Wall clock time and date at job start Mon Mar 30 2020 03:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86807 * 119.99634 * 2 1 4 4 H 1.48500 * 109.47360 * 270.00342 * 3 2 1 5 5 H 1.48500 * 109.47083 * 30.00792 * 3 2 1 6 6 H 1.48502 * 109.46588 * 150.00089 * 3 2 1 7 7 C 1.37873 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99650 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99965 * 359.71988 * 7 2 1 10 10 C 1.50697 * 109.47137 * 180.27849 * 9 7 2 11 11 C 1.38286 * 119.92698 * 269.72586 * 10 9 7 12 12 C 1.38122 * 120.06639 * 179.76605 * 11 10 9 13 13 C 1.38862 * 119.92875 * 0.50570 * 12 11 10 14 14 N 1.39929 * 120.07099 * 179.72592 * 13 12 11 15 15 C 1.34780 * 120.00330 * 213.31493 * 14 13 12 16 16 O 1.21284 * 119.99434 * 5.26765 * 15 14 13 17 17 C 1.50698 * 120.00120 * 185.27166 * 15 14 13 18 18 O 1.42898 * 109.46797 * 179.97438 * 17 15 14 19 19 C 1.38871 * 119.86473 * 359.74908 * 13 12 11 20 20 C 1.38112 * 119.92493 * 359.97438 * 19 13 12 21 21 H 0.97000 * 119.99850 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47375 * 300.27603 * 9 7 2 23 23 H 1.08997 * 109.47358 * 60.27581 * 9 7 2 24 24 H 1.07996 * 119.96599 * 0.02562 * 11 10 9 25 25 H 1.08006 * 120.03084 * 180.25302 * 12 11 10 26 26 H 0.97001 * 119.99846 * 33.30353 * 14 13 12 27 27 H 1.09003 * 109.47024 * 299.99539 * 17 15 14 28 28 H 1.08999 * 109.46753 * 59.99787 * 17 15 14 29 29 H 0.96705 * 113.99649 * 179.97438 * 18 17 15 30 30 H 1.08002 * 120.04284 * 179.97438 * 19 13 12 31 31 H 1.08005 * 119.96508 * 179.97438 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 0.0053 10 6 2.2304 -3.6445 0.0103 11 6 2.6744 -4.1779 -1.1858 12 6 3.5756 -5.2245 -1.1846 13 6 4.0278 -5.7480 0.0195 14 7 4.9365 -6.8121 0.0242 15 6 4.8869 -7.7364 1.0039 16 8 3.9968 -7.7004 1.8270 17 6 5.9375 -8.8143 1.0768 18 8 5.6703 -9.6650 2.1935 19 6 3.5761 -5.2136 1.2190 20 6 2.6792 -4.1633 1.2110 21 1 -0.4850 0.8401 0.0004 22 1 0.6245 -2.5529 0.8955 23 1 0.6244 -2.5608 -0.8844 24 1 2.3192 -3.7729 -2.1219 25 1 3.9251 -5.6380 -2.1192 26 1 5.6020 -6.8847 -0.6778 27 1 5.9191 -9.4022 0.1591 28 1 6.9197 -8.3569 1.1957 29 1 6.3082 -10.3837 2.3018 30 1 3.9256 -5.6188 2.1571 31 1 2.3271 -3.7475 2.1435 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928401237.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:28 Heat of formation + Delta-G solvation = -63.999689 kcal Electronic energy + Delta-G solvation = -15536.548092 eV Core-core repulsion = 12782.767373 eV Total energy + Delta-G solvation = -2753.780719 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.32948 -38.29112 -36.63399 -34.86401 -33.03171 -30.73379 -30.30670 -28.36253 -26.18514 -23.22642 -22.40161 -20.88041 -20.01322 -18.09887 -17.66534 -16.34896 -16.27525 -16.04965 -15.02643 -14.66944 -14.36488 -14.22006 -13.51681 -13.05159 -12.84649 -12.60394 -12.55511 -12.01150 -11.38984 -11.27219 -10.81297 -10.60668 -10.57625 -10.35580 -10.04198 -9.82117 -9.41802 -9.25927 -8.41170 -8.29384 -7.39320 -6.02397 -4.06579 1.82571 2.05454 2.65428 2.81834 3.31154 3.37451 3.41673 4.21913 4.37947 4.50751 4.59236 4.74141 4.85420 5.31467 5.41994 5.56146 5.92343 6.04102 6.10553 6.19689 6.64070 6.75087 6.88749 7.16177 7.17151 7.21122 7.48119 7.52785 7.70793 7.87540 7.93312 8.14876 8.33752 8.98746 9.57123 11.07220 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.055486 B = 0.004504 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.508462 B = 6214.860500 C = 6227.679296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.511 4.511 8 H 0.057 0.943 9 C 0.047 3.953 10 C -0.041 4.041 11 C -0.108 4.108 12 C -0.143 4.143 13 C 0.104 3.896 14 N -0.668 5.668 15 C 0.503 3.497 16 O -0.500 6.500 17 C 0.063 3.937 18 O -0.547 6.547 19 C -0.117 4.117 20 C -0.107 4.107 21 H 0.262 0.738 22 H 0.029 0.971 23 H 0.029 0.971 24 H 0.123 0.877 25 H 0.115 0.885 26 H 0.405 0.595 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.386 0.614 30 H 0.123 0.877 31 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.246 -15.648 -1.863 20.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.550 4.550 8 H 0.075 0.925 9 C 0.010 3.990 10 C -0.042 4.042 11 C -0.127 4.127 12 C -0.163 4.163 13 C 0.012 3.988 14 N -0.315 5.315 15 C 0.288 3.712 16 O -0.373 6.373 17 C -0.019 4.019 18 O -0.352 6.352 19 C -0.137 4.137 20 C -0.126 4.126 21 H 0.072 0.928 22 H 0.048 0.952 23 H 0.047 0.953 24 H 0.141 0.859 25 H 0.133 0.867 26 H 0.240 0.760 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.233 0.767 30 H 0.141 0.859 31 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 11.974 -15.150 -1.137 19.343 hybrid contribution 1.355 0.531 -0.548 1.555 sum 13.328 -14.618 -1.685 19.854 Atomic orbital electron populations 1.69962 1.06035 1.26802 1.50511 1.25019 0.94880 0.99247 0.95217 0.86535 0.79840 0.83186 0.78130 1.20611 1.21167 1.19820 1.21066 0.93050 0.89879 1.50966 0.92454 1.18359 0.92576 0.89574 0.98457 1.20728 0.96382 0.95243 0.91845 1.20895 0.97355 0.95852 0.98587 1.20732 1.00248 0.99865 0.95431 1.17484 0.96164 0.90655 0.94486 1.43259 1.34921 1.24801 1.28512 1.20441 0.86596 0.82344 0.81772 1.90767 1.34650 1.72922 1.38936 1.21804 0.96842 0.92219 0.91019 1.86608 1.55793 1.44665 1.48112 1.21000 0.99462 0.96559 0.96724 1.21007 0.97421 0.95563 0.98587 0.92844 0.95239 0.95278 0.85929 0.86738 0.75979 0.90471 0.90319 0.76703 0.85895 0.86000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.51 -14.40 9.09 -34.44 -0.31 -14.72 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.05 1.23 5.10 -29.04 -0.15 1.08 16 10 C -0.04 -0.92 5.07 -104.59 -0.53 -1.45 16 11 C -0.11 -2.10 9.69 -39.61 -0.38 -2.48 16 12 C -0.14 -2.33 9.96 -39.39 -0.39 -2.72 16 13 C 0.10 1.74 6.28 -83.70 -0.53 1.21 16 14 N -0.67 -8.24 5.34 -9.86 -0.05 -8.30 16 15 C 0.50 6.79 7.65 -10.98 -0.08 6.71 16 16 O -0.50 -9.45 14.18 -14.36 -0.20 -9.65 16 17 C 0.06 0.50 7.53 36.00 0.27 0.77 16 18 O -0.55 -5.42 13.19 -55.14 -0.73 -6.15 16 19 C -0.12 -2.25 8.66 -39.39 -0.34 -2.59 16 20 C -0.11 -2.24 9.69 -39.61 -0.38 -2.63 16 21 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 22 H 0.03 0.81 8.08 -51.93 -0.42 0.39 16 23 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 24 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 25 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 26 H 0.41 3.21 8.82 -40.82 -0.36 2.85 16 27 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.39 1.42 9.12 45.56 0.42 1.83 16 30 H 0.12 2.35 6.41 -52.49 -0.34 2.02 16 31 H 0.12 2.50 8.06 -52.48 -0.42 2.08 16 LS Contribution 278.07 15.07 4.19 4.19 Total: -1.00 -35.86 278.07 -6.78 -42.64 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -2.78 Total: 1.81 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -2.93 Total: -15.27 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.68 Total: -34.14 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.93 Total: -15.80 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -35.86 -6.78 -42.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928401237.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.356 kcal (2) G-P(sol) polarization free energy of solvation -35.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds