Wall clock time and date at job start Mon Mar 30 2020 03:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46902 * 109.47293 * 2 1 4 4 C 1.46897 * 110.99701 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46921 * 179.97438 * 4 3 2 6 6 O 1.42901 * 109.46850 * 64.99896 * 5 4 3 7 7 C 1.35671 * 116.99781 * 179.97438 * 6 5 4 8 8 C 1.39316 * 119.81769 * 0.25218 * 7 6 5 9 9 C 1.36441 * 120.18282 * 180.25688 * 8 7 6 10 10 C 1.40835 * 119.81132 * 359.46844 * 9 8 7 11 11 C 1.41216 * 120.17483 * 180.29815 * 10 9 8 12 12 H 1.07997 * 120.00438 * 24.54125 * 11 10 9 13 13 C 1.39897 * 119.99576 * 204.53835 * 11 10 9 14 14 N 1.30875 * 120.00270 * 17.93189 * 13 11 10 15 15 Si 1.86801 * 119.99742 * 197.93556 * 13 11 10 16 16 H 1.48504 * 109.47145 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47431 * 120.00060 * 15 13 11 18 18 H 1.48499 * 109.46661 * 240.00011 * 15 13 11 19 19 C 1.40823 * 119.64107 * 0.28458 * 10 9 8 20 20 C 1.36436 * 119.81465 * 359.97438 * 19 10 9 21 21 H 1.08998 * 109.47501 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46725 * 299.99849 * 1 2 3 23 23 H 1.08999 * 109.47200 * 60.00035 * 1 2 3 24 24 H 1.08997 * 109.46617 * 239.99670 * 2 1 3 25 25 H 1.09007 * 109.46864 * 120.00027 * 2 1 3 26 26 H 1.00896 * 110.99504 * 303.95413 * 3 2 1 27 27 H 1.08997 * 109.47149 * 59.99986 * 4 3 2 28 28 H 1.09001 * 109.47043 * 299.99753 * 4 3 2 29 29 H 1.08997 * 109.46763 * 305.00168 * 5 4 3 30 30 H 1.08994 * 109.46860 * 185.00103 * 5 4 3 31 31 H 1.07997 * 119.91004 * 0.03109 * 8 7 6 32 32 H 1.08001 * 120.09133 * 179.74824 * 9 8 7 33 33 H 0.97001 * 120.00621 * 179.97438 * 14 13 11 34 34 H 1.08002 * 120.09699 * 180.02562 * 19 10 9 35 35 H 1.08004 * 119.90886 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4882 1.4241 0.0006 5 6 3.9596 2.8797 -0.0001 6 8 3.5641 3.5090 1.2205 7 6 3.9075 4.8116 1.3812 8 6 4.6095 5.4722 0.3753 9 6 4.9631 6.7807 0.5313 10 6 4.6067 7.4667 1.7085 11 6 4.9632 8.8229 1.8753 12 1 5.1387 9.4455 1.0105 13 6 5.0891 9.3599 3.1610 14 7 5.2269 8.5652 4.1916 15 14 5.0604 11.2115 3.4066 16 1 4.8955 11.8827 2.0923 17 1 3.9271 11.5756 4.2945 18 1 6.3363 11.6481 4.0283 19 6 3.8926 6.7930 2.7181 20 6 3.5512 5.4830 2.5487 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8901 26 1 1.6442 1.9012 -0.7814 27 1 3.8655 0.9200 -0.8891 28 1 3.8647 0.9202 0.8909 29 1 3.5111 3.4064 -0.8423 30 1 5.0455 2.9098 -0.0892 31 1 4.8777 4.9460 -0.5289 32 1 5.5108 7.2902 -0.2477 33 1 5.3146 8.9375 5.0830 34 1 3.6151 7.3121 3.6237 35 1 3.0032 4.9649 3.3219 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020525099.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:00 Heat of formation + Delta-G solvation = -45.062905 kcal Electronic energy + Delta-G solvation = -15787.634119 eV Core-core repulsion = 13170.507655 eV Total energy + Delta-G solvation = -2617.126464 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.48714 -38.41703 -37.17162 -35.17063 -32.60730 -31.50712 -30.81240 -28.55233 -26.58369 -23.94732 -22.97049 -22.54347 -21.98952 -19.21789 -18.73780 -17.02961 -16.98569 -16.75566 -15.99721 -15.70713 -15.40762 -15.00622 -14.75759 -14.16866 -14.00459 -13.81628 -13.53790 -13.42938 -12.81367 -12.75417 -12.61533 -12.44398 -12.34415 -12.03755 -11.95468 -11.66124 -11.49357 -11.13624 -10.84836 -9.53451 -9.31329 -8.88128 -8.57088 -6.20313 0.97635 1.05060 1.40770 1.52595 1.56220 2.24420 2.69885 2.75489 3.22733 3.72746 4.02765 4.16304 4.28021 4.32054 4.36865 4.40346 4.51029 4.57469 4.64135 4.84031 4.93740 4.99151 5.09977 5.13038 5.24829 5.31015 5.33903 5.61982 5.67659 5.92106 6.08186 6.09179 6.29277 6.47063 6.60540 6.86277 6.97328 7.15559 8.39364 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.059188 B = 0.004258 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.958614 B = 6573.820514 C = 6761.115495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 N -0.705 5.705 4 C 0.070 3.930 5 C 0.060 3.940 6 O -0.325 6.325 7 C 0.005 3.995 8 C -0.168 4.168 9 C -0.208 4.208 10 C 0.053 3.947 11 C -0.501 4.501 12 H 0.075 0.925 13 C 0.033 3.967 14 N -0.833 5.833 15 Si 0.983 3.017 16 H -0.258 1.258 17 H -0.265 1.265 18 H -0.267 1.267 19 C -0.151 4.151 20 C -0.136 4.136 21 H 0.075 0.925 22 H 0.048 0.952 23 H 0.056 0.944 24 H 0.041 0.959 25 H 0.066 0.934 26 H 0.344 0.656 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.128 0.872 32 H 0.105 0.895 33 H 0.287 0.713 34 H 0.109 0.891 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.285 -11.325 -7.329 14.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.074 4.074 3 N -0.338 5.338 4 C -0.059 4.059 5 C -0.016 4.016 6 O -0.240 6.240 7 C -0.039 4.039 8 C -0.187 4.187 9 C -0.228 4.228 10 C 0.051 3.949 11 C -0.531 4.531 12 H 0.093 0.907 13 C -0.181 4.181 14 N -0.460 5.460 15 Si 0.804 3.196 16 H -0.182 1.182 17 H -0.190 1.190 18 H -0.192 1.192 19 C -0.171 4.171 20 C -0.155 4.155 21 H 0.094 0.906 22 H 0.068 0.932 23 H 0.075 0.925 24 H 0.059 0.941 25 H 0.085 0.915 26 H 0.162 0.838 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.145 0.855 32 H 0.123 0.877 33 H 0.097 0.903 34 H 0.127 0.873 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.393 -11.402 -6.274 13.736 hybrid contribution 0.460 0.648 -0.673 1.042 sum -3.933 -10.754 -6.946 13.393 Atomic orbital electron populations 1.21748 0.94348 1.02422 1.02005 1.21960 0.96317 0.88466 1.00697 1.60368 1.07776 1.14702 1.50965 1.21950 0.88363 0.93478 1.02133 1.22832 0.99144 0.93548 0.86038 1.85939 1.76440 1.21778 1.39865 1.18731 1.04719 0.84221 0.96256 1.20706 1.03340 0.95855 0.98787 1.20814 1.07067 0.94745 1.00145 1.17937 0.90902 0.94032 0.92022 1.19728 1.44016 0.95771 0.93552 0.90666 1.26743 0.91295 1.05171 0.94883 1.69897 1.35887 1.39260 1.00937 0.85155 0.78822 0.76350 0.79311 1.18175 1.18995 1.19169 1.20890 1.01511 0.93837 1.00848 1.20004 1.04203 0.94852 0.96413 0.90627 0.93245 0.92455 0.94115 0.91531 0.83789 0.90800 0.90770 0.92502 0.91872 0.85456 0.87710 0.90268 0.87324 0.87635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 10.17 71.98 0.73 -1.71 16 2 C 0.05 1.00 6.40 86.30 0.55 1.56 16 3 N -0.71 -16.78 6.45 -513.87 -3.31 -20.09 16 4 C 0.07 1.62 6.07 86.31 0.52 2.14 16 5 C 0.06 1.78 5.01 71.98 0.36 2.14 16 6 O -0.32 -13.23 10.07 -89.88 -0.90 -14.14 16 7 C 0.00 0.23 6.71 22.79 0.15 0.38 16 8 C -0.17 -7.57 8.96 22.11 0.20 -7.37 16 9 C -0.21 -10.44 9.74 22.49 0.22 -10.22 16 10 C 0.05 2.97 5.57 -21.28 -0.12 2.85 16 11 C -0.50 -27.70 9.04 23.40 0.21 -27.49 16 12 H 0.08 4.00 7.91 -2.91 -0.02 3.98 16 13 C 0.03 1.69 5.13 85.24 0.44 2.13 16 14 N -0.83 -44.85 10.96 21.82 0.24 -44.61 16 15 Si 0.98 39.10 29.60 68.60 2.03 41.13 16 16 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 17 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 18 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 19 C -0.15 -8.36 8.64 22.48 0.19 -8.16 16 20 C -0.14 -6.90 9.92 22.11 0.22 -6.68 16 21 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 26 H 0.34 7.54 8.73 -89.70 -0.78 6.75 16 27 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.06 1.59 7.64 -2.39 -0.02 1.57 16 30 H 0.06 1.76 7.66 -2.39 -0.02 1.75 16 31 H 0.13 4.73 6.27 -2.91 -0.02 4.71 16 32 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 33 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 34 H 0.11 6.22 6.16 -2.91 -0.02 6.20 16 35 H 0.11 5.02 8.06 -2.91 -0.02 4.99 16 Total: -1.00 -62.74 295.55 2.02 -60.72 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: 0.29 Total: 27.46 kcal Atomic # 6 Polarization: -54.14 SS G_CDS: 3.68 Total: -50.46 kcal Atomic # 7 Polarization: -61.63 SS G_CDS: -3.08 Total: -64.71 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.90 Total: -14.14 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Total: -62.74 2.02 -60.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020525099.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.654 kcal (2) G-P(sol) polarization free energy of solvation -62.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds