Wall clock time and date at job start Mon Mar 30 2020 03:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37990 * 119.98706 * 2 1 4 4 C 1.39084 * 119.97168 * 179.97438 * 3 2 1 5 5 N 1.39515 * 120.02684 * 179.97438 * 4 3 2 6 6 C 1.46499 * 120.00553 * 294.68336 * 5 4 3 7 7 C 1.34777 * 119.99809 * 114.68807 * 5 4 3 8 8 O 1.21777 * 119.99942 * 5.30162 * 7 5 4 9 9 C 1.41775 * 120.00123 * 185.29898 * 7 5 4 10 10 H 1.07996 * 119.99988 * 0.02562 * 9 7 5 11 11 C 1.40138 * 119.99800 * 180.02562 * 9 7 5 12 12 N 1.30627 * 120.00048 * 359.97438 * 11 9 7 13 13 Si 1.86805 * 119.99686 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47200 * 89.99746 * 13 11 9 15 15 H 1.48494 * 109.47157 * 209.99517 * 13 11 9 16 16 H 1.48494 * 109.46939 * 329.99893 * 13 11 9 17 17 C 1.39129 * 119.94348 * 359.73517 * 4 3 2 18 18 C 1.37946 * 119.96509 * 0.50190 * 17 4 3 19 19 C 1.38844 * 119.98447 * 179.97438 * 2 1 3 20 20 O 1.35899 * 119.97468 * 0.02562 * 19 2 1 21 21 H 1.09003 * 109.46821 * 270.02365 * 1 2 3 22 22 H 1.09001 * 109.47012 * 30.01575 * 1 2 3 23 23 H 1.08993 * 109.47339 * 150.02158 * 1 2 3 24 24 H 1.07996 * 120.01711 * 359.97438 * 3 2 1 25 25 H 1.09005 * 109.46912 * 90.00146 * 6 5 4 26 26 H 1.08994 * 109.47752 * 209.99967 * 6 5 4 27 27 H 1.09007 * 109.47099 * 330.00739 * 6 5 4 28 28 H 0.97002 * 119.99355 * 180.02562 * 12 11 9 29 29 H 1.07996 * 120.01568 * 180.27100 * 17 4 3 30 30 H 1.08008 * 119.97931 * 179.79425 * 18 17 4 31 31 H 0.96699 * 113.99839 * 270.02505 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1952 0.0000 4 6 3.5875 1.1948 0.0005 5 7 4.2860 2.4025 0.0000 6 6 4.1946 3.3012 -1.1534 7 6 5.0449 2.7425 1.0606 8 8 5.1988 1.9550 1.9766 9 6 5.6642 4.0169 1.1098 10 1 5.5274 4.7154 0.2976 11 6 6.4538 4.3701 2.2124 12 7 6.6188 3.5253 3.1950 13 14 7.2692 6.0495 2.2775 14 1 6.3559 7.0180 2.9357 15 1 8.5331 5.9565 3.0514 16 1 7.5666 6.5092 0.8972 17 6 4.2816 -0.0109 0.0066 18 6 3.5897 -1.2043 0.0017 19 6 2.2009 -1.2026 0.0005 20 8 1.5205 -2.3790 0.0005 21 1 -0.3633 0.0004 1.0277 22 1 -0.3633 0.8899 -0.5141 23 1 -0.3633 -0.8901 -0.5135 24 1 1.6567 2.1305 -0.0004 25 1 3.3634 3.9919 -1.0108 26 1 5.1226 3.8646 -1.2495 27 1 4.0294 2.7158 -2.0579 28 1 7.1651 3.7701 3.9583 29 1 5.3616 -0.0126 0.0115 30 1 4.1284 -2.1405 0.0031 31 1 1.3230 -2.7191 0.8839 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000913528346.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:31 Heat of formation + Delta-G solvation = -75.501797 kcal Electronic energy + Delta-G solvation = -16263.452475 eV Core-core repulsion = 13509.172987 eV Total energy + Delta-G solvation = -2754.279488 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.14395 -39.66530 -37.47510 -35.53489 -34.64967 -33.52552 -30.61526 -28.46188 -27.87394 -26.82400 -23.74620 -22.97392 -20.99544 -19.21157 -18.50849 -17.82145 -17.25542 -17.00560 -16.34974 -15.88250 -15.18402 -15.06994 -14.58139 -14.23747 -14.10150 -13.65308 -13.48633 -13.18062 -13.17538 -12.98126 -12.73315 -12.68141 -12.60298 -12.25000 -12.01634 -11.36179 -10.97062 -9.98826 -9.76870 -9.66258 -8.87426 -8.35273 -6.98602 0.27985 0.38951 1.39467 1.40106 1.56596 2.21339 2.38211 2.64012 2.78568 3.36608 3.60932 3.93335 3.96221 4.33407 4.40017 4.49133 4.65886 4.78590 4.80721 4.86737 4.94109 4.98411 5.16719 5.28072 5.32516 5.48875 5.59540 5.78805 5.85901 6.06360 6.58978 6.77756 6.89409 7.35074 8.42375 8.62012 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.045619 B = 0.006269 C = 0.005984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.638093 B = 4465.108335 C = 4678.224817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.102 4.102 3 C -0.130 4.130 4 C 0.148 3.852 5 N -0.616 5.616 6 C 0.101 3.899 7 C 0.537 3.463 8 O -0.626 6.626 9 C -0.564 4.564 10 H 0.095 0.905 11 C 0.030 3.970 12 N -0.807 5.807 13 Si 1.000 3.000 14 H -0.260 1.260 15 H -0.273 1.273 16 H -0.245 1.245 17 C -0.126 4.126 18 C -0.132 4.132 19 C 0.085 3.915 20 O -0.495 6.495 21 H 0.079 0.921 22 H 0.076 0.924 23 H 0.082 0.918 24 H 0.131 0.869 25 H 0.053 0.947 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.277 0.723 29 H 0.097 0.903 30 H 0.142 0.858 31 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.869 -3.089 -7.072 11.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.103 4.103 3 C -0.151 4.151 4 C 0.055 3.945 5 N -0.348 5.348 6 C -0.041 4.041 7 C 0.347 3.653 8 O -0.514 6.514 9 C -0.599 4.599 10 H 0.113 0.887 11 C -0.187 4.187 12 N -0.435 5.435 13 Si 0.818 3.182 14 H -0.185 1.185 15 H -0.197 1.197 16 H -0.168 1.168 17 C -0.146 4.146 18 C -0.151 4.151 19 C 0.040 3.960 20 O -0.308 6.308 21 H 0.097 0.903 22 H 0.095 0.905 23 H 0.100 0.900 24 H 0.149 0.851 25 H 0.072 0.928 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.115 0.885 30 H 0.160 0.840 31 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -8.667 -3.464 -7.042 11.692 hybrid contribution 0.760 0.493 0.816 1.220 sum -7.907 -2.971 -6.225 10.493 Atomic orbital electron populations 1.20692 0.88047 1.03910 1.03186 1.20348 0.98265 0.91319 1.00377 1.21208 0.92273 0.98607 1.02966 1.18066 0.91376 0.86713 0.98301 1.45661 1.50477 1.18741 1.19951 1.21634 1.02379 0.93390 0.86679 1.17462 0.78712 0.88844 0.80274 1.90604 1.66302 1.54932 1.39553 1.20685 1.31552 1.00509 1.07198 0.88670 1.27085 0.95109 1.02985 0.93529 1.70199 1.29661 1.37103 1.06548 0.84990 0.77522 0.75553 0.80099 1.18476 1.19741 1.16840 1.21156 0.99284 0.92557 1.01608 1.21374 0.94157 0.97896 1.01710 1.18181 0.89184 0.85540 1.03121 1.84712 1.75800 1.35186 1.35057 0.90284 0.90511 0.89953 0.85129 0.92839 0.90869 0.91128 0.91300 0.88506 0.83977 0.73678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.26 9.79 71.24 0.70 -1.57 16 2 C -0.10 -3.18 5.89 -19.78 -0.12 -3.30 16 3 C -0.13 -4.84 9.47 22.41 0.21 -4.63 16 4 C 0.15 6.58 4.89 38.34 0.19 6.76 16 5 N -0.62 -29.70 2.92 -664.31 -1.94 -31.64 16 6 C 0.10 3.74 9.86 127.77 1.26 5.00 16 7 C 0.54 31.81 7.32 85.12 0.62 32.44 16 8 O -0.63 -42.72 14.35 -4.59 -0.07 -42.79 16 9 C -0.56 -31.67 8.53 23.61 0.20 -31.47 16 10 H 0.10 4.72 6.04 -2.91 -0.02 4.70 16 11 C 0.03 1.67 5.50 85.33 0.47 2.14 16 12 N -0.81 -48.97 11.73 21.85 0.26 -48.71 16 13 Si 1.00 39.90 29.56 68.60 2.03 41.93 16 14 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 15 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 16 H -0.25 -9.00 7.11 99.48 0.71 -8.30 16 17 C -0.13 -5.46 9.18 22.41 0.21 -5.25 16 18 C -0.13 -4.67 9.98 22.36 0.22 -4.45 16 19 C 0.08 2.64 6.68 22.57 0.15 2.80 16 20 O -0.50 -12.06 12.54 -92.41 -1.16 -13.22 16 21 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 22 H 0.08 1.52 8.08 -2.39 -0.02 1.51 16 23 H 0.08 1.64 7.53 -2.39 -0.02 1.62 16 24 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 25 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 26 H 0.07 2.72 6.33 -2.39 -0.02 2.70 16 27 H 0.07 2.22 8.05 -2.38 -0.02 2.20 16 28 H 0.28 15.13 8.29 -92.71 -0.77 14.36 16 29 H 0.10 4.59 8.06 -2.91 -0.02 4.57 16 30 H 0.14 4.29 8.06 -2.91 -0.02 4.26 16 31 H 0.41 6.12 9.06 -74.06 -0.67 5.45 16 Total: -1.00 -77.84 273.34 3.71 -74.12 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 0.48 Total: 21.83 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 4.11 Total: -1.53 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -1.68 Total: -80.35 kcal Atomic # 8 Polarization: -54.78 SS G_CDS: -1.22 Total: -56.01 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.93 kcal Total: -77.84 3.71 -74.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000913528346.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.379 kcal (2) G-P(sol) polarization free energy of solvation -77.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds