Wall clock time and date at job start Mon Mar 30 2020 02:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46914 * 2 1 4 4 N 1.46899 * 109.46942 * 119.99971 * 2 1 3 5 5 C 1.52997 * 109.47087 * 240.00106 * 2 1 3 6 6 C 1.53008 * 109.46977 * 174.99965 * 5 2 1 7 7 C 1.50697 * 109.47149 * 179.97438 * 6 5 2 8 8 C 1.38302 * 119.93253 * 269.72792 * 7 6 5 9 9 C 1.38099 * 120.07149 * 179.72632 * 8 7 6 10 10 C 1.38881 * 119.92741 * 0.56800 * 9 8 7 11 11 O 1.35748 * 120.06969 * 179.68703 * 10 9 8 12 12 C 1.34831 * 117.00218 * 174.49027 * 11 10 9 13 13 H 1.07996 * 119.99825 * 5.04845 * 12 11 10 14 14 C 1.38649 * 120.00055 * 185.05477 * 12 11 10 15 15 N 1.31560 * 120.00166 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99994 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47305 * 90.00120 * 16 14 12 18 18 H 1.48499 * 109.47252 * 209.99937 * 16 14 12 19 19 H 1.48499 * 109.47154 * 329.99676 * 16 14 12 20 20 C 1.38881 * 119.86183 * 359.70324 * 10 9 8 21 21 C 1.38102 * 119.93154 * 0.02562 * 20 10 9 22 22 H 1.09004 * 109.47183 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47733 * 299.99919 * 1 2 3 24 24 H 1.09006 * 109.47414 * 59.99902 * 1 2 3 25 25 H 1.00906 * 111.00144 * 300.00204 * 4 2 1 26 26 H 1.00903 * 110.99856 * 63.95523 * 4 2 1 27 27 H 1.09000 * 109.47064 * 294.99595 * 5 2 1 28 28 H 1.08995 * 109.47247 * 55.00502 * 5 2 1 29 29 H 1.08999 * 109.47176 * 300.00204 * 6 5 2 30 30 H 1.09004 * 109.46762 * 60.00055 * 6 5 2 31 31 H 1.08001 * 119.96366 * 359.97438 * 8 7 6 32 32 H 1.08001 * 120.03776 * 180.27304 * 9 8 7 33 33 H 0.97000 * 120.00594 * 180.02562 * 15 14 12 34 34 H 1.07993 * 120.03388 * 179.97438 * 20 10 9 35 35 H 1.07996 * 119.96724 * 179.97438 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0399 -0.7212 -1.2492 6 6 3.5648 -0.6132 -1.3137 7 6 4.0673 -1.3241 -2.5438 8 6 4.4012 -2.6646 -2.4781 9 6 4.8565 -3.3203 -3.6050 10 6 4.9902 -2.6293 -4.8022 11 8 5.4435 -3.2694 -5.9101 12 6 5.4414 -2.5720 -7.0640 13 1 5.1669 -1.5275 -7.0631 14 6 5.7916 -3.1957 -8.2517 15 7 6.1263 -4.4680 -8.2528 16 14 5.7880 -2.2297 -9.8505 17 1 7.1258 -1.6216 -10.0644 18 1 5.4726 -3.1416 -10.9792 19 1 4.7627 -1.1578 -9.7788 20 6 4.6594 -1.2818 -4.8635 21 6 4.1993 -0.6332 -3.7345 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3635 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.6960 -0.2350 2.0386 26 1 1.7501 -1.6648 1.1909 27 1 1.7516 -1.7715 -1.2055 28 1 1.6054 -0.2617 -2.1369 29 1 3.8532 0.4370 -1.3572 30 1 3.9994 -1.0728 -0.4259 31 1 4.3019 -3.2002 -1.5455 32 1 5.1129 -4.3682 -3.5542 33 1 6.3717 -4.9044 -9.0836 34 1 4.7626 -0.7416 -5.7930 35 1 3.9423 0.4147 -3.7814 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037698070.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:24 Heat of formation + Delta-G solvation = -24.966797 kcal Electronic energy + Delta-G solvation = -15789.808665 eV Core-core repulsion = 13173.553633 eV Total energy + Delta-G solvation = -2616.255032 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.03029 -37.40946 -36.20660 -32.53469 -31.69909 -30.08763 -29.07114 -27.52801 -25.34090 -23.30819 -21.88676 -20.64175 -20.10846 -17.91523 -16.88472 -16.35915 -15.04991 -14.65992 -14.49337 -14.36515 -13.70245 -13.58700 -13.35605 -13.20798 -12.89492 -12.63455 -12.33733 -11.96840 -11.74063 -11.64298 -11.14514 -11.08787 -10.73251 -10.54896 -10.45876 -10.35019 -10.21134 -9.27012 -8.84067 -8.75138 -8.11126 -7.07020 -6.40764 -3.99548 2.27971 2.40750 3.14973 3.15716 3.20556 4.00115 4.44698 4.58229 4.79005 4.99307 5.12893 5.16502 5.34223 5.39581 5.48733 5.67119 5.77172 5.78720 5.84523 5.93551 6.03910 6.10274 6.26631 6.30295 6.53944 6.56968 6.80341 7.00156 7.03736 7.13197 7.30691 7.33578 7.48604 7.51103 7.91182 8.04620 9.05102 9.76775 10.77604 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.049654 B = 0.004409 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.770192 B = 6349.740763 C = 6641.326352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.084 3.916 3 H 0.078 0.922 4 N -0.842 5.842 5 C -0.106 4.106 6 C -0.053 4.053 7 C -0.180 4.180 8 C -0.072 4.072 9 C -0.192 4.192 10 C 0.150 3.850 11 O -0.181 6.181 12 C -0.391 4.391 13 H 0.091 0.909 14 C 0.038 3.962 15 N -0.865 5.865 16 Si 0.940 3.060 17 H -0.273 1.273 18 H -0.278 1.278 19 H -0.268 1.268 20 C -0.233 4.233 21 C -0.072 4.072 22 H 0.053 0.947 23 H 0.050 0.950 24 H 0.060 0.940 25 H 0.336 0.664 26 H 0.339 0.661 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.269 0.731 34 H 0.125 0.875 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.377 7.759 12.926 17.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.028 4.028 3 H 0.096 0.904 4 N -0.371 5.371 5 C -0.144 4.144 6 C -0.091 4.091 7 C -0.181 4.181 8 C -0.090 4.090 9 C -0.211 4.211 10 C 0.097 3.903 11 O -0.085 6.085 12 C -0.468 4.468 13 H 0.108 0.892 14 C -0.166 4.166 15 N -0.500 5.500 16 Si 0.765 3.235 17 H -0.199 1.199 18 H -0.203 1.203 19 H -0.192 1.192 20 C -0.252 4.252 21 C -0.090 4.090 22 H 0.073 0.927 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.148 0.852 26 H 0.152 0.848 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.128 0.872 32 H 0.133 0.867 33 H 0.079 0.921 34 H 0.143 0.857 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.479 7.539 12.431 16.350 hybrid contribution -1.099 0.361 -0.702 1.353 sum -8.578 7.900 11.729 16.540 Atomic orbital electron populations 1.22654 0.98200 1.01896 1.01957 1.21534 0.91542 0.98615 0.91076 0.90361 1.58905 1.67416 1.06737 1.04017 1.21654 0.96644 1.00292 0.95800 1.20225 0.93970 0.99237 0.95643 1.19403 1.08757 0.94654 0.95254 1.20514 0.98053 0.93769 0.96671 1.20221 1.09421 0.99914 0.91584 1.19388 0.91511 0.90972 0.88461 1.83977 1.70920 1.39616 1.13968 1.21315 1.47977 0.94901 0.82564 0.89162 1.25272 0.96591 0.96037 0.98656 1.70041 1.42246 1.09754 1.27976 0.85725 0.78911 0.78809 0.80053 1.19912 1.20285 1.19243 1.21157 1.09346 0.95194 0.99499 1.20622 0.97913 0.98214 0.92232 0.92745 0.93081 0.92050 0.85230 0.84850 0.92153 0.91779 0.92635 0.90969 0.87215 0.86694 0.92099 0.85730 0.87761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.57 9.48 37.16 0.35 -1.22 16 2 C 0.08 0.81 3.37 -67.72 -0.23 0.58 16 3 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 4 N -0.84 -7.51 8.71 -4.67 -0.04 -7.55 16 5 C -0.11 -1.27 4.81 -26.73 -0.13 -1.40 16 6 C -0.05 -0.74 5.23 -27.88 -0.15 -0.89 16 7 C -0.18 -3.16 5.14 -104.58 -0.54 -3.70 16 8 C -0.07 -1.33 9.69 -39.61 -0.38 -1.71 16 9 C -0.19 -4.20 9.99 -39.39 -0.39 -4.59 16 10 C 0.15 3.74 6.65 -39.11 -0.26 3.48 16 11 O -0.18 -5.30 9.76 0.05 0.00 -5.30 16 12 C -0.39 -11.17 9.49 30.88 0.29 -10.87 16 13 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 14 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 15 N -0.86 -25.77 13.67 55.48 0.76 -25.01 16 16 Si 0.94 20.83 29.55 -169.99 -5.02 15.80 16 17 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 18 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 19 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 20 C -0.23 -5.22 9.17 -39.39 -0.36 -5.58 16 21 C -0.07 -1.36 9.69 -39.61 -0.38 -1.74 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.34 2.40 9.04 -39.29 -0.36 2.05 16 26 H 0.34 2.83 8.98 -39.29 -0.35 2.47 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.75 8.08 -51.93 -0.42 0.33 16 30 H 0.07 1.00 7.69 -51.93 -0.40 0.60 16 31 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 32 H 0.11 2.43 8.06 -52.49 -0.42 2.00 16 33 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.13 2.79 5.64 -52.49 -0.30 2.50 16 35 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 297.18 15.07 4.48 4.48 Total: -1.00 -30.74 297.18 -7.14 -37.87 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -5.04 Total: 6.38 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: -2.27 Total: -26.67 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: 0.72 Total: -32.57 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: 0.00 Total: -5.30 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.74 -7.14 -37.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037698070.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.906 kcal (2) G-P(sol) polarization free energy of solvation -30.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds