Wall clock time and date at job start Mon Mar 30 2020 03:36:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50692 * 1
3 3 C 1.35318 * 126.12841 * 2 1
4 4 C 1.50699 * 126.04085 * 0.02562 * 3 2 1
5 5 N 1.46908 * 109.46968 * 80.00080 * 4 3 2
6 6 C 1.46899 * 110.99997 * 180.02562 * 5 4 3
7 7 C 1.53000 * 117.49791 * 223.74820 * 6 5 4
8 8 C 1.52993 * 117.49894 * 155.08728 * 6 5 4
9 9 C 1.39875 * 107.92186 * 180.02562 * 3 2 1
10 10 N 1.30839 * 108.20184 * 359.97438 * 9 3 2
11 11 N 1.34949 * 126.12911 * 180.02562 * 2 1 3
12 12 C 1.46506 * 126.03292 * 359.96407 * 11 2 1
13 13 C 1.50701 * 109.46816 * 89.99911 * 12 11 2
14 14 H 1.08000 * 120.00076 * 359.97438 * 13 12 11
15 15 C 1.37875 * 119.99732 * 179.97438 * 13 12 11
16 16 N 1.31518 * 120.00190 * 0.02562 * 15 13 12
17 17 Si 1.86797 * 119.99975 * 180.02562 * 15 13 12
18 18 H 1.48503 * 109.47371 * 359.97438 * 17 15 13
19 19 H 1.48497 * 109.47406 * 120.00203 * 17 15 13
20 20 H 1.48510 * 109.47117 * 240.00167 * 17 15 13
21 21 H 1.08996 * 109.47479 * 89.99542 * 1 2 3
22 22 H 1.08997 * 109.47307 * 210.00240 * 1 2 3
23 23 H 1.09005 * 109.46944 * 330.00206 * 1 2 3
24 24 H 1.09002 * 109.47534 * 199.99676 * 4 3 2
25 25 H 1.08998 * 109.47475 * 320.00583 * 4 3 2
26 26 H 1.00903 * 110.99922 * 56.04721 * 5 4 3
27 27 H 1.09005 * 115.55188 * 9.41646 * 6 5 4
28 28 H 1.08994 * 117.49832 * 359.97438 * 7 6 5
29 29 H 1.09004 * 117.49447 * 145.02428 * 7 6 5
30 30 H 1.09007 * 117.49783 * 214.98352 * 8 6 5
31 31 H 1.08999 * 117.50126 * 359.97438 * 8 6 5
32 32 H 1.08003 * 125.89835 * 179.73925 * 9 3 2
33 33 H 1.08996 * 109.47043 * 209.99879 * 12 11 2
34 34 H 1.09000 * 109.46815 * 330.00208 * 12 11 2
35 35 H 0.96997 * 119.99711 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.3048 1.0930 0.0000
4 6 1.8433 2.5276 0.0005
5 7 1.4649 2.9197 1.3648
6 6 1.0082 4.3153 1.4039
7 6 1.5149 5.1926 2.5504
8 6 0.0600 4.7169 2.5354
9 6 3.6335 0.6559 -0.0006
10 7 3.6334 -0.6525 -0.0004
11 7 2.3026 -1.0900 -0.0005
12 6 1.8538 -2.4846 -0.0004
13 6 1.6992 -2.9626 -1.4212
14 1 1.9134 -2.2943 -2.2421
15 6 1.2843 -4.2531 -1.6730
16 7 1.0231 -5.0668 -0.6733
17 14 1.0934 -4.8459 -3.4341
18 1 1.4460 -3.7461 -4.3676
19 1 1.9951 -6.0024 -3.6677
20 1 -0.3136 -5.2603 -3.6671
21 1 -0.3634 0.0001 -1.0276
22 1 -0.3634 -0.8899 0.5138
23 1 -0.3633 0.8901 0.5138
24 1 2.6512 3.1693 -0.3510
25 1 0.9823 2.6326 -0.6596
26 1 2.2274 2.7702 2.0086
27 1 0.8631 4.7899 0.4333
28 1 2.1867 4.7341 3.2760
29 1 1.7026 6.2444 2.3343
30 1 -0.7088 5.4559 2.3094
31 1 -0.2253 3.9455 3.2506
32 1 4.5084 1.2891 -0.0047
33 1 2.5900 -3.1031 0.5130
34 1 0.8955 -2.5578 0.5139
35 1 0.7308 -5.9746 -0.8506
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000042355743.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:36:57
Heat of formation + Delta-G solvation = 90.478020 kcal
Electronic energy + Delta-G solvation = -16081.016106 eV
Core-core repulsion = 13502.059889 eV
Total energy + Delta-G solvation = -2578.956218 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 235.138 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-40.46129 -37.79225 -34.13960 -33.35334 -31.88947 -30.57238 -27.38801 -26.43932
-24.02882 -22.90838 -22.42949 -21.18353 -19.80365 -18.57682 -16.69588 -16.03301
-15.75228 -15.32147 -14.47735 -14.27429 -13.89579 -13.37409 -13.01150 -12.72991
-12.56639 -12.39092 -11.97583 -11.63597 -11.59909 -11.39475 -11.33546 -11.02518
-10.84017 -10.74104 -10.43096 -10.24929 -9.78628 -9.68812 -8.64496 -8.29995
-8.13557 -7.54493 -6.25893 -4.33018 2.79987 3.20209 3.28004 3.32919
3.36674 3.65130 3.80077 4.30132 4.33764 4.85312 4.91623 5.07951
5.11023 5.35959 5.47033 5.54881 5.59045 5.66594 5.84415 5.88367
5.90606 6.07895 6.10719 6.16731 6.40275 6.47018 6.85603 7.04874
7.06232 7.19789 7.48641 7.49723 7.67103 7.89271 8.06505 8.65661
8.75582 9.33366 10.82051
Molecular weight = 235.14amu
Principal moments of inertia in cm(-1)
A = 0.045325 B = 0.004937 C = 0.004794
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 617.618996 B = 5670.603879 C = 5838.825639
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.086 4.086
2 C 0.115 3.885
3 C -0.279 4.279
4 C 0.153 3.847
5 N -0.655 5.655
6 C 0.027 3.973
7 C -0.212 4.212
8 C -0.175 4.175
9 C 0.027 3.973
10 N -0.301 5.301
11 N -0.326 5.326
12 C 0.255 3.745
13 C -0.535 4.535
14 H 0.064 0.936
15 C 0.065 3.935
16 N -0.891 5.891
17 Si 0.906 3.094
18 H -0.271 1.271
19 H -0.280 1.280
20 H -0.280 1.280
21 H 0.073 0.927
22 H 0.069 0.931
23 H 0.081 0.919
24 H 0.031 0.969
25 H 0.071 0.929
26 H 0.343 0.657
27 H 0.106 0.894
28 H 0.093 0.907
29 H 0.090 0.910
30 H 0.091 0.909
31 H 0.097 0.903
32 H 0.165 0.835
33 H 0.051 0.949
34 H 0.052 0.948
35 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.516 16.242 3.567 16.698
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.018 4.018
3 C -0.292 4.292
4 C 0.024 3.976
5 N -0.285 5.285
6 C -0.084 4.084
7 C -0.250 4.250
8 C -0.213 4.213
9 C -0.158 4.158
10 N -0.122 5.122
11 N -0.106 5.106
12 C 0.137 3.863
13 C -0.573 4.573
14 H 0.082 0.918
15 C -0.138 4.138
16 N -0.529 5.529
17 Si 0.733 3.267
18 H -0.196 1.196
19 H -0.206 1.206
20 H -0.206 1.206
21 H 0.091 0.909
22 H 0.088 0.912
23 H 0.100 0.900
24 H 0.049 0.951
25 H 0.089 0.911
26 H 0.162 0.838
27 H 0.124 0.876
28 H 0.111 0.889
29 H 0.108 0.892
30 H 0.109 0.891
31 H 0.115 0.885
32 H 0.183 0.817
33 H 0.069 0.931
34 H 0.070 0.930
35 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -1.502 14.521 3.547 15.023
hybrid contribution 0.314 0.704 -0.957 1.229
sum -1.188 15.225 2.590 15.489
Atomic orbital electron populations
1.20370 0.88098 1.03229 1.02783 1.20783 0.94504 0.87200 0.99265
1.19374 0.92400 0.94182 1.23224 1.19987 0.98104 0.90910 0.88630
1.60324 1.41991 1.17204 1.08987 1.22437 1.03176 0.89046 0.93785
1.23417 0.98192 1.00211 1.03229 1.23106 0.92489 1.03000 1.02725
1.23457 0.96755 0.92703 1.02910 1.77312 0.99084 1.11904 1.23950
1.49362 1.02424 1.07862 1.50984 1.19676 0.96061 0.71598 0.98944
1.21340 1.46773 0.97887 0.91339 0.91763 1.24933 0.94671 0.96086
0.98135 1.69932 1.45036 1.07010 1.30970 0.86301 0.77865 0.78817
0.83699 1.19590 1.20631 1.20633 0.90851 0.91185 0.89995 0.95052
0.91084 0.83759 0.87587 0.88875 0.89154 0.89080 0.88496 0.81741
0.93061 0.93010 0.92309
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -1.49 9.89 36.00 0.36 -1.13 16
2 C 0.12 2.32 6.93 -82.27 -0.57 1.75 16
3 C -0.28 -4.95 5.61 -105.05 -0.59 -5.54 16
4 C 0.15 2.10 5.54 -4.97 -0.03 2.07 16
5 N -0.65 -8.28 6.77 -107.99 -0.73 -9.01 16
6 C 0.03 0.28 6.31 -67.72 -0.43 -0.15 16
7 C -0.21 -1.92 10.23 -26.69 -0.27 -2.19 16
8 C -0.17 -1.68 10.46 -26.70 -0.28 -1.96 16
9 C 0.03 0.50 11.96 -17.36 -0.21 0.29 16
10 N -0.30 -6.91 12.58 30.63 0.39 -6.53 16
11 N -0.33 -7.69 3.60 -58.31 -0.21 -7.90 16
12 C 0.26 6.63 6.00 -5.19 -0.03 6.60 16
13 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16
14 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16
15 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16
16 N -0.89 -25.28 13.29 55.43 0.74 -24.54 16
17 Si 0.91 21.20 29.54 -169.99 -5.02 16.18 16
18 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16
19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16
20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16
21 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16
22 H 0.07 1.25 7.08 -51.93 -0.37 0.88 16
23 H 0.08 1.23 7.89 -51.93 -0.41 0.82 16
24 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16
25 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16
26 H 0.34 4.32 8.51 -39.29 -0.33 3.99 16
27 H 0.11 1.03 7.90 -51.93 -0.41 0.62 16
28 H 0.09 0.85 8.09 -51.93 -0.42 0.43 16
29 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16
30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16
31 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16
32 H 0.17 2.46 8.06 -52.48 -0.42 2.04 16
33 H 0.05 1.43 8.14 -51.93 -0.42 1.00 16
34 H 0.05 1.34 7.05 -51.93 -0.37 0.97 16
35 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16
LS Contribution 302.54 15.07 4.56 4.56
Total: -1.00 -29.60 302.54 -7.98 -37.59
By element:
Atomic # 1 Polarization: 8.65 SS G_CDS: -5.23 Total: 3.42 kcal
Atomic # 6 Polarization: -11.30 SS G_CDS: -2.47 Total: -13.77 kcal
Atomic # 7 Polarization: -48.16 SS G_CDS: 0.18 Total: -47.98 kcal
Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal
Total LS contribution 4.56 Total: 4.56 kcal
Total: -29.60 -7.98 -37.59 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000042355743.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 128.067 kcal
(2) G-P(sol) polarization free energy of solvation -29.604 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.463 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.589 kcal
(6) G-S(sol) free energy of system = (1) + (5) 90.478 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds