Wall clock time and date at job start Mon Mar 30 2020 03:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 O 1.42906 * 109.47321 * 239.99826 * 2 1 3 5 5 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 6 6 N 1.46504 * 109.47051 * 185.00029 * 5 2 1 7 7 C 1.46500 * 119.99970 * 89.99956 * 6 5 2 8 8 C 1.50695 * 109.47151 * 90.00166 * 7 6 5 9 9 H 1.07996 * 120.00297 * 359.97438 * 8 7 6 10 10 C 1.37881 * 119.99761 * 180.02562 * 8 7 6 11 11 N 1.31511 * 119.99907 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99943 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47049 * 89.99690 * 12 10 8 14 14 H 1.48497 * 109.47335 * 209.99709 * 12 10 8 15 15 H 1.48505 * 109.46750 * 329.99759 * 12 10 8 16 16 C 1.39674 * 119.99730 * 269.99614 * 6 5 2 17 17 C 1.38907 * 120.07517 * 359.72745 * 16 6 5 18 18 C 1.38114 * 119.92234 * 179.77046 * 17 16 6 19 19 C 1.38277 * 120.07453 * 0.50141 * 18 17 16 20 20 C 1.38288 * 120.15268 * 359.75217 * 19 18 17 21 21 C 1.38109 * 120.06928 * 359.97438 * 20 19 18 22 22 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 0.96698 * 113.99401 * 59.99882 * 4 2 1 26 26 H 1.08996 * 109.46945 * 304.99450 * 5 2 1 27 27 H 1.09000 * 109.47314 * 64.99572 * 5 2 1 28 28 H 1.09006 * 109.46527 * 210.00108 * 7 6 5 29 29 H 1.08995 * 109.47040 * 329.99609 * 7 6 5 30 30 H 0.97003 * 119.99818 * 180.02562 * 11 10 8 31 31 H 1.08002 * 120.04319 * 359.97438 * 17 16 6 32 32 H 1.08007 * 119.95819 * 180.25193 * 18 17 16 33 33 H 1.08000 * 119.92632 * 179.72264 * 19 18 17 34 34 H 1.07993 * 119.96435 * 179.97438 * 20 19 18 35 35 H 1.08004 * 120.03384 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2493 6 7 3.5001 -0.6179 1.3110 7 6 4.1258 0.5099 2.0057 8 6 4.3421 0.1507 3.4532 9 1 4.0430 -0.8203 3.8192 10 6 4.9210 1.0623 4.3105 11 7 5.2848 2.2450 3.8650 12 14 5.1885 0.6174 6.1050 13 1 6.5255 -0.0085 6.2657 14 1 5.1140 1.8458 6.9360 15 1 4.1387 -0.3388 6.5396 16 6 4.2954 -1.5947 0.7075 17 6 3.7037 -2.6677 0.0533 18 6 4.4932 -3.6293 -0.5465 19 6 5.8711 -3.5302 -0.4874 20 6 6.4635 -2.4660 0.1676 21 6 5.6799 -1.4980 0.7647 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.7210 -0.2701 -1.9979 26 1 1.6055 -0.2618 2.1370 27 1 1.7516 -1.7716 1.2057 28 1 5.0851 0.7363 1.5402 29 1 3.4757 1.3824 1.9410 30 1 5.6924 2.8861 4.4681 31 1 2.6275 -2.7483 0.0108 32 1 4.0337 -4.4617 -1.0588 33 1 6.4862 -4.2858 -0.9533 34 1 7.5400 -2.3918 0.2123 35 1 6.1432 -0.6674 1.2764 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037687935.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:20 Heat of formation + Delta-G solvation = -23.494857 kcal Electronic energy + Delta-G solvation = -16774.633522 eV Core-core repulsion = 14158.442318 eV Total energy + Delta-G solvation = -2616.191204 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.87884 -37.18921 -35.10100 -32.68881 -31.20142 -30.12693 -28.87094 -27.38920 -24.95666 -22.85334 -21.64829 -20.90100 -19.55020 -17.37960 -16.46596 -16.41315 -15.16531 -14.85114 -14.50683 -14.13279 -13.70831 -13.44024 -13.11950 -12.69475 -12.49438 -12.32327 -11.95842 -11.77829 -11.38060 -11.20397 -11.04135 -10.76948 -10.64901 -10.57565 -10.22084 -9.90135 -9.74965 -9.56120 -8.79032 -8.49133 -8.09535 -6.40522 -5.97992 -4.15856 2.27881 2.47898 3.27282 3.33777 3.37335 4.14025 4.41632 4.56073 4.75480 5.19672 5.22638 5.33097 5.43795 5.64264 5.67896 5.76937 5.94071 5.95468 6.08737 6.20022 6.27091 6.38353 6.46947 6.56900 6.77471 7.07117 7.22189 7.32287 7.35708 7.45800 7.75056 7.83581 7.93743 8.18776 8.37264 8.59769 8.94559 9.51117 10.96829 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.018688 B = 0.009222 C = 0.006812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.939420 B = 3035.437922 C = 4109.560326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.079 3.921 3 H 0.055 0.945 4 O -0.552 6.552 5 C 0.135 3.865 6 N -0.609 5.609 7 C 0.251 3.749 8 C -0.530 4.530 9 H 0.059 0.941 10 C 0.061 3.939 11 N -0.895 5.895 12 Si 0.896 3.104 13 H -0.279 1.279 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.244 3.756 17 C -0.191 4.191 18 C -0.086 4.086 19 C -0.205 4.205 20 C -0.083 4.083 21 C -0.190 4.190 22 H 0.054 0.946 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.364 0.636 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.035 0.965 29 H 0.027 0.973 30 H 0.263 0.737 31 H 0.115 0.885 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.081 -5.355 -8.125 11.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.019 3.981 3 H 0.073 0.927 4 O -0.356 6.356 5 C 0.010 3.990 6 N -0.315 5.315 7 C 0.131 3.869 8 C -0.569 4.569 9 H 0.078 0.922 10 C -0.141 4.141 11 N -0.534 5.534 12 Si 0.723 3.277 13 H -0.205 1.205 14 H -0.212 1.212 15 H -0.199 1.199 16 C 0.139 3.861 17 C -0.214 4.214 18 C -0.105 4.105 19 C -0.225 4.225 20 C -0.102 4.102 21 C -0.212 4.212 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.210 0.790 26 H 0.105 0.895 27 H 0.087 0.913 28 H 0.053 0.947 29 H 0.045 0.955 30 H 0.073 0.927 31 H 0.133 0.867 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.126 0.874 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.842 -5.388 -7.482 10.915 hybrid contribution -0.135 0.345 0.659 0.756 sum -5.977 -5.043 -6.823 10.378 Atomic orbital electron populations 1.22461 0.96921 1.02407 1.02217 1.22484 0.91875 0.96494 0.87289 0.92690 1.86701 1.77011 1.56690 1.15230 1.21302 0.82447 1.00313 0.94956 1.46958 1.02864 1.25249 1.56399 1.19231 0.93657 0.82968 0.91018 1.21610 1.40275 1.00738 0.94294 0.92246 1.24962 0.95361 0.94838 0.98922 1.69932 1.41669 1.06069 1.35779 0.86534 0.78756 0.77814 0.84575 1.20522 1.21196 1.19901 1.17831 0.90449 0.87994 0.89869 1.20558 0.99232 0.96289 1.05282 1.20660 0.93621 0.97683 0.98511 1.20621 0.94629 1.00475 1.06781 1.20761 0.98590 0.94077 0.96792 1.20882 0.92257 1.02099 1.05955 0.92701 0.91578 0.92038 0.79018 0.89484 0.91320 0.94746 0.95525 0.92703 0.86697 0.87733 0.87939 0.87390 0.85403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.10 9.53 37.16 0.35 -1.74 16 2 C 0.08 1.19 3.82 -26.73 -0.10 1.08 16 3 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 4 O -0.55 -8.29 11.16 -35.23 -0.39 -8.68 16 5 C 0.13 2.41 5.00 -4.04 -0.02 2.39 16 6 N -0.61 -13.20 2.57 -173.12 -0.44 -13.64 16 7 C 0.25 6.32 4.91 -5.20 -0.03 6.29 16 8 C -0.53 -14.49 9.39 -34.44 -0.32 -14.82 16 9 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 10 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 11 N -0.90 -25.68 13.29 55.43 0.74 -24.94 16 12 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 16 C 0.24 5.22 6.30 -83.79 -0.53 4.69 16 17 C -0.19 -3.64 8.06 -39.38 -0.32 -3.96 16 18 C -0.09 -1.49 10.04 -39.61 -0.40 -1.89 16 19 C -0.20 -3.54 10.04 -39.55 -0.40 -3.94 16 20 C -0.08 -1.56 10.04 -39.61 -0.40 -1.96 16 21 C -0.19 -4.09 9.21 -39.38 -0.36 -4.45 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.36 3.91 9.08 45.56 0.41 4.32 16 26 H 0.09 1.56 8.07 -51.93 -0.42 1.14 16 27 H 0.07 1.17 6.19 -51.93 -0.32 0.85 16 28 H 0.03 0.93 6.20 -51.93 -0.32 0.61 16 29 H 0.03 0.70 8.07 -51.93 -0.42 0.28 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.12 2.08 5.53 -52.49 -0.29 1.79 16 32 H 0.10 1.52 8.06 -52.48 -0.42 1.10 16 33 H 0.10 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 35 H 0.13 3.00 6.14 -52.48 -0.32 2.67 16 LS Contribution 291.82 15.07 4.40 4.40 Total: -1.00 -29.93 291.82 -7.52 -37.45 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -4.18 Total: 5.77 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -2.61 Total: -16.71 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.29 Total: -38.58 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -0.39 Total: -8.68 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.93 -7.52 -37.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037687935.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.956 kcal (2) G-P(sol) polarization free energy of solvation -29.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds