Wall clock time and date at job start Mon Mar 30 2020 03:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46902 * 109.47293 * 2 1 4 4 C 1.46897 * 110.99701 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46921 * 179.97438 * 4 3 2 6 6 O 1.42901 * 109.46850 * 64.99896 * 5 4 3 7 7 C 1.35671 * 116.99781 * 179.97438 * 6 5 4 8 8 C 1.39316 * 119.81769 * 0.25218 * 7 6 5 9 9 C 1.36441 * 120.18282 * 180.25688 * 8 7 6 10 10 C 1.40835 * 119.81132 * 359.46844 * 9 8 7 11 11 C 1.41216 * 120.17483 * 180.29815 * 10 9 8 12 12 H 1.07997 * 120.00438 * 24.54125 * 11 10 9 13 13 C 1.39897 * 119.99576 * 204.53835 * 11 10 9 14 14 N 1.30875 * 120.00270 * 17.93189 * 13 11 10 15 15 Si 1.86801 * 119.99742 * 197.93556 * 13 11 10 16 16 H 1.48504 * 109.47145 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47431 * 120.00060 * 15 13 11 18 18 H 1.48499 * 109.46661 * 240.00011 * 15 13 11 19 19 C 1.40823 * 119.64107 * 0.28458 * 10 9 8 20 20 C 1.36436 * 119.81465 * 359.97438 * 19 10 9 21 21 H 1.08998 * 109.47501 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46725 * 299.99849 * 1 2 3 23 23 H 1.08999 * 109.47200 * 60.00035 * 1 2 3 24 24 H 1.08997 * 109.46617 * 239.99670 * 2 1 3 25 25 H 1.09007 * 109.46864 * 120.00027 * 2 1 3 26 26 H 1.00896 * 110.99504 * 303.95413 * 3 2 1 27 27 H 1.08997 * 109.47149 * 59.99986 * 4 3 2 28 28 H 1.09001 * 109.47043 * 299.99753 * 4 3 2 29 29 H 1.08997 * 109.46763 * 305.00168 * 5 4 3 30 30 H 1.08994 * 109.46860 * 185.00103 * 5 4 3 31 31 H 1.07997 * 119.91004 * 0.03109 * 8 7 6 32 32 H 1.08001 * 120.09133 * 179.74824 * 9 8 7 33 33 H 0.97001 * 120.00621 * 179.97438 * 14 13 11 34 34 H 1.08002 * 120.09699 * 180.02562 * 19 10 9 35 35 H 1.08004 * 119.90886 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4882 1.4241 0.0006 5 6 3.9596 2.8797 -0.0001 6 8 3.5641 3.5090 1.2205 7 6 3.9075 4.8116 1.3812 8 6 4.6095 5.4722 0.3753 9 6 4.9631 6.7807 0.5313 10 6 4.6067 7.4667 1.7085 11 6 4.9632 8.8229 1.8753 12 1 5.1387 9.4455 1.0105 13 6 5.0891 9.3599 3.1610 14 7 5.2269 8.5652 4.1916 15 14 5.0604 11.2115 3.4066 16 1 4.8955 11.8827 2.0923 17 1 3.9271 11.5756 4.2945 18 1 6.3363 11.6481 4.0283 19 6 3.8926 6.7930 2.7181 20 6 3.5512 5.4830 2.5487 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8901 26 1 1.6442 1.9012 -0.7814 27 1 3.8655 0.9200 -0.8891 28 1 3.8647 0.9202 0.8909 29 1 3.5111 3.4064 -0.8423 30 1 5.0455 2.9098 -0.0892 31 1 4.8777 4.9460 -0.5289 32 1 5.5108 7.2902 -0.2477 33 1 5.3146 8.9375 5.0830 34 1 3.6151 7.3121 3.6237 35 1 3.0032 4.9649 3.3219 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020525099.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:01 Heat of formation + Delta-G solvation = -27.235119 kcal Electronic energy + Delta-G solvation = -15786.861048 eV Core-core repulsion = 13170.507655 eV Total energy + Delta-G solvation = -2616.353394 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.77450 -36.91928 -35.86884 -33.28673 -31.50436 -29.67180 -28.92618 -27.39635 -24.68750 -22.55992 -22.13041 -20.64352 -20.33089 -17.27774 -17.08463 -15.87770 -15.56175 -15.17495 -14.58614 -14.24743 -13.90111 -13.69423 -13.31681 -12.75794 -12.38001 -12.14167 -12.04949 -11.85140 -11.69122 -11.28486 -11.24980 -11.09714 -10.89476 -10.64366 -10.52092 -9.87142 -9.74862 -9.27343 -8.96199 -8.40170 -7.57309 -6.95044 -6.66506 -4.19446 2.82517 3.01576 3.12006 3.17305 3.25737 3.99374 4.09997 4.21992 4.67738 4.95130 5.09940 5.25751 5.35547 5.38057 5.59124 5.64967 5.72452 5.75828 5.89594 6.00800 6.07842 6.14240 6.30435 6.80447 6.98313 7.04623 7.17748 7.25201 7.36660 7.54827 7.62796 7.86725 8.06927 8.27110 8.54479 8.73445 8.95891 9.06110 10.27638 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.059188 B = 0.004258 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.958614 B = 6573.820514 C = 6761.115495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 N -0.682 5.682 4 C 0.062 3.938 5 C 0.071 3.929 6 O -0.313 6.313 7 C -0.003 4.003 8 C -0.171 4.171 9 C -0.198 4.198 10 C 0.086 3.914 11 C -0.465 4.465 12 H 0.076 0.924 13 C 0.075 3.925 14 N -0.800 5.800 15 Si 0.906 3.094 16 H -0.262 1.262 17 H -0.273 1.273 18 H -0.276 1.276 19 C -0.132 4.132 20 C -0.121 4.121 21 H 0.057 0.943 22 H 0.065 0.935 23 H 0.052 0.948 24 H 0.023 0.977 25 H 0.071 0.929 26 H 0.340 0.660 27 H 0.041 0.959 28 H 0.080 0.920 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.279 0.721 34 H 0.125 0.875 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.269 -10.614 -6.134 12.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.075 4.075 3 N -0.314 5.314 4 C -0.067 4.067 5 C -0.006 4.006 6 O -0.228 6.228 7 C -0.047 4.047 8 C -0.190 4.190 9 C -0.218 4.218 10 C 0.084 3.916 11 C -0.495 4.495 12 H 0.094 0.906 13 C -0.142 4.142 14 N -0.426 5.426 15 Si 0.731 3.269 16 H -0.185 1.185 17 H -0.198 1.198 18 H -0.201 1.201 19 C -0.152 4.152 20 C -0.140 4.140 21 H 0.076 0.924 22 H 0.084 0.916 23 H 0.071 0.929 24 H 0.041 0.959 25 H 0.089 0.911 26 H 0.158 0.842 27 H 0.059 0.941 28 H 0.099 0.901 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.089 0.911 34 H 0.143 0.857 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.375 -10.658 -5.064 12.585 hybrid contribution 0.474 0.621 -0.973 1.248 sum -3.901 -10.037 -6.037 12.346 Atomic orbital electron populations 1.21766 0.95021 1.01411 1.02624 1.21920 0.95766 0.89708 1.00130 1.60375 1.07692 1.12995 1.50310 1.22000 0.88079 0.95668 1.00922 1.22430 0.98304 0.92032 0.87860 1.85939 1.76450 1.23319 1.37090 1.18655 1.06087 0.83018 0.96933 1.20408 1.04395 0.96498 0.97713 1.20562 1.06975 0.93784 1.00454 1.17583 0.89938 0.93215 0.90881 1.19476 1.42115 0.95298 0.92606 0.90614 1.25866 0.92391 1.00197 0.95713 1.69844 1.35547 1.37003 1.00256 0.86306 0.78447 0.82859 0.79328 1.18528 1.19774 1.20148 1.20974 1.00235 0.92954 1.01023 1.19842 1.03799 0.95103 0.95233 0.92424 0.91576 0.92916 0.95851 0.91092 0.84214 0.94057 0.90138 0.93413 0.92799 0.88981 0.88874 0.91053 0.85743 0.88479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.17 37.16 0.38 -1.01 16 2 C 0.05 0.56 6.40 -3.82 -0.02 0.54 16 3 N -0.68 -8.83 6.45 -113.77 -0.73 -9.56 16 4 C 0.06 0.81 6.07 -3.82 -0.02 0.78 16 5 C 0.07 1.13 5.01 37.16 0.19 1.32 16 6 O -0.31 -6.59 10.07 -18.71 -0.19 -6.78 16 7 C 0.00 -0.08 6.71 -38.78 -0.26 -0.34 16 8 C -0.17 -3.97 8.96 -39.83 -0.36 -4.33 16 9 C -0.20 -4.98 9.74 -39.25 -0.38 -5.36 16 10 C 0.09 2.35 5.57 -106.81 -0.60 1.75 16 11 C -0.46 -12.57 9.04 -37.83 -0.34 -12.92 16 12 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 13 C 0.07 1.91 5.13 -17.34 -0.09 1.82 16 14 N -0.80 -21.09 10.96 55.55 0.61 -20.48 16 15 Si 0.91 18.98 29.60 -169.99 -5.03 13.95 16 16 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 17 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 18 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 19 C -0.13 -3.55 8.64 -39.25 -0.34 -3.88 16 20 C -0.12 -3.02 9.92 -39.83 -0.40 -3.42 16 21 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 22 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.34 4.09 8.73 -39.29 -0.34 3.75 16 27 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.05 0.74 7.64 -51.93 -0.40 0.34 16 30 H 0.05 0.83 7.66 -51.93 -0.40 0.44 16 31 H 0.09 1.85 6.27 -52.49 -0.33 1.52 16 32 H 0.09 2.19 8.06 -52.49 -0.42 1.76 16 33 H 0.28 6.66 8.30 -40.82 -0.34 6.33 16 34 H 0.12 3.40 6.16 -52.49 -0.32 3.08 16 35 H 0.10 2.26 8.06 -52.48 -0.42 1.84 16 LS Contribution 295.55 15.07 4.45 4.45 Total: -1.00 -29.00 295.55 -8.28 -37.28 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.14 Total: 6.19 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: -2.24 Total: -25.04 kcal Atomic # 7 Polarization: -29.92 SS G_CDS: -0.13 Total: -30.04 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.19 Total: -6.78 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.00 -8.28 -37.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020525099.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.044 kcal (2) G-P(sol) polarization free energy of solvation -29.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds