Wall clock time and date at job start Mon Mar 30 2020 03:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99713 * 2 1 4 4 H 1.48504 * 109.47143 * 239.99706 * 3 2 1 5 5 H 1.48499 * 109.47171 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47410 * 119.99620 * 3 2 1 7 7 C 1.37874 * 120.00533 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00141 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99761 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47058 * 180.02562 * 9 7 2 11 11 O 1.45205 * 109.47194 * 180.02562 * 10 9 7 12 12 C 1.34231 * 117.00270 * 179.97438 * 11 10 9 13 13 O 1.20826 * 119.99457 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00160 * 180.02562 * 12 11 10 15 15 C 1.50695 * 109.47115 * 180.02562 * 14 12 11 16 16 C 1.38678 * 120.41675 * 270.25421 * 15 14 12 17 17 C 1.38627 * 118.41930 * 180.24221 * 16 15 14 18 18 C 1.38232 * 119.16085 * 359.75178 * 17 16 15 19 19 N 1.31857 * 120.76541 * 359.97438 * 18 17 16 20 20 C 1.31889 * 121.72235 * 0.02562 * 19 18 17 21 21 H 0.96994 * 120.00690 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.46950 * 60.00481 * 9 7 2 23 23 H 1.08999 * 109.47393 * 300.00425 * 9 7 2 24 24 H 1.08998 * 109.46869 * 60.00405 * 10 9 7 25 25 H 1.08999 * 109.47344 * 300.00429 * 10 9 7 26 26 H 1.09001 * 109.46626 * 60.00335 * 14 12 11 27 27 H 1.08996 * 109.46931 * 300.00207 * 14 12 11 28 28 H 1.07994 * 120.78944 * 359.96926 * 16 15 14 29 29 H 1.07997 * 120.42083 * 179.72800 * 17 16 15 30 30 H 1.07999 * 119.61954 * 180.02562 * 18 17 16 31 31 H 1.08002 * 119.61237 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2455 -3.6620 0.0027 11 8 1.5196 -4.9195 0.0033 12 6 2.2507 -6.0452 0.0036 13 8 3.4573 -5.9819 0.0040 14 6 1.5666 -7.3880 0.0036 15 6 2.6045 -8.4805 0.0047 16 6 3.0928 -8.9863 -1.1906 17 6 4.0431 -9.9944 -1.1413 18 6 4.4731 -10.4551 0.0890 19 7 3.9906 -9.9467 1.2058 20 6 3.0859 -8.9870 1.1968 21 1 -0.4851 0.8399 -0.0004 22 1 0.6242 -2.5574 -0.8880 23 1 0.6248 -2.5563 0.8919 24 1 2.8721 -3.6034 0.8927 25 1 2.8722 -3.6050 -0.8872 26 1 0.9442 -7.4786 -0.8866 27 1 0.9435 -7.4783 0.8934 28 1 2.7379 -8.6070 -2.1374 29 1 4.4421 -10.4148 -2.0526 30 1 5.2135 -11.2399 0.1361 31 1 2.7137 -8.5957 2.1321 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772744170.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:06 Heat of formation + Delta-G solvation = -66.779926 kcal Electronic energy + Delta-G solvation = -15342.295127 eV Core-core repulsion = 12588.393847 eV Total energy + Delta-G solvation = -2753.901280 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.59237 -39.63115 -36.22407 -33.76698 -33.35312 -32.08967 -30.38417 -28.33946 -25.04507 -23.73763 -22.92765 -21.09247 -20.39327 -17.45893 -17.26916 -16.73544 -16.19723 -15.93178 -15.84430 -15.07495 -14.52954 -13.87231 -13.61731 -13.53960 -13.22049 -12.65355 -12.39654 -12.32694 -11.76383 -11.23443 -11.08674 -10.75805 -10.72584 -10.31556 -9.96295 -9.68956 -9.67646 -9.59695 -9.34694 -9.13949 -8.46125 -6.12285 -4.16948 0.90144 1.12958 2.51568 3.12368 3.28951 3.33027 3.36719 3.75548 4.23193 4.37975 4.49881 4.61266 4.80469 4.82994 5.14819 5.21455 5.24222 5.31431 5.50566 5.60427 5.92019 6.04606 6.06693 6.07251 6.51829 6.60779 6.95895 7.53079 7.59508 7.80795 7.84380 8.15046 8.23373 8.88388 9.47619 10.99164 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.065493 B = 0.003893 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.425860 B = 7190.943325 C = 7314.737863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.075 3.925 11 O -0.357 6.357 12 C 0.455 3.545 13 O -0.512 6.512 14 C -0.073 4.073 15 C -0.122 4.122 16 C -0.059 4.059 17 C -0.173 4.173 18 C 0.096 3.904 19 N -0.485 5.485 20 C 0.116 3.884 21 H 0.264 0.736 22 H 0.028 0.972 23 H 0.028 0.972 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.116 0.884 27 H 0.117 0.883 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.155 0.845 31 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.221 -18.831 -1.778 19.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.003 3.997 11 O -0.273 6.273 12 C 0.297 3.703 13 O -0.401 6.401 14 C -0.111 4.111 15 C -0.124 4.124 16 C -0.085 4.085 17 C -0.193 4.193 18 C -0.061 4.061 19 N -0.193 5.193 20 C -0.041 4.041 21 H 0.074 0.926 22 H 0.047 0.953 23 H 0.047 0.953 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.134 0.866 27 H 0.136 0.864 28 H 0.152 0.848 29 H 0.153 0.847 30 H 0.172 0.828 31 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.725 -18.958 -0.972 19.345 hybrid contribution 0.302 1.378 -0.892 1.669 sum 4.027 -17.580 -1.864 18.132 Atomic orbital electron populations 1.69954 1.06096 1.27146 1.49657 1.24976 0.94919 0.99385 0.94812 0.86527 0.79488 0.82447 0.78807 1.20064 1.21094 1.20040 1.20944 0.93153 0.90149 1.52393 0.92319 1.19167 0.94172 0.89006 0.98884 1.23655 0.96377 0.78714 1.00952 1.86521 1.42407 1.15796 1.82581 1.23336 0.86601 0.87122 0.73215 1.90659 1.15774 1.88283 1.45416 1.20224 0.96877 0.86969 1.07068 1.20368 0.99299 0.97907 0.94874 1.21493 0.94560 0.94353 0.98133 1.22112 0.98866 0.98576 0.99707 1.22777 0.97446 0.98009 0.87867 1.67705 1.09943 1.10246 1.31455 1.22655 0.92108 0.91949 0.97424 0.92620 0.95346 0.95323 0.92289 0.92354 0.86624 0.86448 0.84753 0.84698 0.82809 0.82755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.53 -14.85 9.11 -34.44 -0.31 -15.16 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.02 0.65 5.35 -27.88 -0.15 0.50 16 10 C 0.08 1.67 5.41 37.16 0.20 1.87 16 11 O -0.36 -6.90 10.22 -39.26 -0.40 -7.30 16 12 C 0.45 7.55 7.95 36.01 0.29 7.83 16 13 O -0.51 -10.06 15.78 -18.75 -0.30 -10.35 16 14 C -0.07 -0.81 5.97 -29.04 -0.17 -0.98 16 15 C -0.12 -1.42 4.39 -104.48 -0.46 -1.88 16 16 C -0.06 -0.63 9.86 -39.28 -0.39 -1.01 16 17 C -0.17 -1.63 10.11 -39.44 -0.40 -2.03 16 18 C 0.10 0.99 11.18 -17.54 -0.20 0.80 16 19 N -0.49 -6.17 10.36 -13.25 -0.14 -6.31 16 20 C 0.12 1.41 10.86 -17.55 -0.19 1.22 16 21 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 22 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 25 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 26 H 0.12 1.01 8.10 -51.93 -0.42 0.59 16 27 H 0.12 1.03 8.09 -51.93 -0.42 0.61 16 28 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 29 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 30 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 283.19 15.07 4.27 4.27 Total: -1.00 -33.02 283.19 -6.49 -39.51 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: -3.76 Total: -3.40 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -1.88 Total: -7.22 kcal Atomic # 7 Polarization: -32.44 SS G_CDS: 0.60 Total: -31.84 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.70 Total: -17.65 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -33.02 -6.49 -39.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772744170.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.266 kcal (2) G-P(sol) polarization free energy of solvation -33.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds