Wall clock time and date at job start Mon Mar 30 2020 03:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31690 * 119.71794 * 2 1 4 4 C 1.31929 * 121.88442 * 180.31103 * 3 2 1 5 5 C 1.38362 * 121.08999 * 359.65965 * 4 3 2 6 6 C 1.38335 * 119.31175 * 0.02562 * 5 4 3 7 7 C 1.39569 * 119.72311 * 179.68546 * 2 1 3 8 8 C 1.47713 * 120.56507 * 0.02562 * 7 2 1 9 9 O 1.21477 * 119.99973 * 353.51031 * 8 7 2 10 10 O 1.34713 * 120.00234 * 173.79241 * 8 7 2 11 11 C 1.45195 * 117.00134 * 179.72628 * 10 8 7 12 12 H 1.09000 * 109.47153 * 329.99394 * 11 10 8 13 13 C 1.52998 * 109.47740 * 89.99654 * 11 10 8 14 14 C 1.50702 * 109.46944 * 209.99701 * 11 10 8 15 15 H 1.07992 * 120.00102 * 359.97438 * 14 11 10 16 16 C 1.37879 * 120.00135 * 179.97438 * 14 11 10 17 17 N 1.31512 * 120.00564 * 180.02562 * 16 14 11 18 18 Si 1.86808 * 119.99848 * 0.02562 * 16 14 11 19 19 H 1.48495 * 109.47299 * 89.99688 * 18 16 14 20 20 H 1.48501 * 109.46743 * 209.99899 * 18 16 14 21 21 H 1.48501 * 109.47096 * 329.99344 * 18 16 14 22 22 H 1.09001 * 109.47064 * 263.74861 * 1 2 3 23 23 H 1.08995 * 109.47529 * 23.75651 * 1 2 3 24 24 H 1.09004 * 109.46693 * 143.75232 * 1 2 3 25 25 H 1.07998 * 119.45435 * 179.67494 * 4 3 2 26 26 H 1.08004 * 120.34309 * 179.97438 * 5 4 3 27 27 H 1.08000 * 120.86301 * 180.02562 * 6 5 4 28 28 H 1.09005 * 109.47092 * 300.00170 * 13 11 10 29 29 H 1.09000 * 109.47010 * 59.99652 * 13 11 10 30 30 H 1.08998 * 109.47329 * 179.97438 * 13 11 10 31 31 H 0.97000 * 120.00639 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1437 0.0000 4 6 3.4782 1.1936 -0.0061 5 6 4.2369 0.0366 -0.0057 6 6 3.5997 -1.1912 0.0006 7 6 2.1990 -1.2120 0.0067 8 6 1.4669 -2.4950 0.0131 9 8 0.2579 -2.5038 0.1316 10 8 2.1404 -3.6555 -0.1066 11 6 1.3567 -4.8776 -0.0862 12 1 0.4666 -4.7283 0.5251 13 6 0.9404 -5.2407 -1.5129 14 6 2.1838 -5.9950 0.4955 15 1 3.1972 -5.8057 0.8171 16 6 1.6467 -7.2591 0.6170 17 7 2.3683 -8.2342 1.1251 18 14 -0.1060 -7.5867 0.0600 19 1 -0.1035 -7.9949 -1.3677 20 1 -0.6924 -8.6736 0.8847 21 1 -0.9154 -6.3521 0.2205 22 1 -0.3633 -0.1119 1.0216 23 1 -0.3634 0.9405 -0.4140 24 1 -0.3633 -0.8288 -0.6077 25 1 3.9733 2.1534 -0.0112 26 1 5.3156 0.0915 -0.0112 27 1 4.1673 -2.1100 0.0014 28 1 0.3421 -4.4324 -1.9337 29 1 1.8304 -5.3900 -2.1242 30 1 0.3525 -6.1584 -1.4975 31 1 1.9906 -9.1235 1.2103 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768781122.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:19 Heat of formation + Delta-G solvation = -47.305243 kcal Electronic energy + Delta-G solvation = -16241.219523 eV Core-core repulsion = 13488.162729 eV Total energy + Delta-G solvation = -2753.056794 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.65118 -39.18541 -36.10177 -33.42629 -32.88191 -32.40717 -30.61582 -27.83115 -25.35778 -24.76767 -22.55539 -21.64880 -20.07313 -17.74575 -16.93132 -16.51682 -16.06064 -15.82920 -15.54497 -14.77135 -14.19111 -13.87834 -13.17007 -13.04997 -12.81248 -12.46268 -12.34712 -12.26781 -12.14390 -11.78286 -11.54675 -10.93558 -10.28006 -10.00316 -9.90814 -9.85530 -9.77357 -9.43013 -9.18394 -9.05411 -8.73220 -6.27176 -4.30161 0.60756 1.16172 2.90171 3.15490 3.27676 3.28681 3.31814 3.79172 4.22419 4.22686 4.69122 4.78321 4.88185 5.03829 5.11647 5.47553 5.53111 5.76031 5.83054 5.98983 6.08887 6.10052 6.22872 6.26363 6.34367 6.50706 6.61755 6.96743 7.27736 7.44177 7.81836 8.14210 8.49647 8.78586 9.29415 10.84804 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.042716 B = 0.006533 C = 0.005909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.339071 B = 4285.042843 C = 4737.738205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.188 3.812 3 N -0.496 5.496 4 C 0.126 3.874 5 C -0.196 4.196 6 C -0.014 4.014 7 C -0.172 4.172 8 C 0.501 3.499 9 O -0.509 6.509 10 O -0.336 6.336 11 C 0.192 3.808 12 H 0.048 0.952 13 C -0.170 4.170 14 C -0.527 4.527 15 H 0.087 0.913 16 C 0.081 3.919 17 N -0.887 5.887 18 Si 0.879 3.121 19 H -0.273 1.273 20 H -0.289 1.289 21 H -0.262 1.262 22 H 0.084 0.916 23 H 0.069 0.931 24 H 0.102 0.898 25 H 0.160 0.840 26 H 0.142 0.858 27 H 0.154 0.846 28 H 0.038 0.962 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.040 15.097 -3.465 15.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.051 3.949 3 N -0.206 5.206 4 C -0.031 4.031 5 C -0.216 4.216 6 C -0.040 4.040 7 C -0.175 4.175 8 C 0.346 3.654 9 O -0.400 6.400 10 O -0.251 6.251 11 C 0.138 3.862 12 H 0.066 0.934 13 C -0.228 4.228 14 C -0.564 4.564 15 H 0.105 0.895 16 C -0.123 4.123 17 N -0.524 5.524 18 Si 0.708 3.292 19 H -0.200 1.200 20 H -0.216 1.216 21 H -0.186 1.186 22 H 0.103 0.897 23 H 0.088 0.912 24 H 0.120 0.880 25 H 0.177 0.823 26 H 0.160 0.840 27 H 0.172 0.828 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.227 15.598 -3.372 15.960 hybrid contribution -0.300 -1.205 -0.280 1.273 sum -0.073 14.393 -3.651 14.849 Atomic orbital electron populations 1.21080 0.87546 1.03833 1.04391 1.21539 0.97634 0.86457 0.89293 1.67682 1.10021 1.28279 1.14578 1.22993 0.89479 0.98772 0.91840 1.22134 1.01906 0.92969 1.04546 1.22070 0.93203 0.99577 0.89122 1.20203 0.94622 0.92620 1.10068 1.20813 0.85891 0.85237 0.73494 1.90727 1.15061 1.87958 1.46295 1.86554 1.42427 1.14891 1.81261 1.20972 0.92569 0.78751 0.93859 0.93424 1.22532 1.00970 1.00028 0.99228 1.20759 1.01997 0.91463 1.42218 0.89489 1.24724 0.97676 0.95437 0.94453 1.69829 1.36897 1.01766 1.43906 0.86971 0.85208 0.78579 0.78436 1.19961 1.21625 1.18648 0.89714 0.91199 0.87971 0.82293 0.84020 0.82836 0.94337 0.91754 0.92436 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 8.87 36.01 0.32 -1.26 16 2 C 0.19 2.87 6.82 -82.16 -0.56 2.31 16 3 N -0.50 -6.89 10.26 -9.13 -0.09 -6.99 16 4 C 0.13 1.38 11.17 -17.46 -0.20 1.19 16 5 C -0.20 -2.10 10.10 -39.50 -0.40 -2.50 16 6 C -0.01 -0.19 9.74 -38.85 -0.38 -0.57 16 7 C -0.17 -2.82 5.89 -104.84 -0.62 -3.44 16 8 C 0.50 10.02 7.80 34.60 0.27 10.29 16 9 O -0.51 -10.80 12.64 -19.25 -0.24 -11.04 16 10 O -0.34 -7.51 9.21 -40.53 -0.37 -7.88 16 11 C 0.19 4.76 2.16 -27.88 -0.06 4.70 16 12 H 0.05 1.24 6.22 -51.93 -0.32 0.92 16 13 C -0.17 -3.81 9.03 37.16 0.34 -3.47 16 14 C -0.53 -14.84 9.48 -34.44 -0.33 -15.16 16 15 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 16 C 0.08 2.28 5.45 -17.82 -0.10 2.18 16 17 N -0.89 -26.35 13.96 55.43 0.77 -25.58 16 18 Si 0.88 21.34 24.37 -169.99 -4.14 17.19 16 19 H -0.27 -6.35 6.87 56.52 0.39 -5.96 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.26 -6.24 6.53 56.52 0.37 -5.87 16 22 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 23 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.10 1.59 5.86 -51.93 -0.30 1.28 16 25 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 26 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 27 H 0.15 2.05 7.72 -52.49 -0.40 1.65 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.06 1.31 3.27 -51.93 -0.17 1.14 16 31 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 265.57 15.07 4.00 4.00 Total: -1.00 -31.13 265.57 -5.13 -36.26 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -3.34 Total: -0.23 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -1.71 Total: -5.74 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: 0.68 Total: -32.56 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.62 Total: -18.92 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.14 Total: 17.19 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.13 -5.13 -36.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768781122.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.050 kcal (2) G-P(sol) polarization free energy of solvation -31.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds