Wall clock time and date at job start Mon Mar 30 2020 03:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31690 * 119.71794 * 2 1 4 4 C 1.31929 * 121.88442 * 180.31103 * 3 2 1 5 5 C 1.38362 * 121.08999 * 359.65965 * 4 3 2 6 6 C 1.38335 * 119.31175 * 0.02562 * 5 4 3 7 7 C 1.39569 * 119.72311 * 179.68546 * 2 1 3 8 8 C 1.47713 * 120.56507 * 0.02562 * 7 2 1 9 9 O 1.21477 * 119.99973 * 353.51031 * 8 7 2 10 10 O 1.34713 * 120.00234 * 173.79241 * 8 7 2 11 11 C 1.45195 * 117.00134 * 179.72628 * 10 8 7 12 12 H 1.09000 * 109.47153 * 329.99394 * 11 10 8 13 13 C 1.52998 * 109.47740 * 89.99654 * 11 10 8 14 14 C 1.50702 * 109.46944 * 209.99701 * 11 10 8 15 15 H 1.07992 * 120.00102 * 359.97438 * 14 11 10 16 16 C 1.37879 * 120.00135 * 179.97438 * 14 11 10 17 17 N 1.31512 * 120.00564 * 180.02562 * 16 14 11 18 18 Si 1.86808 * 119.99848 * 0.02562 * 16 14 11 19 19 H 1.48495 * 109.47299 * 89.99688 * 18 16 14 20 20 H 1.48501 * 109.46743 * 209.99899 * 18 16 14 21 21 H 1.48501 * 109.47096 * 329.99344 * 18 16 14 22 22 H 1.09001 * 109.47064 * 263.74861 * 1 2 3 23 23 H 1.08995 * 109.47529 * 23.75651 * 1 2 3 24 24 H 1.09004 * 109.46693 * 143.75232 * 1 2 3 25 25 H 1.07998 * 119.45435 * 179.67494 * 4 3 2 26 26 H 1.08004 * 120.34309 * 179.97438 * 5 4 3 27 27 H 1.08000 * 120.86301 * 180.02562 * 6 5 4 28 28 H 1.09005 * 109.47092 * 300.00170 * 13 11 10 29 29 H 1.09000 * 109.47010 * 59.99652 * 13 11 10 30 30 H 1.08998 * 109.47329 * 179.97438 * 13 11 10 31 31 H 0.97000 * 120.00639 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1437 0.0000 4 6 3.4782 1.1936 -0.0061 5 6 4.2369 0.0366 -0.0057 6 6 3.5997 -1.1912 0.0006 7 6 2.1990 -1.2120 0.0067 8 6 1.4669 -2.4950 0.0131 9 8 0.2579 -2.5038 0.1316 10 8 2.1404 -3.6555 -0.1066 11 6 1.3567 -4.8776 -0.0862 12 1 0.4666 -4.7283 0.5251 13 6 0.9404 -5.2407 -1.5129 14 6 2.1838 -5.9950 0.4955 15 1 3.1972 -5.8057 0.8171 16 6 1.6467 -7.2591 0.6170 17 7 2.3683 -8.2342 1.1251 18 14 -0.1060 -7.5867 0.0600 19 1 -0.1035 -7.9949 -1.3677 20 1 -0.6924 -8.6736 0.8847 21 1 -0.9154 -6.3521 0.2205 22 1 -0.3633 -0.1119 1.0216 23 1 -0.3634 0.9405 -0.4140 24 1 -0.3633 -0.8288 -0.6077 25 1 3.9733 2.1534 -0.0112 26 1 5.3156 0.0915 -0.0112 27 1 4.1673 -2.1100 0.0014 28 1 0.3421 -4.4324 -1.9337 29 1 1.8304 -5.3900 -2.1242 30 1 0.3525 -6.1584 -1.4975 31 1 1.9906 -9.1235 1.2103 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768781122.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:19 Heat of formation + Delta-G solvation = -67.672853 kcal Electronic energy + Delta-G solvation = -16242.102729 eV Core-core repulsion = 13488.162729 eV Total energy + Delta-G solvation = -2753.940000 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.93406 -40.59593 -37.79048 -35.36222 -34.03860 -33.61936 -32.52467 -28.93394 -27.37521 -26.02029 -23.96441 -22.94535 -21.74769 -19.42263 -18.61293 -18.03875 -17.39777 -17.15284 -16.98645 -16.50605 -15.48137 -15.16288 -14.86652 -14.48690 -14.32322 -14.11797 -13.79252 -13.53940 -13.48274 -13.37832 -12.95542 -12.84070 -12.24915 -11.70898 -11.68246 -11.30077 -11.26725 -11.01361 -10.84846 -10.60523 -10.08546 -8.45874 -6.55118 -0.51890 0.13952 1.23383 1.31202 1.40475 1.49560 1.76026 2.18841 2.70253 2.87028 3.24249 3.55035 3.71030 3.86358 4.01366 4.20418 4.36452 4.41663 4.53583 4.54880 4.69336 4.70255 4.73287 5.02247 5.07962 5.12951 5.21682 5.31474 5.52045 5.65540 6.10478 6.48550 6.77544 6.80729 7.09523 8.69904 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.042716 B = 0.006533 C = 0.005909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.339071 B = 4285.042843 C = 4737.738205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.181 3.819 3 N -0.508 5.508 4 C 0.137 3.863 5 C -0.178 4.178 6 C -0.024 4.024 7 C -0.200 4.200 8 C 0.498 3.502 9 O -0.527 6.527 10 O -0.347 6.347 11 C 0.194 3.806 12 H 0.034 0.966 13 C -0.164 4.164 14 C -0.540 4.540 15 H 0.048 0.952 16 C 0.032 3.968 17 N -0.929 5.929 18 Si 0.939 3.061 19 H -0.250 1.250 20 H -0.283 1.283 21 H -0.256 1.256 22 H 0.081 0.919 23 H 0.089 0.911 24 H 0.084 0.916 25 H 0.206 0.794 26 H 0.184 0.816 27 H 0.150 0.850 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.103 17.116 -4.430 17.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.044 3.956 3 N -0.218 5.218 4 C -0.020 4.020 5 C -0.197 4.197 6 C -0.050 4.050 7 C -0.203 4.203 8 C 0.344 3.656 9 O -0.420 6.420 10 O -0.263 6.263 11 C 0.140 3.860 12 H 0.051 0.949 13 C -0.221 4.221 14 C -0.578 4.578 15 H 0.066 0.934 16 C -0.168 4.168 17 N -0.567 5.567 18 Si 0.764 3.236 19 H -0.176 1.176 20 H -0.210 1.210 21 H -0.181 1.181 22 H 0.100 0.900 23 H 0.107 0.893 24 H 0.102 0.898 25 H 0.223 0.777 26 H 0.201 0.799 27 H 0.168 0.832 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.296 17.636 -4.346 18.166 hybrid contribution -0.146 -1.675 0.080 1.683 sum 0.150 15.961 -4.266 16.522 Atomic orbital electron populations 1.21005 0.87480 1.04063 1.03956 1.21606 0.98034 0.86481 0.89511 1.67775 1.11655 1.27192 1.15185 1.23824 0.88510 1.00817 0.88820 1.22556 1.03904 0.91273 1.01959 1.22212 0.92203 1.01130 0.89443 1.20096 0.95739 0.90931 1.13583 1.21475 0.86048 0.85479 0.72622 1.90707 1.15877 1.88133 1.47268 1.86535 1.42562 1.15169 1.82019 1.20676 0.91387 0.78935 0.94980 0.94851 1.22420 1.01551 1.00658 0.97506 1.20927 1.00886 0.93206 1.42783 0.93359 1.25544 1.02055 0.94968 0.94244 1.69947 1.39125 1.02486 1.45144 0.86000 0.79691 0.78683 0.79228 1.17561 1.20989 1.18061 0.90015 0.89263 0.89766 0.77729 0.79902 0.83236 0.92325 0.91140 0.92446 0.91489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.02 8.87 71.24 0.63 -2.39 16 2 C 0.18 5.33 6.82 42.90 0.29 5.62 16 3 N -0.51 -12.75 10.26 -182.80 -1.88 -14.63 16 4 C 0.14 2.42 11.17 84.71 0.95 3.37 16 5 C -0.18 -3.15 10.10 22.32 0.23 -2.92 16 6 C -0.02 -0.64 9.74 22.74 0.22 -0.42 16 7 C -0.20 -6.52 5.89 -20.00 -0.12 -6.64 16 8 C 0.50 20.27 7.80 70.33 0.55 20.82 16 9 O -0.53 -22.82 12.64 19.91 0.25 -22.57 16 10 O -0.35 -15.92 9.21 -56.23 -0.52 -16.44 16 11 C 0.19 9.77 2.16 29.85 0.06 9.83 16 12 H 0.03 1.77 6.22 -2.39 -0.01 1.76 16 13 C -0.16 -7.19 9.03 71.98 0.65 -6.54 16 14 C -0.54 -31.44 9.48 25.60 0.24 -31.20 16 15 H 0.05 3.09 8.06 -2.91 -0.02 3.07 16 16 C 0.03 1.83 5.45 84.66 0.46 2.29 16 17 N -0.93 -56.37 13.96 21.45 0.30 -56.07 16 18 Si 0.94 43.70 24.37 68.60 1.67 45.37 16 19 H -0.25 -10.73 6.87 99.48 0.68 -10.05 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.26 -11.64 6.53 99.48 0.65 -10.99 16 22 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 23 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.08 2.65 5.86 -2.39 -0.01 2.63 16 25 H 0.21 1.72 8.06 -2.91 -0.02 1.70 16 26 H 0.18 1.74 8.06 -2.91 -0.02 1.71 16 27 H 0.15 3.97 7.72 -2.91 -0.02 3.95 16 28 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 29 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 30 H 0.06 2.50 3.27 -2.39 -0.01 2.49 16 31 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -69.24 265.57 5.06 -64.18 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 1.06 Total: 8.32 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: 4.17 Total: -8.16 kcal Atomic # 7 Polarization: -69.12 SS G_CDS: -1.58 Total: -70.70 kcal Atomic # 8 Polarization: -38.74 SS G_CDS: -0.27 Total: -39.01 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.67 Total: 45.37 kcal Total: -69.24 5.06 -64.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768781122.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.491 kcal (2) G-P(sol) polarization free energy of solvation -69.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds