Wall clock time and date at job start Mon Mar 30 2020 03:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86807 * 119.99634 * 2 1 4 4 H 1.48500 * 109.47360 * 270.00342 * 3 2 1 5 5 H 1.48500 * 109.47083 * 30.00792 * 3 2 1 6 6 H 1.48502 * 109.46588 * 150.00089 * 3 2 1 7 7 C 1.37873 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99650 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99965 * 359.71988 * 7 2 1 10 10 C 1.50697 * 109.47137 * 180.27849 * 9 7 2 11 11 C 1.38286 * 119.92698 * 269.72586 * 10 9 7 12 12 C 1.38122 * 120.06639 * 179.76605 * 11 10 9 13 13 C 1.38862 * 119.92875 * 0.50570 * 12 11 10 14 14 N 1.39929 * 120.07099 * 179.72592 * 13 12 11 15 15 C 1.34780 * 120.00330 * 213.31493 * 14 13 12 16 16 O 1.21284 * 119.99434 * 5.26765 * 15 14 13 17 17 C 1.50698 * 120.00120 * 185.27166 * 15 14 13 18 18 O 1.42898 * 109.46797 * 179.97438 * 17 15 14 19 19 C 1.38871 * 119.86473 * 359.74908 * 13 12 11 20 20 C 1.38112 * 119.92493 * 359.97438 * 19 13 12 21 21 H 0.97000 * 119.99850 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47375 * 300.27603 * 9 7 2 23 23 H 1.08997 * 109.47358 * 60.27581 * 9 7 2 24 24 H 1.07996 * 119.96599 * 0.02562 * 11 10 9 25 25 H 1.08006 * 120.03084 * 180.25302 * 12 11 10 26 26 H 0.97001 * 119.99846 * 33.30353 * 14 13 12 27 27 H 1.09003 * 109.47024 * 299.99539 * 17 15 14 28 28 H 1.08999 * 109.46753 * 59.99787 * 17 15 14 29 29 H 0.96705 * 113.99649 * 179.97438 * 18 17 15 30 30 H 1.08002 * 120.04284 * 179.97438 * 19 13 12 31 31 H 1.08005 * 119.96508 * 179.97438 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 0.0053 10 6 2.2304 -3.6445 0.0103 11 6 2.6744 -4.1779 -1.1858 12 6 3.5756 -5.2245 -1.1846 13 6 4.0278 -5.7480 0.0195 14 7 4.9365 -6.8121 0.0242 15 6 4.8869 -7.7364 1.0039 16 8 3.9968 -7.7004 1.8270 17 6 5.9375 -8.8143 1.0768 18 8 5.6703 -9.6650 2.1935 19 6 3.5761 -5.2136 1.2190 20 6 2.6792 -4.1633 1.2110 21 1 -0.4850 0.8401 0.0004 22 1 0.6245 -2.5529 0.8955 23 1 0.6244 -2.5608 -0.8844 24 1 2.3192 -3.7729 -2.1219 25 1 3.9251 -5.6380 -2.1192 26 1 5.6020 -6.8847 -0.6778 27 1 5.9191 -9.4022 0.1591 28 1 6.9197 -8.3569 1.1957 29 1 6.3082 -10.3837 2.3018 30 1 3.9256 -5.6188 2.1571 31 1 2.3271 -3.7475 2.1435 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928401237.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:28 Heat of formation + Delta-G solvation = -91.111581 kcal Electronic energy + Delta-G solvation = -15537.723752 eV Core-core repulsion = 12782.767373 eV Total energy + Delta-G solvation = -2754.956379 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.50479 -39.65003 -37.39758 -36.24605 -34.99353 -32.40632 -31.80301 -29.55693 -27.72978 -25.04714 -23.87668 -22.29917 -21.32554 -18.88238 -18.79884 -18.49492 -17.33505 -16.97872 -16.76569 -15.94524 -15.84504 -15.57728 -14.65205 -14.54361 -14.48355 -14.25480 -13.66521 -13.37228 -13.28534 -13.16051 -12.61226 -12.46443 -12.03372 -11.67379 -11.53395 -11.14566 -11.08714 -10.76003 -10.60115 -9.79111 -8.89649 -8.18377 -6.33405 0.40374 0.54323 1.40041 1.41870 1.52996 1.57674 1.88708 2.40412 2.98206 3.10959 3.59096 3.78820 4.05134 4.12453 4.29767 4.36471 4.40179 4.59235 4.63603 4.72949 5.09442 5.30428 5.32677 5.39880 5.46490 5.58448 5.75092 6.06222 6.10812 6.23620 6.44444 6.79303 6.91586 7.16968 7.35247 8.89878 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.055486 B = 0.004504 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.508462 B = 6214.860500 C = 6227.679296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.968 3.032 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.529 4.529 8 H 0.056 0.944 9 C 0.056 3.944 10 C -0.075 4.075 11 C -0.113 4.113 12 C -0.125 4.125 13 C 0.118 3.882 14 N -0.651 5.651 15 C 0.493 3.507 16 O -0.563 6.563 17 C 0.071 3.929 18 O -0.584 6.584 19 C -0.128 4.128 20 C -0.122 4.122 21 H 0.266 0.734 22 H -0.002 1.002 23 H 0.008 0.992 24 H 0.129 0.871 25 H 0.164 0.836 26 H 0.432 0.568 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.410 0.590 30 H 0.119 0.881 31 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.380 -16.942 -3.436 23.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.792 3.208 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.566 4.566 8 H 0.074 0.926 9 C 0.019 3.981 10 C -0.075 4.075 11 C -0.132 4.132 12 C -0.145 4.145 13 C 0.025 3.975 14 N -0.300 5.300 15 C 0.282 3.718 16 O -0.440 6.440 17 C -0.009 4.009 18 O -0.394 6.394 19 C -0.148 4.148 20 C -0.141 4.141 21 H 0.074 0.926 22 H 0.016 0.984 23 H 0.026 0.974 24 H 0.147 0.853 25 H 0.182 0.818 26 H 0.272 0.728 27 H 0.137 0.863 28 H 0.134 0.866 29 H 0.263 0.737 30 H 0.136 0.864 31 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 15.175 -16.486 -2.746 22.574 hybrid contribution 0.421 0.787 -0.051 0.894 sum 15.596 -15.698 -2.797 22.304 Atomic orbital electron populations 1.70094 1.07758 1.27974 1.51328 1.25968 0.95782 1.03231 0.94545 0.85399 0.78481 0.78189 0.78696 1.19313 1.20631 1.19085 1.21388 0.93154 0.91139 1.50954 0.92551 1.18099 0.92890 0.91260 0.95818 1.20418 0.97697 0.95678 0.93748 1.21021 0.97950 0.96667 0.97523 1.21070 0.98204 0.97993 0.97211 1.17595 0.95568 0.90781 0.93598 1.43180 1.34372 1.23146 1.29302 1.21671 0.86799 0.82962 0.80324 1.90753 1.37452 1.74601 1.41204 1.21939 0.95656 0.91016 0.92290 1.86537 1.57686 1.46049 1.49129 1.20994 0.99576 0.96245 0.97957 1.20913 0.98630 0.96746 0.97770 0.92564 0.98405 0.97379 0.85316 0.81802 0.72826 0.86299 0.86582 0.73739 0.86354 0.87385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.12 13.29 21.45 0.28 -56.83 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.97 44.71 29.54 68.60 2.03 46.73 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 7 C -0.53 -30.79 9.09 25.60 0.23 -30.56 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.06 3.12 5.10 29.10 0.15 3.27 16 10 C -0.07 -3.46 5.07 -19.84 -0.10 -3.56 16 11 C -0.11 -4.32 9.69 22.25 0.22 -4.10 16 12 C -0.12 -3.70 9.96 22.39 0.22 -3.48 16 13 C 0.12 3.68 6.28 38.15 0.24 3.92 16 14 N -0.65 -13.63 5.34 -303.51 -1.62 -15.25 16 15 C 0.49 11.99 7.65 87.66 0.67 12.66 16 16 O -0.56 -20.99 14.18 15.99 0.23 -20.76 16 17 C 0.07 0.83 7.53 71.24 0.54 1.36 16 18 O -0.58 -9.91 13.19 -129.94 -1.71 -11.62 16 19 C -0.13 -4.91 8.66 22.39 0.19 -4.72 16 20 C -0.12 -5.36 9.69 22.25 0.22 -5.14 16 21 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 22 H 0.00 -0.14 8.08 -2.39 -0.02 -0.16 16 23 H 0.01 0.46 8.08 -2.39 -0.02 0.44 16 24 H 0.13 4.68 8.06 -2.91 -0.02 4.65 16 25 H 0.16 3.26 8.06 -2.91 -0.02 3.23 16 26 H 0.43 4.49 8.82 -92.71 -0.82 3.67 16 27 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.41 1.68 9.12 -74.05 -0.68 1.01 16 30 H 0.12 4.65 6.41 -2.91 -0.02 4.63 16 31 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -82.70 278.07 1.91 -80.79 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -0.33 Total: 6.67 kcal Atomic # 6 Polarization: -32.77 SS G_CDS: 3.04 Total: -29.73 kcal Atomic # 7 Polarization: -70.75 SS G_CDS: -1.34 Total: -72.08 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -1.49 Total: -32.38 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -82.70 1.91 -80.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928401237.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.317 kcal (2) G-P(sol) polarization free energy of solvation -82.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds