Wall clock time and date at job start Mon Mar 30 2020 03:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 116.99600 * 2 1 4 4 C 1.38737 * 120.05249 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94063 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05706 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.94114 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47116 * 90.00278 * 7 6 5 9 9 N 1.46896 * 109.47074 * 179.97438 * 8 7 6 10 10 C 1.46906 * 111.00024 * 180.02562 * 9 8 7 11 11 C 1.50692 * 109.47176 * 180.02562 * 10 9 8 12 12 H 1.07995 * 120.00188 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00186 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99738 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00242 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47370 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47232 * 119.99869 * 15 13 11 18 18 H 1.48501 * 109.47485 * 240.00039 * 15 13 11 19 19 C 1.38263 * 120.11156 * 0.25962 * 6 5 4 20 20 C 1.38143 * 120.05579 * 359.44512 * 19 6 5 21 21 H 1.08996 * 109.47049 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47478 * 299.99538 * 1 2 3 23 23 H 1.08998 * 109.47227 * 59.99807 * 1 2 3 24 24 H 1.07994 * 120.02908 * 359.97438 * 4 3 2 25 25 H 1.07998 * 119.97159 * 180.02562 * 5 4 3 26 26 H 1.09000 * 109.46646 * 209.99692 * 7 6 5 27 27 H 1.09000 * 109.47248 * 330.00409 * 7 6 5 28 28 H 1.09000 * 109.47214 * 300.00167 * 8 7 6 29 29 H 1.09008 * 109.47142 * 59.99333 * 8 7 6 30 30 H 1.00899 * 111.00333 * 303.94980 * 9 8 7 31 31 H 1.09000 * 109.46874 * 300.00255 * 10 9 8 32 32 H 1.09004 * 109.47166 * 59.99603 * 10 9 8 33 33 H 0.96993 * 119.99893 * 180.02562 * 14 13 11 34 34 H 1.08001 * 119.97259 * 179.69844 * 19 6 5 35 35 H 1.07992 * 120.02912 * 180.24892 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3017 3.6759 0.0016 7 6 3.9859 5.0187 0.0028 8 6 4.2167 5.4747 -1.4393 9 7 4.8831 6.7838 -1.4382 10 6 5.1209 7.2548 -2.8093 11 6 5.8048 8.5969 -2.7679 12 1 6.0390 9.0546 -1.8182 13 6 6.1315 9.2407 -3.9426 14 7 5.8468 8.6831 -5.0992 15 14 6.9787 10.9047 -3.8913 16 1 7.1872 11.3107 -2.4782 17 1 8.2920 10.8130 -4.5784 18 1 6.1309 11.9131 -4.5766 19 6 1.9209 3.6048 0.0081 20 6 1.2914 2.3752 0.0014 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 4.0208 0.3801 -0.0005 25 1 5.1344 2.5752 -0.0008 26 1 3.3580 5.7459 0.5176 27 1 4.9441 4.9378 0.5160 28 1 4.8445 4.7475 -1.9543 29 1 3.2585 5.5555 -1.9527 30 1 4.3509 7.4600 -0.9112 31 1 5.7550 6.5402 -3.3339 32 1 4.1688 7.3476 -3.3318 33 1 6.0770 9.1358 -5.9255 34 1 1.3340 4.5114 0.0143 35 1 0.2129 2.3202 0.0024 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034936545.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:07 Heat of formation + Delta-G solvation = -25.589079 kcal Electronic energy + Delta-G solvation = -15434.885348 eV Core-core repulsion = 12818.603332 eV Total energy + Delta-G solvation = -2616.282016 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.19364 -37.89996 -35.52152 -32.92091 -31.52812 -31.06931 -28.48130 -27.26473 -25.51261 -22.76423 -22.46981 -21.25791 -20.63383 -18.24139 -16.39764 -16.34386 -15.88804 -15.44751 -14.90477 -14.53635 -14.34360 -13.86939 -13.57340 -13.33798 -12.91870 -12.69764 -12.20126 -12.04879 -11.88731 -11.32700 -11.23649 -10.99653 -10.88749 -10.70342 -10.54608 -10.44630 -9.88217 -9.16280 -9.01647 -8.47139 -8.07000 -7.27979 -6.01923 -4.03920 1.32681 1.41148 3.13784 3.31922 3.38991 3.44294 3.73941 4.44247 4.69270 4.81374 4.90954 4.92100 4.92575 5.21309 5.31129 5.33912 5.37738 5.49934 5.62630 5.66896 5.84588 5.99337 6.05863 6.26621 6.33200 6.38244 6.53952 6.74428 6.78710 7.27768 7.29677 7.44154 7.80240 8.14391 8.41355 8.63428 9.05866 9.60994 11.09313 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.063060 B = 0.003503 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.913148 B = 7990.621345 C = 8071.904775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.113 3.887 4 C -0.150 4.150 5 C -0.076 4.076 6 C -0.105 4.105 7 C -0.076 4.076 8 C 0.066 3.934 9 N -0.692 5.692 10 C 0.193 3.807 11 C -0.513 4.513 12 H 0.063 0.937 13 C 0.054 3.946 14 N -0.898 5.898 15 Si 0.899 3.101 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.285 1.285 19 C -0.079 4.079 20 C -0.206 4.206 21 H 0.097 0.903 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.128 0.872 25 H 0.131 0.869 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.017 0.983 30 H 0.328 0.672 31 H 0.028 0.972 32 H -0.014 1.014 33 H 0.261 0.739 34 H 0.124 0.876 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.289 -14.901 11.031 21.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.069 3.931 4 C -0.168 4.168 5 C -0.094 4.094 6 C -0.106 4.106 7 C -0.114 4.114 8 C -0.065 4.065 9 N -0.322 5.322 10 C 0.066 3.934 11 C -0.552 4.552 12 H 0.081 0.919 13 C -0.147 4.147 14 N -0.538 5.538 15 Si 0.727 3.273 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.211 1.211 19 C -0.097 4.097 20 C -0.225 4.225 21 H 0.116 0.884 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.146 0.854 25 H 0.149 0.851 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.036 0.964 30 H 0.144 0.856 31 H 0.046 0.954 32 H 0.004 0.996 33 H 0.070 0.930 34 H 0.142 0.858 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.554 -15.330 10.893 21.093 hybrid contribution -0.792 1.228 -0.511 1.548 sum -10.346 -14.102 10.382 20.339 Atomic orbital electron populations 1.23015 0.78668 1.03674 1.01331 1.86047 1.21178 1.27206 1.89065 1.19014 0.92410 0.83983 0.97739 1.20414 0.91273 0.98648 1.06501 1.20944 1.00130 0.90886 0.97472 1.19933 0.93456 0.95717 1.01523 1.20590 1.00382 0.92115 0.98275 1.21853 0.96622 0.93820 0.94156 1.60682 1.50218 1.02753 1.18553 1.19558 0.95136 0.95579 0.83093 1.21238 1.38229 1.03031 0.92709 0.91876 1.25010 0.96097 0.98214 0.95379 1.69978 1.47827 1.38696 0.97280 0.86420 0.79153 0.83579 0.78121 1.19631 1.20985 1.21108 1.20881 0.94182 0.96957 0.97675 1.21185 0.99777 0.92411 1.09126 0.88449 0.92784 0.92696 0.85385 0.85080 0.91495 0.90294 0.91747 0.96446 0.85631 0.95426 0.99641 0.92971 0.85831 0.85754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.67 10.50 -19.44 -0.20 -3.87 16 3 C 0.11 1.40 6.69 -39.21 -0.26 1.14 16 4 C -0.15 -1.85 9.99 -39.43 -0.39 -2.24 16 5 C -0.08 -0.97 9.69 -39.61 -0.38 -1.35 16 6 C -0.11 -1.42 5.14 -104.60 -0.54 -1.96 16 7 C -0.08 -1.09 5.60 -27.88 -0.16 -1.25 16 8 C 0.07 1.19 5.67 -3.83 -0.02 1.17 16 9 N -0.69 -15.15 6.49 -115.06 -0.75 -15.89 16 10 C 0.19 5.19 5.44 -4.98 -0.03 5.17 16 11 C -0.51 -14.81 9.32 -34.44 -0.32 -15.13 16 12 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 13 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 15 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 16 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 C -0.08 -0.99 9.69 -39.61 -0.38 -1.37 16 20 C -0.21 -2.41 9.04 -39.43 -0.36 -2.76 16 21 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.05 0.34 7.66 -51.93 -0.40 -0.05 16 23 H 0.05 0.37 7.66 -51.93 -0.40 -0.02 16 24 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 25 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 26 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 27 H 0.08 1.13 8.08 -51.93 -0.42 0.71 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.02 0.32 8.14 -51.92 -0.42 -0.10 16 30 H 0.33 6.75 8.72 -39.29 -0.34 6.41 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 32 H -0.01 -0.40 8.14 -51.93 -0.42 -0.83 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.12 1.16 6.30 -52.49 -0.33 0.83 16 LS Contribution 300.18 15.07 4.52 4.52 Total: -1.00 -31.74 300.18 -7.90 -39.64 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -5.24 Total: 1.16 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -1.95 Total: -15.91 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: -0.01 Total: -42.40 kcal Atomic # 8 Polarization: -3.67 SS G_CDS: -0.20 Total: -3.87 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.74 -7.90 -39.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034936545.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.047 kcal (2) G-P(sol) polarization free energy of solvation -31.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds