Wall clock time and date at job start Mon Mar 30 2020 03:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35318 * 126.12841 * 2 1 4 4 C 1.50699 * 126.04085 * 0.02562 * 3 2 1 5 5 N 1.46908 * 109.46968 * 80.00080 * 4 3 2 6 6 C 1.46899 * 110.99997 * 180.02562 * 5 4 3 7 7 C 1.53000 * 117.49791 * 223.74820 * 6 5 4 8 8 C 1.52993 * 117.49894 * 155.08728 * 6 5 4 9 9 C 1.39875 * 107.92186 * 180.02562 * 3 2 1 10 10 N 1.30839 * 108.20184 * 359.97438 * 9 3 2 11 11 N 1.34949 * 126.12911 * 180.02562 * 2 1 3 12 12 C 1.46506 * 126.03292 * 359.96407 * 11 2 1 13 13 C 1.50701 * 109.46816 * 89.99911 * 12 11 2 14 14 H 1.08000 * 120.00076 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99732 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00190 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99975 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47371 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47406 * 120.00203 * 17 15 13 20 20 H 1.48510 * 109.47117 * 240.00167 * 17 15 13 21 21 H 1.08996 * 109.47479 * 89.99542 * 1 2 3 22 22 H 1.08997 * 109.47307 * 210.00240 * 1 2 3 23 23 H 1.09005 * 109.46944 * 330.00206 * 1 2 3 24 24 H 1.09002 * 109.47534 * 199.99676 * 4 3 2 25 25 H 1.08998 * 109.47475 * 320.00583 * 4 3 2 26 26 H 1.00903 * 110.99922 * 56.04721 * 5 4 3 27 27 H 1.09005 * 115.55188 * 9.41646 * 6 5 4 28 28 H 1.08994 * 117.49832 * 359.97438 * 7 6 5 29 29 H 1.09004 * 117.49447 * 145.02428 * 7 6 5 30 30 H 1.09007 * 117.49783 * 214.98352 * 8 6 5 31 31 H 1.08999 * 117.50126 * 359.97438 * 8 6 5 32 32 H 1.08003 * 125.89835 * 179.73925 * 9 3 2 33 33 H 1.08996 * 109.47043 * 209.99879 * 12 11 2 34 34 H 1.09000 * 109.46815 * 330.00208 * 12 11 2 35 35 H 0.96997 * 119.99711 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 1.8433 2.5276 0.0005 5 7 1.4649 2.9197 1.3648 6 6 1.0082 4.3153 1.4039 7 6 1.5149 5.1926 2.5504 8 6 0.0600 4.7169 2.5354 9 6 3.6335 0.6559 -0.0006 10 7 3.6334 -0.6525 -0.0004 11 7 2.3026 -1.0900 -0.0005 12 6 1.8538 -2.4846 -0.0004 13 6 1.6992 -2.9626 -1.4212 14 1 1.9134 -2.2943 -2.2421 15 6 1.2843 -4.2531 -1.6730 16 7 1.0231 -5.0668 -0.6733 17 14 1.0934 -4.8459 -3.4341 18 1 1.4460 -3.7461 -4.3676 19 1 1.9951 -6.0024 -3.6677 20 1 -0.3136 -5.2603 -3.6671 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3633 0.8901 0.5138 24 1 2.6512 3.1693 -0.3510 25 1 0.9823 2.6326 -0.6596 26 1 2.2274 2.7702 2.0086 27 1 0.8631 4.7899 0.4333 28 1 2.1867 4.7341 3.2760 29 1 1.7026 6.2444 2.3343 30 1 -0.7088 5.4559 2.3094 31 1 -0.2253 3.9455 3.2506 32 1 4.5084 1.2891 -0.0047 33 1 2.5900 -3.1031 0.5130 34 1 0.8955 -2.5578 0.5139 35 1 0.7308 -5.9746 -0.8506 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042355743.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:57 Heat of formation + Delta-G solvation = 90.478020 kcal Electronic energy + Delta-G solvation = -16081.016106 eV Core-core repulsion = 13502.059889 eV Total energy + Delta-G solvation = -2578.956218 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.46129 -37.79225 -34.13960 -33.35334 -31.88947 -30.57238 -27.38801 -26.43932 -24.02882 -22.90838 -22.42949 -21.18353 -19.80365 -18.57682 -16.69588 -16.03301 -15.75228 -15.32147 -14.47735 -14.27429 -13.89579 -13.37409 -13.01150 -12.72991 -12.56639 -12.39092 -11.97583 -11.63597 -11.59909 -11.39475 -11.33546 -11.02518 -10.84017 -10.74104 -10.43096 -10.24929 -9.78628 -9.68812 -8.64496 -8.29995 -8.13557 -7.54493 -6.25893 -4.33018 2.79987 3.20209 3.28004 3.32919 3.36674 3.65130 3.80077 4.30132 4.33764 4.85312 4.91623 5.07951 5.11023 5.35959 5.47033 5.54881 5.59045 5.66594 5.84415 5.88367 5.90606 6.07895 6.10719 6.16731 6.40275 6.47018 6.85603 7.04874 7.06232 7.19789 7.48641 7.49723 7.67103 7.89271 8.06505 8.65661 8.75582 9.33366 10.82051 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.045325 B = 0.004937 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.618996 B = 5670.603879 C = 5838.825639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.115 3.885 3 C -0.279 4.279 4 C 0.153 3.847 5 N -0.655 5.655 6 C 0.027 3.973 7 C -0.212 4.212 8 C -0.175 4.175 9 C 0.027 3.973 10 N -0.301 5.301 11 N -0.326 5.326 12 C 0.255 3.745 13 C -0.535 4.535 14 H 0.064 0.936 15 C 0.065 3.935 16 N -0.891 5.891 17 Si 0.906 3.094 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.280 1.280 21 H 0.073 0.927 22 H 0.069 0.931 23 H 0.081 0.919 24 H 0.031 0.969 25 H 0.071 0.929 26 H 0.343 0.657 27 H 0.106 0.894 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.165 0.835 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.516 16.242 3.567 16.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.018 4.018 3 C -0.292 4.292 4 C 0.024 3.976 5 N -0.285 5.285 6 C -0.084 4.084 7 C -0.250 4.250 8 C -0.213 4.213 9 C -0.158 4.158 10 N -0.122 5.122 11 N -0.106 5.106 12 C 0.137 3.863 13 C -0.573 4.573 14 H 0.082 0.918 15 C -0.138 4.138 16 N -0.529 5.529 17 Si 0.733 3.267 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.206 1.206 21 H 0.091 0.909 22 H 0.088 0.912 23 H 0.100 0.900 24 H 0.049 0.951 25 H 0.089 0.911 26 H 0.162 0.838 27 H 0.124 0.876 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.115 0.885 32 H 0.183 0.817 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.502 14.521 3.547 15.023 hybrid contribution 0.314 0.704 -0.957 1.229 sum -1.188 15.225 2.590 15.489 Atomic orbital electron populations 1.20370 0.88098 1.03229 1.02783 1.20783 0.94504 0.87200 0.99265 1.19374 0.92400 0.94182 1.23224 1.19987 0.98104 0.90910 0.88630 1.60324 1.41991 1.17204 1.08987 1.22437 1.03176 0.89046 0.93785 1.23417 0.98192 1.00211 1.03229 1.23106 0.92489 1.03000 1.02725 1.23457 0.96755 0.92703 1.02910 1.77312 0.99084 1.11904 1.23950 1.49362 1.02424 1.07862 1.50984 1.19676 0.96061 0.71598 0.98944 1.21340 1.46773 0.97887 0.91339 0.91763 1.24933 0.94671 0.96086 0.98135 1.69932 1.45036 1.07010 1.30970 0.86301 0.77865 0.78817 0.83699 1.19590 1.20631 1.20633 0.90851 0.91185 0.89995 0.95052 0.91084 0.83759 0.87587 0.88875 0.89154 0.89080 0.88496 0.81741 0.93061 0.93010 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.49 9.89 36.00 0.36 -1.13 16 2 C 0.12 2.32 6.93 -82.27 -0.57 1.75 16 3 C -0.28 -4.95 5.61 -105.05 -0.59 -5.54 16 4 C 0.15 2.10 5.54 -4.97 -0.03 2.07 16 5 N -0.65 -8.28 6.77 -107.99 -0.73 -9.01 16 6 C 0.03 0.28 6.31 -67.72 -0.43 -0.15 16 7 C -0.21 -1.92 10.23 -26.69 -0.27 -2.19 16 8 C -0.17 -1.68 10.46 -26.70 -0.28 -1.96 16 9 C 0.03 0.50 11.96 -17.36 -0.21 0.29 16 10 N -0.30 -6.91 12.58 30.63 0.39 -6.53 16 11 N -0.33 -7.69 3.60 -58.31 -0.21 -7.90 16 12 C 0.26 6.63 6.00 -5.19 -0.03 6.60 16 13 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 14 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 15 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 16 N -0.89 -25.28 13.29 55.43 0.74 -24.54 16 17 Si 0.91 21.20 29.54 -169.99 -5.02 16.18 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 22 H 0.07 1.25 7.08 -51.93 -0.37 0.88 16 23 H 0.08 1.23 7.89 -51.93 -0.41 0.82 16 24 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 26 H 0.34 4.32 8.51 -39.29 -0.33 3.99 16 27 H 0.11 1.03 7.90 -51.93 -0.41 0.62 16 28 H 0.09 0.85 8.09 -51.93 -0.42 0.43 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.17 2.46 8.06 -52.48 -0.42 2.04 16 33 H 0.05 1.43 8.14 -51.93 -0.42 1.00 16 34 H 0.05 1.34 7.05 -51.93 -0.37 0.97 16 35 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 302.54 15.07 4.56 4.56 Total: -1.00 -29.60 302.54 -7.98 -37.59 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -5.23 Total: 3.42 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -2.47 Total: -13.77 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 0.18 Total: -47.98 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.60 -7.98 -37.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042355743.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.067 kcal (2) G-P(sol) polarization free energy of solvation -29.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds