Wall clock time and date at job start Mon Mar 30 2020 02:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46657 * 2 1 4 4 N 1.46900 * 109.47273 * 240.00210 * 2 1 3 5 5 C 1.52993 * 109.47513 * 120.00023 * 2 1 3 6 6 C 1.52998 * 109.47402 * 185.00404 * 5 2 1 7 7 C 1.50701 * 109.47366 * 180.02562 * 6 5 2 8 8 C 1.38302 * 119.93101 * 89.99408 * 7 6 5 9 9 C 1.38105 * 120.06695 * 180.02562 * 8 7 6 10 10 C 1.38871 * 119.93200 * 359.97438 * 9 8 7 11 11 O 1.35753 * 120.07178 * 180.02562 * 10 9 8 12 12 C 1.34831 * 116.99766 * 354.46580 * 11 10 9 13 13 H 1.08005 * 119.99910 * 5.05947 * 12 11 10 14 14 C 1.38653 * 120.00325 * 185.05796 * 12 11 10 15 15 N 1.31555 * 119.99726 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00359 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47111 * 59.99485 * 16 14 12 18 18 H 1.48495 * 109.47007 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47035 * 299.99958 * 16 14 12 20 20 C 1.38880 * 119.86456 * 0.27348 * 10 9 8 21 21 C 1.38102 * 119.92774 * 359.49328 * 20 10 9 22 22 H 1.08997 * 109.46773 * 299.99587 * 1 2 3 23 23 H 1.08999 * 109.47038 * 60.00120 * 1 2 3 24 24 H 1.09004 * 109.46657 * 180.02562 * 1 2 3 25 25 H 1.00895 * 111.00225 * 176.03935 * 4 2 1 26 26 H 1.00897 * 111.00076 * 299.99862 * 4 2 1 27 27 H 1.09000 * 109.47045 * 65.00252 * 5 2 1 28 28 H 1.09003 * 109.47394 * 304.99996 * 5 2 1 29 29 H 1.08992 * 109.47261 * 59.99661 * 6 5 2 30 30 H 1.09000 * 109.46763 * 299.99684 * 6 5 2 31 31 H 1.08001 * 119.96675 * 0.02562 * 8 7 6 32 32 H 1.07996 * 120.03107 * 179.97438 * 9 8 7 33 33 H 0.97003 * 120.00171 * 179.97438 * 15 14 12 34 34 H 1.08001 * 120.03810 * 179.72208 * 20 10 9 35 35 H 1.07994 * 119.96815 * 180.22560 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6924 -1.1994 5 6 2.0401 -0.7212 1.2491 6 6 3.5649 -0.6131 1.3136 7 6 4.0674 -1.3241 2.5437 8 6 4.3959 -2.6660 2.4794 9 6 4.8562 -3.3204 3.6051 10 6 4.9895 -2.6295 4.8023 11 8 5.4421 -3.2699 5.9105 12 6 5.6356 -4.6006 5.8123 13 1 5.5103 -5.0957 4.8606 14 6 5.9954 -5.3335 6.9330 15 7 6.1485 -4.7303 8.0920 16 14 6.2642 -7.1770 6.7968 17 1 7.3545 -7.4478 5.8257 18 1 6.6380 -7.7222 8.1265 19 1 5.0130 -7.8265 6.3300 20 6 4.6538 -1.2833 4.8650 21 6 4.1987 -0.6334 3.7347 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 3.0262 -0.6499 -1.2559 26 1 1.6963 -1.6479 -1.2228 27 1 1.7518 -1.7715 1.2055 28 1 1.6056 -0.2617 2.1370 29 1 3.8532 0.4370 1.3572 30 1 3.9995 -1.0727 0.4259 31 1 4.2925 -3.2026 1.5479 32 1 5.1122 -4.3684 3.5543 33 1 6.3999 -5.2430 8.8762 34 1 4.7521 -0.7444 5.7958 35 1 3.9410 0.4143 3.7818 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037698069.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:22 Heat of formation + Delta-G solvation = -45.504825 kcal Electronic energy + Delta-G solvation = -15822.928225 eV Core-core repulsion = 13205.782598 eV Total energy + Delta-G solvation = -2617.145627 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.82721 -38.88740 -37.50985 -34.40831 -33.02178 -31.80192 -30.02117 -28.92123 -27.31445 -24.56929 -23.64014 -21.90139 -21.30596 -19.85220 -18.84795 -16.99708 -16.54284 -16.41400 -16.02307 -15.64255 -15.55445 -15.27235 -14.82307 -14.52974 -14.29619 -13.77386 -13.50680 -13.49006 -13.06529 -12.76443 -12.67215 -12.44001 -12.19462 -12.16368 -11.85066 -11.69448 -11.62520 -11.17526 -10.78433 -9.80571 -9.56706 -8.86718 -8.48612 -6.17187 0.56749 0.68880 1.33441 1.44312 1.50041 2.16707 2.80033 3.13620 3.51311 3.73283 3.91253 4.01036 4.12774 4.19709 4.27175 4.41959 4.56141 4.64636 4.71813 4.79540 4.81705 4.95763 5.04790 5.10445 5.14679 5.28964 5.32112 5.35928 5.42250 5.58203 5.70133 5.82980 6.01116 6.22920 6.34170 6.66324 6.95842 7.77088 8.74618 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.044765 B = 0.004498 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.343543 B = 6223.075847 C = 6527.107106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.090 3.910 3 H 0.082 0.918 4 N -0.850 5.850 5 C -0.142 4.142 6 C -0.058 4.058 7 C -0.156 4.156 8 C -0.070 4.070 9 C -0.242 4.242 10 C 0.107 3.893 11 O -0.234 6.234 12 C -0.417 4.417 13 H 0.101 0.899 14 C -0.023 4.023 15 N -0.922 5.922 16 Si 1.019 2.981 17 H -0.257 1.257 18 H -0.271 1.271 19 H -0.257 1.257 20 C -0.204 4.204 21 C -0.067 4.067 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.345 0.655 26 H 0.342 0.658 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.138 0.862 32 H 0.117 0.883 33 H 0.273 0.727 34 H 0.111 0.889 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.538 6.128 -15.658 18.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.022 4.022 3 H 0.100 0.900 4 N -0.380 5.380 5 C -0.182 4.182 6 C -0.096 4.096 7 C -0.156 4.156 8 C -0.088 4.088 9 C -0.261 4.261 10 C 0.057 3.943 11 O -0.141 6.141 12 C -0.493 4.493 13 H 0.118 0.882 14 C -0.220 4.220 15 N -0.560 5.560 16 Si 0.838 3.162 17 H -0.181 1.181 18 H -0.195 1.195 19 H -0.182 1.182 20 C -0.224 4.224 21 C -0.085 4.085 22 H 0.081 0.919 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.159 0.841 26 H 0.154 0.846 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.156 0.844 32 H 0.135 0.865 33 H 0.082 0.918 34 H 0.129 0.871 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.853 6.724 -15.646 18.753 hybrid contribution 0.839 -1.564 1.380 2.248 sum -7.014 5.160 -14.265 16.713 Atomic orbital electron populations 1.21792 0.94436 1.01897 1.02065 1.21433 0.95517 0.98100 0.87104 0.89962 1.59018 1.16830 1.21655 1.40509 1.22396 0.95043 1.00900 0.99851 1.20409 0.95184 1.00141 0.93835 1.19842 1.05478 0.93998 0.96319 1.20974 0.96332 0.94480 0.97009 1.21270 1.10172 1.01065 0.93637 1.19954 0.93384 0.93426 0.87572 1.83939 1.74499 1.22997 1.32707 1.21789 1.49145 0.80515 0.97823 0.88210 1.26604 0.96012 1.05927 0.93475 1.70179 1.46296 1.38872 1.00646 0.84649 0.79698 0.73420 0.78454 1.18092 1.19519 1.18180 1.20493 1.09061 0.92275 1.00525 1.20936 0.96737 0.99962 0.90889 0.91861 0.92044 0.93065 0.84072 0.84551 0.92782 0.92011 0.90250 0.90579 0.84390 0.86516 0.91800 0.87056 0.83505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.49 71.98 0.68 -1.52 16 2 C 0.09 1.43 3.41 44.91 0.15 1.58 16 3 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 4 N -0.85 -12.88 9.18 -168.68 -1.55 -14.43 16 5 C -0.14 -2.69 4.84 30.59 0.15 -2.55 16 6 C -0.06 -1.19 5.11 29.85 0.15 -1.04 16 7 C -0.16 -4.69 5.14 -19.83 -0.10 -4.80 16 8 C -0.07 -2.39 9.69 22.25 0.22 -2.17 16 9 C -0.24 -10.68 9.17 22.39 0.21 -10.47 16 10 C 0.11 5.42 6.65 22.58 0.15 5.57 16 11 O -0.23 -14.41 9.76 -22.78 -0.22 -14.64 16 12 C -0.42 -24.67 9.49 67.92 0.64 -24.03 16 13 H 0.10 5.41 5.20 -2.91 -0.02 5.40 16 14 C -0.02 -1.31 5.49 84.83 0.47 -0.85 16 15 N -0.92 -57.23 13.67 21.61 0.30 -56.93 16 16 Si 1.02 43.11 29.55 68.60 2.03 45.14 16 17 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 18 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 19 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 20 C -0.20 -8.84 9.99 22.39 0.22 -8.62 16 21 C -0.07 -2.25 9.69 22.25 0.22 -2.03 16 22 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.05 0.79 8.14 -2.39 -0.02 0.78 16 25 H 0.35 4.68 7.55 -89.70 -0.68 4.00 16 26 H 0.34 4.84 9.00 -89.70 -0.81 4.03 16 27 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.08 1.44 8.08 -2.39 -0.02 1.42 16 30 H 0.08 1.34 6.81 -2.39 -0.02 1.33 16 31 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 32 H 0.12 5.24 5.64 -2.91 -0.02 5.23 16 33 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 34 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 35 H 0.15 3.81 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -69.76 295.27 3.32 -66.44 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: -0.39 Total: 25.34 kcal Atomic # 6 Polarization: -54.08 SS G_CDS: 3.16 Total: -50.92 kcal Atomic # 7 Polarization: -70.11 SS G_CDS: -1.25 Total: -71.36 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.22 Total: -14.64 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -69.76 3.32 -66.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037698069.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.937 kcal (2) G-P(sol) polarization free energy of solvation -69.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds