Wall clock time and date at job start Mon Mar 30 2020 02:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46657 * 2 1 4 4 N 1.46900 * 109.47273 * 240.00210 * 2 1 3 5 5 C 1.52993 * 109.47513 * 120.00023 * 2 1 3 6 6 C 1.52998 * 109.47402 * 185.00404 * 5 2 1 7 7 C 1.50701 * 109.47366 * 180.02562 * 6 5 2 8 8 C 1.38302 * 119.93101 * 89.99408 * 7 6 5 9 9 C 1.38105 * 120.06695 * 180.02562 * 8 7 6 10 10 C 1.38871 * 119.93200 * 359.97438 * 9 8 7 11 11 O 1.35753 * 120.07178 * 180.02562 * 10 9 8 12 12 C 1.34831 * 116.99766 * 354.46580 * 11 10 9 13 13 H 1.08005 * 119.99910 * 5.05947 * 12 11 10 14 14 C 1.38653 * 120.00325 * 185.05796 * 12 11 10 15 15 N 1.31555 * 119.99726 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00359 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47111 * 59.99485 * 16 14 12 18 18 H 1.48495 * 109.47007 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47035 * 299.99958 * 16 14 12 20 20 C 1.38880 * 119.86456 * 0.27348 * 10 9 8 21 21 C 1.38102 * 119.92774 * 359.49328 * 20 10 9 22 22 H 1.08997 * 109.46773 * 299.99587 * 1 2 3 23 23 H 1.08999 * 109.47038 * 60.00120 * 1 2 3 24 24 H 1.09004 * 109.46657 * 180.02562 * 1 2 3 25 25 H 1.00895 * 111.00225 * 176.03935 * 4 2 1 26 26 H 1.00897 * 111.00076 * 299.99862 * 4 2 1 27 27 H 1.09000 * 109.47045 * 65.00252 * 5 2 1 28 28 H 1.09003 * 109.47394 * 304.99996 * 5 2 1 29 29 H 1.08992 * 109.47261 * 59.99661 * 6 5 2 30 30 H 1.09000 * 109.46763 * 299.99684 * 6 5 2 31 31 H 1.08001 * 119.96675 * 0.02562 * 8 7 6 32 32 H 1.07996 * 120.03107 * 179.97438 * 9 8 7 33 33 H 0.97003 * 120.00171 * 179.97438 * 15 14 12 34 34 H 1.08001 * 120.03810 * 179.72208 * 20 10 9 35 35 H 1.07994 * 119.96815 * 180.22560 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6924 -1.1994 5 6 2.0401 -0.7212 1.2491 6 6 3.5649 -0.6131 1.3136 7 6 4.0674 -1.3241 2.5437 8 6 4.3959 -2.6660 2.4794 9 6 4.8562 -3.3204 3.6051 10 6 4.9895 -2.6295 4.8023 11 8 5.4421 -3.2699 5.9105 12 6 5.6356 -4.6006 5.8123 13 1 5.5103 -5.0957 4.8606 14 6 5.9954 -5.3335 6.9330 15 7 6.1485 -4.7303 8.0920 16 14 6.2642 -7.1770 6.7968 17 1 7.3545 -7.4478 5.8257 18 1 6.6380 -7.7222 8.1265 19 1 5.0130 -7.8265 6.3300 20 6 4.6538 -1.2833 4.8650 21 6 4.1987 -0.6334 3.7347 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 3.0262 -0.6499 -1.2559 26 1 1.6963 -1.6479 -1.2228 27 1 1.7518 -1.7715 1.2055 28 1 1.6056 -0.2617 2.1370 29 1 3.8532 0.4370 1.3572 30 1 3.9995 -1.0727 0.4259 31 1 4.2925 -3.2026 1.5479 32 1 5.1122 -4.3684 3.5543 33 1 6.3999 -5.2430 8.8762 34 1 4.7521 -0.7444 5.7958 35 1 3.9410 0.4143 3.7818 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037698069.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:23 Heat of formation + Delta-G solvation = -25.753655 kcal Electronic energy + Delta-G solvation = -15822.071750 eV Core-core repulsion = 13205.782598 eV Total energy + Delta-G solvation = -2616.289152 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.13870 -37.55201 -36.23102 -32.53739 -31.63161 -30.18796 -29.24231 -27.57635 -25.39139 -23.36949 -21.98850 -20.64968 -20.23432 -17.99323 -16.98556 -16.16582 -15.16833 -14.85928 -14.59996 -14.37858 -14.08850 -13.57934 -13.52809 -13.16727 -12.73663 -12.57362 -12.27934 -11.98842 -11.77318 -11.69915 -11.20760 -11.05608 -10.87151 -10.62421 -10.57102 -10.49294 -10.41432 -9.34996 -8.87272 -8.76165 -8.20651 -7.16074 -6.46128 -4.05270 2.18843 2.30162 3.11789 3.12851 3.15765 3.95527 4.45768 4.51296 4.82178 5.03502 5.07129 5.10889 5.27625 5.32762 5.49980 5.63442 5.70476 5.74263 5.76589 5.87106 5.93015 6.06498 6.12742 6.19625 6.32534 6.44012 6.69615 6.89889 7.04392 7.05237 7.23256 7.32918 7.37100 7.42532 7.81423 7.98643 8.99336 9.69625 10.71913 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.044765 B = 0.004498 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.343543 B = 6223.075847 C = 6527.107106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.083 3.917 3 H 0.078 0.922 4 N -0.847 5.847 5 C -0.149 4.149 6 C -0.061 4.061 7 C -0.183 4.183 8 C -0.070 4.070 9 C -0.232 4.232 10 C 0.151 3.849 11 O -0.179 6.179 12 C -0.393 4.393 13 H 0.091 0.909 14 C 0.040 3.960 15 N -0.863 5.863 16 Si 0.941 3.059 17 H -0.270 1.270 18 H -0.277 1.277 19 H -0.270 1.270 20 C -0.191 4.191 21 C -0.072 4.072 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.341 0.659 26 H 0.338 0.662 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.103 0.897 32 H 0.126 0.874 33 H 0.271 0.729 34 H 0.116 0.884 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.570 5.642 -12.607 15.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.028 4.028 3 H 0.096 0.904 4 N -0.376 5.376 5 C -0.188 4.188 6 C -0.098 4.098 7 C -0.183 4.183 8 C -0.088 4.088 9 C -0.252 4.252 10 C 0.098 3.902 11 O -0.082 6.082 12 C -0.470 4.470 13 H 0.108 0.892 14 C -0.165 4.165 15 N -0.498 5.498 16 Si 0.765 3.235 17 H -0.195 1.195 18 H -0.202 1.202 19 H -0.195 1.195 20 C -0.210 4.210 21 C -0.090 4.090 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.154 0.846 26 H 0.150 0.850 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.121 0.879 32 H 0.144 0.856 33 H 0.080 0.920 34 H 0.134 0.866 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.867 6.203 -12.537 15.582 hybrid contribution 0.668 -1.680 0.698 1.938 sum -6.198 4.523 -11.839 14.108 Atomic orbital electron populations 1.21797 0.94817 1.01876 1.01727 1.21501 0.95227 0.98141 0.87944 0.90421 1.59023 1.16403 1.21275 1.40912 1.22461 0.96191 1.01095 0.99073 1.20317 0.94402 0.99515 0.95604 1.19245 1.09431 0.94554 0.95111 1.20581 0.97600 0.93611 0.97000 1.21151 1.09656 1.01192 0.93161 1.19388 0.91399 0.92072 0.87376 1.83979 1.71390 1.22502 1.30334 1.21277 1.48727 0.80006 0.96953 0.89177 1.25284 0.96620 1.00365 0.94204 1.70028 1.43644 1.36578 0.99573 0.85786 0.79131 0.80557 0.77989 1.19494 1.20236 1.19512 1.20219 1.08656 0.93092 0.99081 1.20493 0.98388 0.98236 0.91879 0.92285 0.92231 0.92902 0.84596 0.85004 0.92046 0.91448 0.92053 0.92528 0.87851 0.85641 0.91956 0.86577 0.87241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.49 37.16 0.35 -0.97 16 2 C 0.08 0.82 3.41 -67.71 -0.23 0.59 16 3 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 4 N -0.85 -8.01 9.18 -4.67 -0.04 -8.05 16 5 C -0.15 -1.71 4.84 -26.74 -0.13 -1.84 16 6 C -0.06 -0.77 5.11 -27.88 -0.14 -0.91 16 7 C -0.18 -3.07 5.14 -104.57 -0.54 -3.61 16 8 C -0.07 -1.27 9.69 -39.61 -0.38 -1.66 16 9 C -0.23 -5.09 9.17 -39.40 -0.36 -5.45 16 10 C 0.15 3.70 6.65 -39.11 -0.26 3.44 16 11 O -0.18 -5.15 9.76 0.04 0.00 -5.15 16 12 C -0.39 -11.08 9.49 30.89 0.29 -10.79 16 13 H 0.09 2.34 5.20 -52.48 -0.27 2.07 16 14 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 15 N -0.86 -25.43 13.67 55.48 0.76 -24.68 16 16 Si 0.94 20.54 29.55 -169.99 -5.02 15.52 16 17 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 18 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 19 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 20 C -0.19 -4.08 9.99 -39.39 -0.39 -4.48 16 21 C -0.07 -1.28 9.69 -39.61 -0.38 -1.67 16 22 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.34 3.03 7.55 -39.29 -0.30 2.73 16 26 H 0.34 2.99 9.00 -39.29 -0.35 2.63 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 30 H 0.06 0.65 6.81 -51.93 -0.35 0.30 16 31 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.13 2.75 5.64 -52.49 -0.30 2.45 16 33 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 35 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 295.27 15.07 4.45 4.45 Total: -1.00 -30.11 295.27 -7.06 -37.18 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -4.93 Total: 7.07 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: -2.27 Total: -26.34 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: 0.72 Total: -32.72 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: 0.00 Total: -5.15 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.11 -7.06 -37.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037698069.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.422 kcal (2) G-P(sol) polarization free energy of solvation -30.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds