Wall clock time and date at job start Mon Mar 30 2020 03:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38168 * 119.54921 * 2 1 4 4 C 1.39841 * 118.99652 * 180.02562 * 3 2 1 5 5 C 1.48051 * 120.92775 * 180.02562 * 4 3 2 6 6 O 1.21427 * 120.00133 * 359.97438 * 5 4 3 7 7 O 1.34679 * 119.99774 * 179.97438 * 5 4 3 8 8 C 1.45198 * 116.99756 * 180.02562 * 7 5 4 9 9 H 1.09006 * 109.47066 * 330.00179 * 8 7 5 10 10 C 1.52998 * 109.47048 * 90.00695 * 8 7 5 11 11 C 1.50709 * 109.46970 * 210.00588 * 8 7 5 12 12 H 1.07996 * 119.99442 * 359.97438 * 11 8 7 13 13 C 1.37872 * 119.99545 * 180.02562 * 11 8 7 14 14 N 1.31507 * 120.00525 * 359.97438 * 13 11 8 15 15 Si 1.86810 * 119.99512 * 179.97438 * 13 11 8 16 16 H 1.48497 * 109.47020 * 59.99770 * 15 13 11 17 17 H 1.48494 * 109.47090 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46942 * 299.99759 * 15 13 11 19 19 C 1.39880 * 118.14254 * 0.02562 * 4 3 2 20 20 C 1.38119 * 119.00001 * 359.97438 * 19 4 3 21 21 N 1.31799 * 119.55404 * 180.02562 * 2 1 3 22 22 H 1.09005 * 109.46803 * 269.97500 * 1 2 3 23 23 H 1.08996 * 109.47268 * 29.97944 * 1 2 3 24 24 H 1.08996 * 109.46888 * 149.98053 * 1 2 3 25 25 H 1.07997 * 120.50513 * 359.97438 * 3 2 1 26 26 H 1.09001 * 109.46842 * 180.02562 * 10 8 7 27 27 H 1.08998 * 109.46600 * 299.99555 * 10 8 7 28 28 H 1.08995 * 109.47203 * 59.99536 * 10 8 7 29 29 H 0.97006 * 120.00297 * 179.97438 * 14 13 11 30 30 H 1.08004 * 120.50002 * 180.02562 * 19 4 3 31 31 H 1.08000 * 119.55376 * 180.02562 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2020 0.0000 4 6 3.5868 1.1885 -0.0005 5 6 4.3599 2.4511 0.0000 6 8 3.7801 3.5180 0.0005 7 8 5.7062 2.4162 0.0000 8 6 6.3986 3.6925 0.0011 9 1 5.7895 4.4367 -0.5121 10 6 6.6419 4.1394 1.4440 11 6 7.7197 3.5479 -0.7096 12 1 8.0099 2.5923 -1.1205 13 6 8.5580 4.6354 -0.8341 14 7 8.2048 5.7988 -0.3332 15 14 10.1959 4.4559 -1.7144 16 1 9.9602 4.0223 -3.1150 17 1 10.9046 5.7609 -1.7123 18 1 11.0252 3.4418 -1.0151 19 6 4.2346 -0.0513 -0.0016 20 6 3.4741 -1.2042 -0.0016 21 7 2.1571 -1.1465 -0.0005 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3633 0.8901 -0.5135 24 1 -0.3633 -0.8898 -0.5141 25 1 1.6493 2.1378 -0.0004 26 1 7.1613 5.0977 1.4448 27 1 5.6864 4.2440 1.9579 28 1 7.2509 3.3952 1.9571 29 1 8.7948 6.5639 -0.4206 30 1 5.3132 -0.1061 -0.0017 31 1 3.9650 -2.1662 -0.0020 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793150191.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:23 Heat of formation + Delta-G solvation = -61.500216 kcal Electronic energy + Delta-G solvation = -15887.898520 eV Core-core repulsion = 13134.226185 eV Total energy + Delta-G solvation = -2753.672334 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.47495 -39.14007 -35.84282 -33.49471 -33.00595 -32.37180 -29.62102 -27.69379 -25.42253 -24.92169 -22.78199 -21.48069 -19.72919 -17.60629 -16.91524 -16.15399 -15.81394 -15.48053 -15.19893 -14.81053 -14.38372 -14.21001 -13.39719 -12.98472 -12.59750 -12.39473 -12.30089 -11.99350 -11.63720 -11.31045 -11.11435 -10.90850 -10.46016 -10.34464 -10.09959 -9.84278 -9.63766 -9.50984 -8.99594 -8.98949 -8.54452 -6.23343 -4.30985 0.74477 1.06318 3.02802 3.23450 3.25477 3.28171 3.41418 3.86666 4.20793 4.28104 4.68698 4.98207 5.03221 5.09467 5.14524 5.46620 5.47506 5.53070 5.67207 5.91103 5.98177 6.19536 6.55629 6.59768 6.82243 6.82940 7.03676 7.51324 7.64568 7.83528 7.87020 8.05832 8.48584 8.78672 9.34551 10.84073 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.046353 B = 0.005427 C = 0.005084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.912297 B = 5157.682979 C = 5505.857736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.115 3.885 3 C -0.116 4.116 4 C -0.062 4.062 5 C 0.495 3.505 6 O -0.508 6.508 7 O -0.347 6.347 8 C 0.216 3.784 9 H 0.048 0.952 10 C -0.155 4.155 11 C -0.524 4.524 12 H 0.069 0.931 13 C 0.064 3.936 14 N -0.889 5.889 15 Si 0.913 3.087 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.274 1.274 19 C -0.124 4.124 20 C 0.093 3.907 21 N -0.472 5.472 22 H 0.078 0.922 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.147 0.853 26 H 0.101 0.899 27 H 0.016 0.984 28 H 0.038 0.962 29 H 0.268 0.732 30 H 0.153 0.847 31 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.710 -10.465 1.154 14.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.023 4.023 3 C -0.136 4.136 4 C -0.071 4.071 5 C 0.338 3.662 6 O -0.399 6.399 7 O -0.263 6.263 8 C 0.164 3.836 9 H 0.066 0.934 10 C -0.213 4.213 11 C -0.561 4.561 12 H 0.087 0.913 13 C -0.139 4.139 14 N -0.526 5.526 15 Si 0.740 3.260 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.144 4.144 20 C -0.064 4.064 21 N -0.183 5.183 22 H 0.097 0.903 23 H 0.095 0.905 24 H 0.096 0.904 25 H 0.165 0.835 26 H 0.119 0.881 27 H 0.035 0.965 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.171 0.829 31 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -10.217 -10.667 1.175 14.818 hybrid contribution 1.464 0.968 -0.373 1.794 sum -8.753 -9.699 0.802 13.089 Atomic orbital electron populations 1.20698 0.88353 1.03584 1.03190 1.21221 0.97200 0.87716 0.96167 1.22137 0.93088 1.00236 0.98183 1.19847 0.93462 0.92694 1.01069 1.20927 0.83394 0.88097 0.73797 1.90769 1.71640 1.31638 1.45819 1.86536 1.16865 1.41539 1.81339 1.20732 0.90925 0.77044 0.94936 0.93397 1.22175 0.98774 1.03959 0.96405 1.20964 1.01147 0.97262 1.36769 0.91262 1.24882 0.98801 0.94686 0.95502 1.69883 1.37570 1.00594 1.44569 0.86306 0.82234 0.77444 0.79998 1.19945 1.20980 1.19886 1.22595 1.02864 0.91947 0.96991 1.22752 0.89004 0.98525 0.96110 1.67351 1.10473 1.29463 1.11027 0.90336 0.90506 0.90379 0.83504 0.88069 0.96480 0.94291 0.92248 0.82878 0.81970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.92 10.17 36.01 0.37 -0.55 16 2 C 0.11 1.48 6.78 -82.63 -0.56 0.92 16 3 C -0.12 -1.71 9.31 -39.01 -0.36 -2.07 16 4 C -0.06 -1.04 5.91 -104.66 -0.62 -1.66 16 5 C 0.49 10.59 7.90 34.76 0.27 10.87 16 6 O -0.51 -12.06 15.70 -19.21 -0.30 -12.37 16 7 O -0.35 -8.19 9.22 -40.43 -0.37 -8.56 16 8 C 0.22 5.75 2.56 -27.88 -0.07 5.68 16 9 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 10 C -0.16 -3.91 9.33 37.16 0.35 -3.57 16 11 C -0.52 -14.51 8.90 -34.44 -0.31 -14.82 16 12 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 13 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 14 N -0.89 -24.98 11.32 55.43 0.63 -24.36 16 15 Si 0.91 20.81 29.54 -169.99 -5.02 15.79 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 19 C -0.12 -1.79 9.71 -39.01 -0.38 -2.16 16 20 C 0.09 1.16 11.17 -17.60 -0.20 0.96 16 21 N -0.47 -6.36 10.24 -9.53 -0.10 -6.46 16 22 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.08 0.59 8.07 -51.93 -0.42 0.17 16 24 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.15 2.03 7.74 -52.49 -0.41 1.62 16 26 H 0.10 2.71 6.07 -51.93 -0.32 2.40 16 27 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.15 2.10 7.71 -52.48 -0.40 1.69 16 31 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 277.88 15.07 4.19 4.19 Total: -1.00 -30.74 277.88 -6.16 -36.90 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -3.58 Total: -0.36 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -1.60 Total: -4.77 kcal Atomic # 7 Polarization: -31.34 SS G_CDS: 0.53 Total: -30.81 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.67 Total: -20.93 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.74 -6.16 -36.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793150191.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.602 kcal (2) G-P(sol) polarization free energy of solvation -30.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds