Wall clock time and date at job start Mon Mar 30 2020 02:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46914 * 2 1 4 4 N 1.46899 * 109.46942 * 119.99971 * 2 1 3 5 5 C 1.52997 * 109.47087 * 240.00106 * 2 1 3 6 6 C 1.53008 * 109.46977 * 174.99965 * 5 2 1 7 7 C 1.50697 * 109.47149 * 179.97438 * 6 5 2 8 8 C 1.38302 * 119.93253 * 269.72792 * 7 6 5 9 9 C 1.38099 * 120.07149 * 179.72632 * 8 7 6 10 10 C 1.38881 * 119.92741 * 0.56800 * 9 8 7 11 11 O 1.35748 * 120.06969 * 179.68703 * 10 9 8 12 12 C 1.34831 * 117.00218 * 174.49027 * 11 10 9 13 13 H 1.07996 * 119.99825 * 5.04845 * 12 11 10 14 14 C 1.38649 * 120.00055 * 185.05477 * 12 11 10 15 15 N 1.31560 * 120.00166 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99994 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47305 * 90.00120 * 16 14 12 18 18 H 1.48499 * 109.47252 * 209.99937 * 16 14 12 19 19 H 1.48499 * 109.47154 * 329.99676 * 16 14 12 20 20 C 1.38881 * 119.86183 * 359.70324 * 10 9 8 21 21 C 1.38102 * 119.93154 * 0.02562 * 20 10 9 22 22 H 1.09004 * 109.47183 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47733 * 299.99919 * 1 2 3 24 24 H 1.09006 * 109.47414 * 59.99902 * 1 2 3 25 25 H 1.00906 * 111.00144 * 300.00204 * 4 2 1 26 26 H 1.00903 * 110.99856 * 63.95523 * 4 2 1 27 27 H 1.09000 * 109.47064 * 294.99595 * 5 2 1 28 28 H 1.08995 * 109.47247 * 55.00502 * 5 2 1 29 29 H 1.08999 * 109.47176 * 300.00204 * 6 5 2 30 30 H 1.09004 * 109.46762 * 60.00055 * 6 5 2 31 31 H 1.08001 * 119.96366 * 359.97438 * 8 7 6 32 32 H 1.08001 * 120.03776 * 180.27304 * 9 8 7 33 33 H 0.97000 * 120.00594 * 180.02562 * 15 14 12 34 34 H 1.07993 * 120.03388 * 179.97438 * 20 10 9 35 35 H 1.07996 * 119.96724 * 179.97438 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0399 -0.7212 -1.2492 6 6 3.5648 -0.6132 -1.3137 7 6 4.0673 -1.3241 -2.5438 8 6 4.4012 -2.6646 -2.4781 9 6 4.8565 -3.3203 -3.6050 10 6 4.9902 -2.6293 -4.8022 11 8 5.4435 -3.2694 -5.9101 12 6 5.4414 -2.5720 -7.0640 13 1 5.1669 -1.5275 -7.0631 14 6 5.7916 -3.1957 -8.2517 15 7 6.1263 -4.4680 -8.2528 16 14 5.7880 -2.2297 -9.8505 17 1 7.1258 -1.6216 -10.0644 18 1 5.4726 -3.1416 -10.9792 19 1 4.7627 -1.1578 -9.7788 20 6 4.6594 -1.2818 -4.8635 21 6 4.1993 -0.6332 -3.7345 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3635 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.6960 -0.2350 2.0386 26 1 1.7501 -1.6648 1.1909 27 1 1.7516 -1.7715 -1.2055 28 1 1.6054 -0.2617 -2.1369 29 1 3.8532 0.4370 -1.3572 30 1 3.9994 -1.0728 -0.4259 31 1 4.3019 -3.2002 -1.5455 32 1 5.1129 -4.3682 -3.5542 33 1 6.3717 -4.9044 -9.0836 34 1 4.7626 -0.7416 -5.7930 35 1 3.9423 0.4147 -3.7814 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037698070.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:24 Heat of formation + Delta-G solvation = -45.196168 kcal Electronic energy + Delta-G solvation = -15790.685876 eV Core-core repulsion = 13173.553633 eV Total energy + Delta-G solvation = -2617.132243 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.77854 -38.77973 -37.46114 -34.40175 -33.15165 -31.75416 -29.92068 -28.80478 -27.29992 -24.56385 -23.58979 -21.81792 -21.31674 -19.81524 -18.80534 -17.14925 -16.42019 -16.39402 -15.98754 -15.63621 -15.44584 -15.12477 -14.56983 -14.28457 -14.27753 -13.87120 -13.68777 -13.45653 -13.19455 -12.79141 -12.74556 -12.40485 -12.13924 -12.11568 -11.94850 -11.57285 -11.41364 -11.12859 -10.76622 -9.76152 -9.49972 -8.83028 -8.46587 -6.14798 0.61054 0.73851 1.34614 1.44262 1.52465 2.18253 2.83421 3.17333 3.54487 3.77617 3.89162 4.09314 4.18303 4.25257 4.32982 4.45970 4.56107 4.67206 4.74080 4.83568 4.89491 4.98987 5.07856 5.14352 5.19216 5.24026 5.32035 5.44469 5.51671 5.63523 5.73730 5.91881 6.03959 6.27920 6.37561 6.72112 6.98093 7.80153 8.76993 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.049654 B = 0.004409 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.770192 B = 6349.740763 C = 6641.326352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.090 3.910 3 H 0.080 0.920 4 N -0.849 5.849 5 C -0.103 4.103 6 C -0.048 4.048 7 C -0.155 4.155 8 C -0.067 4.067 9 C -0.204 4.204 10 C 0.106 3.894 11 O -0.235 6.235 12 C -0.415 4.415 13 H 0.100 0.900 14 C -0.024 4.024 15 N -0.922 5.922 16 Si 1.019 2.981 17 H -0.263 1.263 18 H -0.270 1.270 19 H -0.253 1.253 20 C -0.242 4.242 21 C -0.072 4.072 22 H 0.052 0.948 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.347 0.653 26 H 0.342 0.658 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.145 0.855 32 H 0.111 0.889 33 H 0.272 0.728 34 H 0.117 0.883 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.687 10.065 14.746 20.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.021 4.021 3 H 0.098 0.902 4 N -0.379 5.379 5 C -0.141 4.141 6 C -0.085 4.085 7 C -0.155 4.155 8 C -0.085 4.085 9 C -0.223 4.223 10 C 0.056 3.944 11 O -0.142 6.142 12 C -0.491 4.491 13 H 0.118 0.882 14 C -0.221 4.221 15 N -0.561 5.561 16 Si 0.838 3.162 17 H -0.188 1.188 18 H -0.195 1.195 19 H -0.177 1.177 20 C -0.261 4.261 21 C -0.090 4.090 22 H 0.071 0.929 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.160 0.840 26 H 0.155 0.845 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.163 0.837 32 H 0.129 0.871 33 H 0.081 0.919 34 H 0.135 0.865 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.810 9.875 14.317 19.496 hybrid contribution -0.787 -0.275 -0.912 1.236 sum -9.597 9.599 13.405 19.077 Atomic orbital electron populations 1.22602 0.97223 1.01985 1.02517 1.21400 0.92239 0.98275 0.90203 0.90161 1.58888 1.67600 1.07120 1.04295 1.21600 0.95003 1.00408 0.97111 1.20273 0.95260 0.99467 0.93543 1.19964 1.05107 0.94249 0.96215 1.20920 0.96408 0.94406 0.96729 1.20485 1.09819 1.00144 0.91870 1.19940 0.93529 0.92487 0.88447 1.83937 1.73895 1.41243 1.15173 1.21825 1.48462 0.95603 0.83193 0.88228 1.26602 0.95799 0.97202 1.02506 1.70188 1.44694 1.11996 1.29214 0.84580 0.79614 0.77451 0.74507 1.18758 1.19502 1.17678 1.21269 1.09771 0.94395 1.00647 1.20999 0.96736 0.99843 0.91379 0.92901 0.91811 0.92260 0.83974 0.84458 0.92648 0.92165 0.91299 0.90196 0.83682 0.87079 0.91852 0.86525 0.84368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.49 9.48 71.98 0.68 -1.81 16 2 C 0.09 1.41 3.37 44.91 0.15 1.56 16 3 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 4 N -0.85 -12.11 8.71 -168.69 -1.47 -13.58 16 5 C -0.10 -2.11 4.81 30.60 0.15 -1.96 16 6 C -0.05 -1.14 5.23 29.85 0.16 -0.98 16 7 C -0.15 -4.97 5.14 -19.84 -0.10 -5.07 16 8 C -0.07 -2.33 9.69 22.25 0.22 -2.11 16 9 C -0.20 -9.05 9.99 22.39 0.22 -8.82 16 10 C 0.11 5.48 6.65 22.58 0.15 5.63 16 11 O -0.24 -14.64 9.76 -22.73 -0.22 -14.86 16 12 C -0.41 -24.82 9.49 67.92 0.64 -24.17 16 13 H 0.10 5.48 5.20 -2.91 -0.02 5.47 16 14 C -0.02 -1.39 5.49 84.83 0.47 -0.93 16 15 N -0.92 -57.72 13.67 21.61 0.30 -57.43 16 16 Si 1.02 43.61 29.55 68.60 2.03 45.64 16 17 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 18 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 19 H -0.25 -10.05 7.11 99.48 0.71 -9.35 16 20 C -0.24 -10.92 9.17 22.39 0.21 -10.71 16 21 C -0.07 -2.56 9.69 22.25 0.22 -2.34 16 22 H 0.05 0.73 8.14 -2.38 -0.02 0.72 16 23 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 25 H 0.35 3.76 9.04 -89.69 -0.81 2.95 16 26 H 0.34 4.56 8.98 -89.69 -0.81 3.76 16 27 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.07 1.52 8.08 -2.39 -0.02 1.50 16 30 H 0.08 1.85 7.69 -2.38 -0.02 1.83 16 31 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 32 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 33 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 34 H 0.12 5.35 5.64 -2.91 -0.02 5.34 16 35 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -70.49 297.18 3.27 -67.22 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: -0.52 Total: 24.72 kcal Atomic # 6 Polarization: -54.88 SS G_CDS: 3.16 Total: -51.72 kcal Atomic # 7 Polarization: -69.83 SS G_CDS: -1.17 Total: -71.00 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.22 Total: -14.86 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -70.49 3.27 -67.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037698070.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.028 kcal (2) G-P(sol) polarization free energy of solvation -70.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds