 B = 0.006126 C = 0.005563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.597903 B = 4569.871072 C = 5031.995413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.178 3.822 3 N -0.508 5.508 4 C 0.135 3.865 5 C -0.176 4.176 6 C -0.024 4.024 7 C -0.199 4.199 8 C 0.493 3.507 9 O -0.534 6.534 10 O -0.356 6.356 11 C 0.219 3.781 12 H 0.010 0.990 13 C -0.142 4.142 14 C -0.550 4.550 15 H 0.069 0.931 16 C 0.017 3.983 17 N -0.917 5.917 18 Si 0.984 3.016 19 H -0.263 1.263 20 H -0.278 1.278 21 H -0.269 1.269 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.089 0.911 25 H 0.207 0.793 26 H 0.186 0.814 27 H 0.153 0.847 28 H 0.082 0.918 29 H 0.045 0.955 30 H 0.023 0.977 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.117 13.750 0.874 15.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.041 3.959 3 N -0.218 5.218 4 C -0.022 4.022 5 C -0.195 4.195 6 C -0.049 4.049 7 C -0.202 4.202 8 C 0.340 3.660 9 O -0.426 6.426 10 O -0.272 6.272 11 C 0.166 3.834 12 H 0.028 0.972 13 C -0.200 4.200 14 C -0.587 4.587 15 H 0.087 0.913 16 C -0.183 4.183 17 N -0.554 5.554 18 Si 0.807 3.193 19 H -0.187 1.187 20 H -0.203 1.203 21 H -0.194 1.194 22 H 0.098 0.902 23 H 0.098 0.902 24 H 0.108 0.892 25 H 0.223 0.777 26 H 0.203 0.797 27 H 0.170 0.830 28 H 0.101 0.899 29 H 0.064 0.936 30 H 0.042 0.958 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.143 14.317 0.866 16.023 hybrid contribution 0.265 -1.823 -0.294 1.865 sum 7.408 12.494 0.571 14.536 Atomic orbital electron populations 1.20973 0.87789 1.03840 1.03810 1.21562 0.97902 0.86632 0.89788 1.67754 1.11753 1.27112 1.15162 1.23842 0.88458 1.00904 0.88988 1.22566 1.03921 0.91173 1.01853 1.22213 0.91979 1.01231 0.89514 1.20139 0.95918 0.90893 1.13282 1.21528 0.86038 0.85761 0.72719 1.90709 1.16277 1.88255 1.47386 1.86511 1.43237 1.15679 1.81798 1.20391 0.90681 0.77470 0.94863 0.97243 1.21991 1.00165 1.01466 0.96378 1.21260 1.00657 0.93417 1.43406 0.91271 1.25834 0.96415 1.00930 0.95099 1.70009 1.15238 1.23445 1.46731 0.85221 0.78334 0.76827 0.78961 1.18726 1.20252 1.19361 0.90151 0.90245 0.89222 0.77662 0.79665 0.82967 0.89922 0.93555 0.95788 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.31 8.86 71.24 0.63 -2.67 16 2 C 0.18 5.63 6.82 42.90 0.29 5.93 16 3 N -0.51 -13.46 10.26 -182.79 -1.88 -15.33 16 4 C 0.13 2.49 11.17 84.71 0.95 3.44 16 5 C -0.18 -3.18 10.10 22.32 0.23 -2.95 16 6 C -0.02 -0.64 9.74 22.74 0.22 -0.42 16 7 C -0.20 -6.89 5.89 -20.00 -0.12 -7.01 16 8 C 0.49 21.85 7.80 70.33 0.55 22.40 16 9 O -0.53 -25.82 12.65 19.94 0.25 -25.57 16 10 O -0.36 -17.36 9.21 -56.27 -0.52 -17.88 16 11 C 0.22 12.11 2.56 29.85 0.08 12.18 16 12 H 0.01 0.60 7.16 -2.38 -0.02 0.58 16 13 C -0.14 -7.38 9.33 71.98 0.67 -6.71 16 14 C -0.55 -31.08 8.90 25.60 0.23 -30.85 16 15 H 0.07 3.79 7.81 -2.91 -0.02 3.77 16 16 C 0.02 0.94 5.30 84.66 0.45 1.39 16 17 N -0.92 -52.49 11.32 21.45 0.24 -52.25 16 18 Si 0.98 42.45 29.54 68.60 2.03 44.48 16 19 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 20 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 21 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 22 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 23 H 0.08 2.82 5.88 -2.39 -0.01 2.80 16 24 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.21 1.83 8.06 -2.91 -0.02 1.81 16 26 H 0.19 1.72 8.06 -2.91 -0.02 1.69 16 27 H 0.15 4.03 7.72 -2.91 -0.02 4.01 16 28 H 0.08 4.58 6.07 -2.39 -0.01 4.56 16 29 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 30 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -67.73 272.40 5.44 -62.29 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 1.13 Total: 9.54 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 4.17 Total: -5.28 kcal Atomic # 7 Polarization: -65.95 SS G_CDS: -1.63 Total: -67.58 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -0.27 Total: -43.44 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -67.73 5.44 -62.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768781121.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.960 kcal (2) G-P(sol) polarization free energy of solvation -67.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds