Wall clock time and date at job start Mon Mar 30 2020 03:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 116.99600 * 2 1 4 4 C 1.38737 * 120.05249 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94063 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05706 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.94114 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47116 * 90.00278 * 7 6 5 9 9 N 1.46896 * 109.47074 * 179.97438 * 8 7 6 10 10 C 1.46906 * 111.00024 * 180.02562 * 9 8 7 11 11 C 1.50692 * 109.47176 * 180.02562 * 10 9 8 12 12 H 1.07995 * 120.00188 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00186 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99738 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00242 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47370 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47232 * 119.99869 * 15 13 11 18 18 H 1.48501 * 109.47485 * 240.00039 * 15 13 11 19 19 C 1.38263 * 120.11156 * 0.25962 * 6 5 4 20 20 C 1.38143 * 120.05579 * 359.44512 * 19 6 5 21 21 H 1.08996 * 109.47049 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47478 * 299.99538 * 1 2 3 23 23 H 1.08998 * 109.47227 * 59.99807 * 1 2 3 24 24 H 1.07994 * 120.02908 * 359.97438 * 4 3 2 25 25 H 1.07998 * 119.97159 * 180.02562 * 5 4 3 26 26 H 1.09000 * 109.46646 * 209.99692 * 7 6 5 27 27 H 1.09000 * 109.47248 * 330.00409 * 7 6 5 28 28 H 1.09000 * 109.47214 * 300.00167 * 8 7 6 29 29 H 1.09008 * 109.47142 * 59.99333 * 8 7 6 30 30 H 1.00899 * 111.00333 * 303.94980 * 9 8 7 31 31 H 1.09000 * 109.46874 * 300.00255 * 10 9 8 32 32 H 1.09004 * 109.47166 * 59.99603 * 10 9 8 33 33 H 0.96993 * 119.99893 * 180.02562 * 14 13 11 34 34 H 1.08001 * 119.97259 * 179.69844 * 19 6 5 35 35 H 1.07992 * 120.02912 * 180.24892 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3017 3.6759 0.0016 7 6 3.9859 5.0187 0.0028 8 6 4.2167 5.4747 -1.4393 9 7 4.8831 6.7838 -1.4382 10 6 5.1209 7.2548 -2.8093 11 6 5.8048 8.5969 -2.7679 12 1 6.0390 9.0546 -1.8182 13 6 6.1315 9.2407 -3.9426 14 7 5.8468 8.6831 -5.0992 15 14 6.9787 10.9047 -3.8913 16 1 7.1872 11.3107 -2.4782 17 1 8.2920 10.8130 -4.5784 18 1 6.1309 11.9131 -4.5766 19 6 1.9209 3.6048 0.0081 20 6 1.2914 2.3752 0.0014 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 4.0208 0.3801 -0.0005 25 1 5.1344 2.5752 -0.0008 26 1 3.3580 5.7459 0.5176 27 1 4.9441 4.9378 0.5160 28 1 4.8445 4.7475 -1.9543 29 1 3.2585 5.5555 -1.9527 30 1 4.3509 7.4600 -0.9112 31 1 5.7550 6.5402 -3.3339 32 1 4.1688 7.3476 -3.3318 33 1 6.0770 9.1358 -5.9255 34 1 1.3340 4.5114 0.0143 35 1 0.2129 2.3202 0.0024 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034936545.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:06 Heat of formation + Delta-G solvation = -46.227998 kcal Electronic energy + Delta-G solvation = -15435.780319 eV Core-core repulsion = 12818.603332 eV Total energy + Delta-G solvation = -2617.176987 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.07591 -38.86443 -37.18684 -34.84545 -32.99803 -32.00824 -29.79441 -28.35859 -27.06914 -24.18817 -23.55550 -23.09411 -21.72960 -19.08234 -18.55689 -17.28787 -16.84116 -16.63754 -16.44067 -16.22644 -15.41099 -15.08273 -14.79779 -14.52729 -14.36572 -13.99716 -13.77475 -13.44081 -12.93036 -12.84773 -12.70007 -12.56821 -12.27191 -12.09311 -11.93518 -11.73171 -11.61981 -11.25667 -10.67443 -9.95163 -9.15243 -9.02901 -8.23054 -6.34841 0.39510 0.43872 1.41842 1.42870 1.57029 2.39162 2.40442 2.77142 3.10157 3.55932 3.83992 3.96212 4.13618 4.22145 4.32079 4.39256 4.42749 4.47373 4.56422 4.67814 4.71248 4.77355 4.96277 5.06852 5.14292 5.20557 5.25547 5.33862 5.40261 5.61531 5.74846 5.83393 6.00961 6.42819 6.45689 6.72101 6.89230 7.36445 8.89002 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.063060 B = 0.003503 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.913148 B = 7990.621345 C = 8071.904775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.107 3.893 4 C -0.162 4.162 5 C -0.083 4.083 6 C -0.124 4.124 7 C -0.060 4.060 8 C 0.069 3.931 9 N -0.689 5.689 10 C 0.206 3.794 11 C -0.536 4.536 12 H 0.067 0.933 13 C -0.002 4.002 14 N -0.936 5.936 15 Si 0.977 3.023 16 H -0.261 1.261 17 H -0.278 1.278 18 H -0.277 1.277 19 C -0.085 4.085 20 C -0.208 4.208 21 H 0.119 0.881 22 H 0.065 0.935 23 H 0.060 0.940 24 H 0.140 0.860 25 H 0.139 0.861 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.052 0.948 29 H 0.013 0.987 30 H 0.337 0.663 31 H -0.002 1.002 32 H -0.040 1.040 33 H 0.265 0.735 34 H 0.136 0.864 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.822 -14.656 12.114 21.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.062 3.938 4 C -0.180 4.180 5 C -0.101 4.101 6 C -0.124 4.124 7 C -0.098 4.098 8 C -0.061 4.061 9 N -0.320 5.320 10 C 0.079 3.921 11 C -0.574 4.574 12 H 0.085 0.915 13 C -0.200 4.200 14 N -0.576 5.576 15 Si 0.801 3.199 16 H -0.185 1.185 17 H -0.204 1.204 18 H -0.202 1.202 19 C -0.103 4.103 20 C -0.227 4.227 21 H 0.138 0.862 22 H 0.083 0.917 23 H 0.079 0.921 24 H 0.157 0.843 25 H 0.157 0.843 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.071 0.929 29 H 0.031 0.969 30 H 0.154 0.846 31 H 0.016 0.984 32 H -0.023 1.023 33 H 0.074 0.926 34 H 0.154 0.846 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.105 -15.102 12.001 21.776 hybrid contribution -0.711 1.022 -0.847 1.506 sum -10.816 -14.079 11.153 20.967 Atomic orbital electron populations 1.23325 0.76599 1.05531 1.02145 1.86034 1.23375 1.26780 1.88832 1.19218 0.92677 0.84690 0.97173 1.20627 0.91830 0.98973 1.06615 1.21096 1.00678 0.90971 0.97314 1.19891 0.94049 0.95187 1.03318 1.20396 1.00997 0.93110 0.95272 1.21890 0.95612 0.91605 0.96995 1.60554 1.51506 1.04320 1.15606 1.19217 0.93097 0.94628 0.85199 1.21592 1.38753 1.03893 0.93150 0.91483 1.26017 0.96580 1.02557 0.94808 1.70108 1.48730 1.40643 0.98126 0.85226 0.77881 0.78145 0.78680 1.18455 1.20396 1.20234 1.21096 0.93982 0.97928 0.97300 1.21436 1.01049 0.91804 1.08396 0.86240 0.91650 0.92112 0.84264 0.84318 0.90236 0.90092 0.92943 0.96887 0.84567 0.98432 1.02257 0.92584 0.84623 0.83422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.34 -7.15 10.50 -92.47 -0.97 -8.12 16 3 C 0.11 2.53 6.69 22.51 0.15 2.68 16 4 C -0.16 -3.87 9.99 22.37 0.22 -3.64 16 5 C -0.08 -2.05 9.69 22.25 0.22 -1.83 16 6 C -0.12 -3.22 5.14 -19.85 -0.10 -3.32 16 7 C -0.06 -1.68 5.60 29.85 0.17 -1.51 16 8 C 0.07 2.51 5.67 86.30 0.49 3.00 16 9 N -0.69 -30.39 6.49 -517.93 -3.36 -33.75 16 10 C 0.21 11.43 5.44 85.55 0.47 11.90 16 11 C -0.54 -31.12 9.32 25.60 0.24 -30.88 16 12 H 0.07 3.76 7.81 -2.91 -0.02 3.74 16 13 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 14 N -0.94 -57.48 13.29 21.45 0.28 -57.19 16 15 Si 0.98 44.62 29.54 68.60 2.03 46.64 16 16 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 17 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 18 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 19 C -0.09 -2.01 9.69 22.25 0.22 -1.80 16 20 C -0.21 -4.51 9.04 22.37 0.20 -4.30 16 21 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 22 H 0.06 0.67 7.66 -2.39 -0.02 0.65 16 23 H 0.06 0.69 7.66 -2.39 -0.02 0.67 16 24 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 25 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 26 H 0.08 2.01 8.08 -2.39 -0.02 2.00 16 27 H 0.08 2.23 8.08 -2.39 -0.02 2.21 16 28 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.34 13.78 8.72 -89.69 -0.78 13.00 16 31 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 32 H -0.04 -2.39 8.14 -2.39 -0.02 -2.41 16 33 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 34 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 35 H 0.15 2.38 6.30 -2.91 -0.02 2.36 16 Total: -1.00 -67.84 300.18 2.10 -65.74 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.28 Total: 14.69 kcal Atomic # 6 Polarization: -31.85 SS G_CDS: 3.84 Total: -28.01 kcal Atomic # 7 Polarization: -87.87 SS G_CDS: -3.08 Total: -90.95 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -0.97 Total: -8.12 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -67.84 2.10 -65.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034936545.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.508 kcal (2) G-P(sol) polarization free energy of solvation -67.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds